Wall clock time and date at job start Tue Mar 31 2020 08:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 120.00448 * 2 1 4 4 N 1.46499 * 109.47301 * 124.99813 * 3 2 1 5 5 C 1.46501 * 119.99736 * 92.52290 * 4 3 2 6 6 C 1.50703 * 109.46737 * 96.14501 * 5 4 3 7 7 H 1.07993 * 120.00453 * 359.72035 * 6 5 4 8 8 C 1.37882 * 119.99577 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00161 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99991 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47208 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47029 * 119.99950 * 10 8 6 13 13 H 1.48500 * 109.47442 * 240.00312 * 10 8 6 14 14 C 1.34769 * 119.99800 * 272.52556 * 4 3 2 15 15 O 1.21280 * 120.00267 * 3.86994 * 14 4 3 16 16 C 1.50712 * 119.99732 * 183.87292 * 14 4 3 17 17 H 1.08997 * 107.90996 * 41.54085 * 16 14 4 18 18 C 1.51012 * 108.05262 * 158.15174 * 16 14 4 19 19 C 1.53687 * 110.86795 * 193.87328 * 18 16 14 20 20 C 1.51804 * 106.94164 * 280.97386 * 19 18 16 21 21 N 1.30309 * 127.91826 * 245.55070 * 20 19 18 22 22 N 1.29276 * 107.46362 * 180.02562 * 21 20 19 23 23 N 1.29151 * 109.43044 * 359.97438 * 22 21 20 24 24 N 1.28402 * 108.35801 * 0.02562 * 23 22 21 25 25 C 1.47645 * 127.74389 * 179.97438 * 24 23 22 26 26 C 1.50871 * 108.05033 * 284.96116 * 16 14 4 27 27 H 1.07997 * 120.00087 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.99777 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.99738 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.46661 * 4.99688 * 3 2 1 31 31 H 1.09004 * 109.47342 * 244.99925 * 3 2 1 32 32 H 1.08994 * 109.47250 * 336.14333 * 5 4 3 33 33 H 1.09003 * 109.47026 * 216.14085 * 5 4 3 34 34 H 0.96999 * 120.00504 * 179.97438 * 9 8 6 35 35 H 1.09006 * 109.19536 * 314.22659 * 18 16 14 36 36 H 1.08992 * 109.20169 * 73.50946 * 18 16 14 37 37 H 1.08995 * 109.96042 * 40.33627 * 19 18 16 38 38 H 1.09001 * 109.95660 * 161.53582 * 19 18 16 39 39 H 1.09006 * 109.91955 * 233.66812 * 25 24 23 40 40 H 1.08998 * 109.92085 * 354.84183 * 25 24 23 41 41 H 1.09000 * 109.13232 * 286.17042 * 26 16 14 42 42 H 1.08999 * 109.13045 * 45.27646 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 4.3752 0.8769 0.9549 6 6 5.2651 2.0641 0.6908 7 1 4.8432 3.0575 0.6533 8 6 6.6172 1.8814 0.4919 9 7 7.1302 0.6711 0.5320 10 14 7.7202 3.3528 0.1638 11 1 6.9046 4.5938 0.1688 12 1 8.7582 3.4390 1.2223 13 1 8.3748 3.1955 -1.1598 14 6 2.5788 1.7748 2.3346 15 8 1.4180 2.0851 2.4992 16 6 3.5573 1.8848 3.4757 17 1 4.4878 2.2928 3.0811 18 6 3.0011 2.8702 4.4758 19 6 4.0803 3.2946 5.4844 20 6 4.1995 2.1745 6.5021 21 7 3.9097 2.2122 7.7720 22 7 4.1604 1.0425 8.2620 23 7 4.6014 0.2699 7.3257 24 7 4.6362 0.9403 6.2311 25 6 5.0708 0.4743 4.8993 26 6 3.8372 0.4933 3.9872 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3587 2.1316 0.0895 31 1 2.6215 1.4025 -0.9314 32 1 4.4263 0.1895 0.1105 33 1 4.7083 0.3671 1.8590 34 1 8.0813 0.5424 0.3917 35 1 2.6384 3.7516 3.9468 36 1 2.1719 2.4080 5.0112 37 1 5.0325 3.4357 4.9731 38 1 3.7835 4.2190 5.9797 39 1 5.8353 1.1427 4.5031 40 1 5.4638 -0.5399 4.9707 41 1 2.9730 0.1385 4.5486 42 1 4.0089 -0.1708 3.1401 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575808835.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:32 Heat of formation + Delta-G solvation = 83.610019 kcal Electronic energy + Delta-G solvation = -26119.438575 eV Core-core repulsion = 22523.123006 eV Total energy + Delta-G solvation = -3596.315569 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.36663 -41.31668 -38.33342 -37.09375 -35.89309 -35.16728 -34.07445 -33.30962 -32.31884 -29.27986 -28.71598 -26.75578 -26.04467 -24.93558 -24.58793 -22.44944 -22.08289 -20.87165 -19.87194 -18.88558 -18.58774 -17.97393 -17.66376 -17.26586 -16.49797 -16.27889 -15.98961 -15.64114 -15.25763 -14.99421 -14.87636 -14.48528 -14.25648 -14.04637 -13.85585 -13.49908 -13.48814 -13.11561 -12.96237 -12.84957 -12.77290 -12.67115 -12.41144 -12.31184 -12.20115 -11.99602 -11.97760 -11.82175 -11.70647 -11.52430 -11.05428 -10.72196 -10.51753 -10.19395 -9.43358 -8.14075 -6.26209 0.27400 1.05544 1.14389 1.30238 1.44911 1.53500 1.59385 1.78431 2.39579 2.51717 2.92899 3.16812 3.28627 3.40145 3.52236 3.80030 3.90511 4.04588 4.11440 4.17407 4.20837 4.22831 4.37226 4.43351 4.54272 4.59652 4.68216 4.79978 4.81502 4.85555 4.88399 4.96755 5.03368 5.07968 5.19511 5.30304 5.39323 5.67975 5.72542 5.82069 5.91412 6.13526 6.62511 6.89228 7.34847 7.48036 7.53306 8.90543 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.010352 B = 0.006168 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.109055 B = 4538.330540 C = 6257.039601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.179 4.179 3 C 0.141 3.859 4 N -0.594 5.594 5 C 0.239 3.761 6 C -0.539 4.539 7 H 0.055 0.945 8 C 0.035 3.965 9 N -0.912 5.912 10 Si 0.940 3.060 11 H -0.270 1.270 12 H -0.277 1.277 13 H -0.291 1.291 14 C 0.516 3.484 15 O -0.592 6.592 16 C -0.110 4.110 17 H 0.121 0.879 18 C -0.089 4.089 19 C -0.031 4.031 20 C 0.192 3.808 21 N -0.329 5.329 22 N -0.118 5.118 23 N -0.106 5.106 24 N -0.294 5.294 25 C 0.119 3.881 26 C -0.119 4.119 27 H 0.114 0.886 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.019 0.981 33 H 0.054 0.946 34 H 0.267 0.733 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.124 0.876 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.064 0.936 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.420 1.034 1.743 3.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.198 4.198 3 C 0.019 3.981 4 N -0.323 5.323 5 C 0.119 3.881 6 C -0.578 4.578 7 H 0.073 0.927 8 C -0.166 4.166 9 N -0.551 5.551 10 Si 0.767 3.233 11 H -0.195 1.195 12 H -0.202 1.202 13 H -0.217 1.217 14 C 0.305 3.695 15 O -0.474 6.474 16 C -0.130 4.130 17 H 0.138 0.862 18 C -0.128 4.128 19 C -0.071 4.071 20 C -0.087 4.087 21 N -0.178 5.178 22 N -0.111 5.111 23 N -0.093 5.093 24 N -0.097 5.097 25 C 0.001 3.999 26 C -0.157 4.157 27 H 0.132 0.868 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.142 0.858 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.083 0.917 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.922 0.493 3.078 5.010 hybrid contribution 0.832 0.591 -1.405 1.737 sum -3.090 1.084 1.672 3.677 Atomic orbital electron populations 1.23941 0.95464 1.02433 0.98916 1.23279 0.96619 0.98491 1.01397 1.20481 0.92191 0.95663 0.89794 1.48259 1.13036 1.62080 1.08943 1.19451 0.75783 0.94681 0.98208 1.21648 0.92560 0.93974 1.49569 0.92681 1.25406 0.98981 0.97450 0.94801 1.69972 1.13638 1.21728 1.49753 0.85772 0.79220 0.80627 0.77637 1.19487 1.20229 1.21720 1.20847 0.88326 0.75910 0.84380 1.90599 1.20254 1.52624 1.83895 1.20756 1.00844 0.97098 0.94346 0.86158 1.21063 0.96985 0.99378 0.95419 1.20955 1.02273 0.92730 0.91130 1.26510 0.97693 0.90003 0.94465 1.74855 1.21171 1.15251 1.06541 1.78773 1.14435 0.96543 1.21356 1.78742 1.18489 1.21981 0.90059 1.48883 1.41138 1.08817 1.10883 1.23067 0.98182 1.05688 0.73006 1.21576 0.97056 0.96836 1.00252 0.86828 0.88661 0.87348 0.91296 0.89759 0.96253 0.92796 0.92421 0.88994 0.92640 0.85830 0.85052 0.84604 0.84408 0.91736 0.87184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.35 14.32 67.78 0.97 -3.38 16 2 C -0.18 -5.19 9.83 25.64 0.25 -4.94 16 3 C 0.14 4.62 5.76 85.63 0.49 5.11 16 4 N -0.59 -20.97 2.46 -830.49 -2.04 -23.01 16 5 C 0.24 9.21 4.70 85.63 0.40 9.62 16 6 C -0.54 -23.00 8.09 25.60 0.21 -22.79 16 7 H 0.05 2.43 7.81 -2.91 -0.02 2.40 16 8 C 0.04 1.55 5.46 84.66 0.46 2.01 16 9 N -0.91 -42.63 13.29 21.45 0.28 -42.34 16 10 Si 0.94 36.16 29.54 68.60 2.03 38.19 16 11 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 12 H -0.28 -10.39 7.11 99.48 0.71 -9.68 16 13 H -0.29 -11.57 7.11 99.48 0.71 -10.86 16 14 C 0.52 17.90 6.53 87.66 0.57 18.48 16 15 O -0.59 -23.36 15.67 -3.03 -0.05 -23.41 16 16 C -0.11 -3.05 1.32 -12.88 -0.02 -3.07 16 17 H 0.12 3.46 5.94 -2.39 -0.01 3.44 16 18 C -0.09 -2.24 4.29 30.18 0.13 -2.11 16 19 C -0.03 -0.63 6.00 30.43 0.18 -0.45 16 20 C 0.19 5.21 7.10 139.13 0.99 6.20 16 21 N -0.33 -10.73 12.37 -50.67 -0.63 -11.35 16 22 N -0.12 -4.12 13.46 36.91 0.50 -3.62 16 23 N -0.11 -3.39 13.36 37.02 0.49 -2.90 16 24 N -0.29 -7.95 3.36 -335.36 -1.13 -9.07 16 25 C 0.12 2.62 6.72 86.30 0.58 3.20 16 26 C -0.12 -3.00 4.47 30.04 0.13 -2.87 16 27 H 0.11 2.40 8.06 -2.91 -0.02 2.38 16 28 H 0.10 2.44 7.84 -2.91 -0.02 2.42 16 29 H 0.11 3.07 8.06 -2.91 -0.02 3.05 16 30 H 0.07 2.30 7.21 -2.38 -0.02 2.29 16 31 H 0.08 2.72 8.05 -2.39 -0.02 2.70 16 32 H 0.02 0.82 8.02 -2.39 -0.02 0.81 16 33 H 0.05 1.99 4.57 -2.39 -0.01 1.98 16 34 H 0.27 12.04 8.31 -92.71 -0.77 11.27 16 35 H 0.09 2.31 7.85 -2.38 -0.02 2.29 16 36 H 0.05 1.58 7.92 -2.39 -0.02 1.56 16 37 H 0.12 2.06 7.89 -2.39 -0.02 2.04 16 38 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.14 2.67 7.87 -2.38 -0.02 2.65 16 40 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.06 1.75 8.08 -2.39 -0.02 1.73 16 42 H 0.11 2.92 5.46 -2.39 -0.01 2.91 16 Total: -1.00 -57.84 344.66 5.84 -51.99 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 1.03 Total: 20.52 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 5.36 Total: 5.01 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -2.52 Total: -92.30 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.05 Total: -23.41 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Total: -57.84 5.84 -51.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575808835.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.603 kcal (2) G-P(sol) polarization free energy of solvation -57.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds