Wall clock time and date at job start Tue Mar 31 2020 08:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 120.00448 * 2 1 4 4 N 1.46499 * 109.47301 * 124.99813 * 3 2 1 5 5 C 1.46501 * 119.99736 * 92.52290 * 4 3 2 6 6 C 1.50703 * 109.46737 * 96.14501 * 5 4 3 7 7 H 1.07993 * 120.00453 * 359.72035 * 6 5 4 8 8 C 1.37882 * 119.99577 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00161 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99991 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47208 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47029 * 119.99950 * 10 8 6 13 13 H 1.48500 * 109.47442 * 240.00312 * 10 8 6 14 14 C 1.34769 * 119.99800 * 272.52556 * 4 3 2 15 15 O 1.21280 * 120.00267 * 3.86994 * 14 4 3 16 16 C 1.50712 * 119.99732 * 183.87292 * 14 4 3 17 17 H 1.08997 * 107.90996 * 41.54085 * 16 14 4 18 18 C 1.51012 * 108.05262 * 158.15174 * 16 14 4 19 19 C 1.53687 * 110.86795 * 193.87328 * 18 16 14 20 20 C 1.51804 * 106.94164 * 280.97386 * 19 18 16 21 21 N 1.30309 * 127.91826 * 245.55070 * 20 19 18 22 22 N 1.29276 * 107.46362 * 180.02562 * 21 20 19 23 23 N 1.29151 * 109.43044 * 359.97438 * 22 21 20 24 24 N 1.28402 * 108.35801 * 0.02562 * 23 22 21 25 25 C 1.47645 * 127.74389 * 179.97438 * 24 23 22 26 26 C 1.50871 * 108.05033 * 284.96116 * 16 14 4 27 27 H 1.07997 * 120.00087 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.99777 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.99738 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.46661 * 4.99688 * 3 2 1 31 31 H 1.09004 * 109.47342 * 244.99925 * 3 2 1 32 32 H 1.08994 * 109.47250 * 336.14333 * 5 4 3 33 33 H 1.09003 * 109.47026 * 216.14085 * 5 4 3 34 34 H 0.96999 * 120.00504 * 179.97438 * 9 8 6 35 35 H 1.09006 * 109.19536 * 314.22659 * 18 16 14 36 36 H 1.08992 * 109.20169 * 73.50946 * 18 16 14 37 37 H 1.08995 * 109.96042 * 40.33627 * 19 18 16 38 38 H 1.09001 * 109.95660 * 161.53582 * 19 18 16 39 39 H 1.09006 * 109.91955 * 233.66812 * 25 24 23 40 40 H 1.08998 * 109.92085 * 354.84183 * 25 24 23 41 41 H 1.09000 * 109.13232 * 286.17042 * 26 16 14 42 42 H 1.08999 * 109.13045 * 45.27646 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 4.3752 0.8769 0.9549 6 6 5.2651 2.0641 0.6908 7 1 4.8432 3.0575 0.6533 8 6 6.6172 1.8814 0.4919 9 7 7.1302 0.6711 0.5320 10 14 7.7202 3.3528 0.1638 11 1 6.9046 4.5938 0.1688 12 1 8.7582 3.4390 1.2223 13 1 8.3748 3.1955 -1.1598 14 6 2.5788 1.7748 2.3346 15 8 1.4180 2.0851 2.4992 16 6 3.5573 1.8848 3.4757 17 1 4.4878 2.2928 3.0811 18 6 3.0011 2.8702 4.4758 19 6 4.0803 3.2946 5.4844 20 6 4.1995 2.1745 6.5021 21 7 3.9097 2.2122 7.7720 22 7 4.1604 1.0425 8.2620 23 7 4.6014 0.2699 7.3257 24 7 4.6362 0.9403 6.2311 25 6 5.0708 0.4743 4.8993 26 6 3.8372 0.4933 3.9872 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3587 2.1316 0.0895 31 1 2.6215 1.4025 -0.9314 32 1 4.4263 0.1895 0.1105 33 1 4.7083 0.3671 1.8590 34 1 8.0813 0.5424 0.3917 35 1 2.6384 3.7516 3.9468 36 1 2.1719 2.4080 5.0112 37 1 5.0325 3.4357 4.9731 38 1 3.7835 4.2190 5.9797 39 1 5.8353 1.1427 4.5031 40 1 5.4638 -0.5399 4.9707 41 1 2.9730 0.1385 4.5486 42 1 4.0089 -0.1708 3.1401 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575808835.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:32 Heat of formation + Delta-G solvation = 98.804518 kcal Electronic energy + Delta-G solvation = -26118.779692 eV Core-core repulsion = 22523.123006 eV Total energy + Delta-G solvation = -3595.656686 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.16860 -39.95584 -37.13458 -35.66753 -34.69925 -33.77692 -32.59153 -32.04577 -31.18465 -27.78494 -27.42708 -25.48382 -24.89151 -23.48562 -23.21970 -21.25095 -20.96861 -19.68772 -18.51699 -17.72134 -17.04575 -16.60911 -16.35509 -15.84736 -15.34212 -14.75479 -14.65009 -14.48232 -14.01187 -13.76043 -13.71313 -13.30075 -12.93306 -12.65245 -12.52841 -12.29804 -12.13413 -11.80438 -11.69016 -11.59568 -11.43822 -11.18687 -11.10579 -10.98573 -10.90033 -10.78872 -10.64872 -10.60577 -10.26820 -9.92888 -9.82632 -9.40064 -8.98635 -8.73894 -7.93666 -6.40361 -4.48613 1.45277 2.14009 2.37505 2.46359 3.05905 3.15337 3.17595 3.22258 3.77095 3.98952 4.14142 4.36161 4.55830 4.62051 4.89253 4.92276 5.02446 5.18933 5.20780 5.24511 5.30624 5.40414 5.51624 5.53983 5.66223 5.76065 5.87242 5.88749 5.92223 5.94933 6.05214 6.17036 6.22298 6.32250 6.41221 6.52720 6.82389 6.95049 7.00772 7.31912 7.55203 7.82642 8.12228 8.57802 8.75941 8.81346 9.20570 10.65511 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.010352 B = 0.006168 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.109055 B = 4538.330540 C = 6257.039601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 C 0.144 3.856 4 N -0.592 5.592 5 C 0.227 3.773 6 C -0.541 4.541 7 H 0.063 0.937 8 C 0.068 3.932 9 N -0.888 5.888 10 Si 0.892 3.108 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.282 1.282 14 C 0.521 3.479 15 O -0.567 6.567 16 C -0.117 4.117 17 H 0.123 0.877 18 C -0.097 4.097 19 C -0.039 4.039 20 C 0.188 3.812 21 N -0.308 5.308 22 N -0.093 5.093 23 N -0.098 5.098 24 N -0.298 5.298 25 C 0.118 3.882 26 C -0.127 4.127 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.044 0.956 34 H 0.267 0.733 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.072 0.928 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.769 0.546 1.822 4.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.180 4.180 3 C 0.021 3.979 4 N -0.322 5.322 5 C 0.108 3.892 6 C -0.580 4.580 7 H 0.081 0.919 8 C -0.136 4.136 9 N -0.525 5.525 10 Si 0.719 3.281 11 H -0.195 1.195 12 H -0.207 1.207 13 H -0.208 1.208 14 C 0.309 3.691 15 O -0.447 6.447 16 C -0.138 4.138 17 H 0.140 0.860 18 C -0.136 4.136 19 C -0.079 4.079 20 C -0.091 4.091 21 N -0.158 5.158 22 N -0.086 5.086 23 N -0.084 5.084 24 N -0.101 5.101 25 C -0.002 4.002 26 C -0.166 4.166 27 H 0.110 0.890 28 H 0.114 0.886 29 H 0.124 0.876 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.128 0.872 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.090 0.910 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.267 0.004 3.163 5.311 hybrid contribution 1.031 0.746 -1.336 1.845 sum -3.236 0.750 1.826 3.791 Atomic orbital electron populations 1.23745 0.95902 1.01370 1.01258 1.23375 0.96135 0.99273 0.99259 1.20421 0.92370 0.94806 0.90263 1.48231 1.13444 1.62183 1.08312 1.19680 0.75225 0.95732 0.98579 1.21524 0.92310 0.93799 1.50365 0.91853 1.24927 0.97990 0.95962 0.94691 1.69908 1.13469 1.20540 1.48625 0.86530 0.80540 0.82733 0.78297 1.19527 1.20739 1.20757 1.20331 0.88138 0.76691 0.83950 1.90615 1.19052 1.51545 1.83523 1.20733 1.01980 0.96077 0.95053 0.85954 1.21156 0.96948 0.99905 0.95608 1.20799 1.01876 0.93050 0.92215 1.26045 0.98885 0.89473 0.94665 1.74912 1.20335 1.15271 1.05254 1.78796 1.13363 0.95968 1.20522 1.78801 1.18357 1.21697 0.89540 1.48727 1.41663 1.08917 1.10801 1.22886 0.98767 1.04142 0.74385 1.21698 0.96637 0.97856 1.00363 0.89027 0.88644 0.87614 0.90723 0.89553 0.94374 0.93818 0.92367 0.89104 0.91049 0.87998 0.87181 0.86049 0.86210 0.90952 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 14.32 29.01 0.42 -2.09 16 2 C -0.16 -2.40 9.83 -36.03 -0.35 -2.75 16 3 C 0.14 2.37 5.76 -5.20 -0.03 2.34 16 4 N -0.59 -10.60 2.46 -176.43 -0.43 -11.03 16 5 C 0.23 4.46 4.70 -5.19 -0.02 4.43 16 6 C -0.54 -11.85 8.09 -34.44 -0.28 -12.13 16 7 H 0.06 1.43 7.81 -52.49 -0.41 1.02 16 8 C 0.07 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.89 -21.21 13.29 55.43 0.74 -20.47 16 10 Si 0.89 18.16 29.54 -169.99 -5.02 13.14 16 11 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 12 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 13 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 14 C 0.52 9.23 6.53 -10.98 -0.07 9.16 16 15 O -0.57 -11.34 15.67 5.56 0.09 -11.25 16 16 C -0.12 -1.72 1.32 -93.83 -0.12 -1.85 16 17 H 0.12 1.88 5.94 -51.93 -0.31 1.57 16 18 C -0.10 -1.30 4.29 -27.37 -0.12 -1.41 16 19 C -0.04 -0.45 6.00 -26.98 -0.16 -0.61 16 20 C 0.19 2.72 7.10 -156.72 -1.11 1.60 16 21 N -0.31 -5.20 12.37 32.63 0.40 -4.79 16 22 N -0.09 -1.66 13.46 60.32 0.81 -0.84 16 23 N -0.10 -1.62 13.36 60.35 0.81 -0.81 16 24 N -0.30 -4.28 3.36 -57.35 -0.19 -4.47 16 25 C 0.12 1.42 6.72 -3.19 -0.02 1.40 16 26 C -0.13 -1.70 4.47 -27.58 -0.12 -1.82 16 27 H 0.09 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.10 1.29 7.84 -52.49 -0.41 0.88 16 29 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 30 H 0.07 1.25 7.21 -51.93 -0.37 0.88 16 31 H 0.09 1.39 8.05 -51.93 -0.42 0.97 16 32 H 0.04 0.82 8.02 -51.93 -0.42 0.40 16 33 H 0.04 0.83 4.57 -51.93 -0.24 0.59 16 34 H 0.27 6.16 8.31 -40.82 -0.34 5.82 16 35 H 0.09 1.21 7.85 -51.93 -0.41 0.81 16 36 H 0.07 1.05 7.92 -51.93 -0.41 0.64 16 37 H 0.10 1.03 7.89 -51.93 -0.41 0.62 16 38 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.12 1.37 7.87 -51.93 -0.41 0.96 16 40 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 42 H 0.11 1.59 5.46 -51.93 -0.28 1.31 16 LS Contribution 344.66 15.07 5.19 5.19 Total: -1.00 -27.75 344.66 -5.45 -33.20 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.74 Total: 4.41 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.10 Total: -2.26 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 2.13 Total: -42.43 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.02 Total: 13.14 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.75 -5.45 -33.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575808835.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.009 kcal (2) G-P(sol) polarization free energy of solvation -27.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds