Wall clock time and date at job start Tue Mar 31 2020 09:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 S 1.65602 * 119.99727 * 2 1 4 4 O 1.42104 * 106.40195 * 311.46365 * 3 2 1 5 5 O 1.42095 * 106.40049 * 178.54298 * 3 2 1 6 6 N 1.65602 * 107.21556 * 65.00283 * 3 2 1 7 7 C 1.46491 * 120.00077 * 65.00268 * 6 3 2 8 8 C 1.53118 * 109.52500 * 145.00056 * 7 6 3 9 9 C 1.53041 * 109.27935 * 177.55891 * 8 7 6 10 10 N 1.46845 * 109.52027 * 300.81443 * 9 8 7 11 11 C 1.46905 * 110.99839 * 185.83791 * 10 9 8 12 12 H 1.08995 * 109.46912 * 188.74493 * 11 10 9 13 13 C 1.53000 * 109.47319 * 308.75022 * 11 10 9 14 14 C 1.53000 * 109.46632 * 68.75013 * 11 10 9 15 15 C 1.50698 * 109.47560 * 63.54473 * 14 11 10 16 16 H 1.08003 * 119.99770 * 5.06262 * 15 14 11 17 17 C 1.37871 * 120.00232 * 185.06482 * 15 14 11 18 18 N 1.31519 * 120.00019 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 119.99896 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47001 * 89.99985 * 19 17 15 21 21 H 1.48498 * 109.46827 * 209.99721 * 19 17 15 22 22 H 1.48498 * 109.47138 * 329.99789 * 19 17 15 23 23 C 1.46847 * 111.19607 * 61.74839 * 10 9 8 24 24 C 1.53040 * 109.51970 * 298.25324 * 23 10 9 25 25 H 1.09008 * 109.47105 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47082 * 299.99529 * 1 2 3 27 27 H 1.08995 * 109.47276 * 59.99967 * 1 2 3 28 28 H 0.96996 * 120.00198 * 180.02562 * 2 1 3 29 29 H 0.97005 * 119.99472 * 244.99626 * 6 3 2 30 30 H 1.08996 * 109.57882 * 24.83447 * 7 6 3 31 31 H 1.09002 * 109.50784 * 57.61391 * 8 7 6 32 32 H 1.09001 * 109.50270 * 297.49864 * 8 7 6 33 33 H 1.08992 * 109.46177 * 60.83536 * 9 8 7 34 34 H 1.08998 * 109.46019 * 180.80180 * 9 8 7 35 35 H 1.09008 * 109.47081 * 299.99791 * 13 11 10 36 36 H 1.08999 * 109.47303 * 59.99435 * 13 11 10 37 37 H 1.08991 * 109.47305 * 179.97438 * 13 11 10 38 38 H 1.09004 * 109.46536 * 183.54304 * 14 11 10 39 39 H 1.08998 * 109.46921 * 303.53881 * 14 11 10 40 40 H 0.96998 * 119.99982 * 180.02562 * 18 17 15 41 41 H 1.08992 * 109.46649 * 58.26913 * 23 10 9 42 42 H 1.09006 * 109.46076 * 178.24063 * 23 10 9 43 43 H 1.09005 * 109.50321 * 179.12580 * 24 23 10 44 44 H 1.08998 * 109.50267 * 299.23379 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7118 2.2330 -1.0216 5 8 3.6737 1.1004 0.0347 6 7 1.9591 2.1929 1.4337 7 6 2.3998 1.5975 2.6975 8 6 2.7873 2.7074 3.6784 9 6 3.1886 2.0820 5.0163 10 7 2.0644 1.3027 5.5505 11 6 2.3646 0.8016 6.8984 12 1 1.5871 0.1033 7.2079 13 6 3.7173 0.0867 6.8873 14 6 2.4160 1.9750 7.8789 15 6 1.0589 2.6258 7.9551 16 1 0.2219 2.1926 7.4275 17 6 0.8857 3.7740 8.6983 18 7 -0.2985 4.3422 8.7644 19 14 2.3333 4.5228 9.6114 20 1 3.0257 5.4957 8.7285 21 1 1.8441 5.2195 10.8281 22 1 3.2806 3.4485 10.0032 23 6 1.7053 0.2016 4.6477 24 6 1.2598 0.7709 3.2988 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.9500 -0.8400 -0.0004 29 1 1.4717 3.0316 1.4365 30 1 3.2607 0.9536 2.5173 31 1 1.9377 3.3736 3.8284 32 1 3.6271 3.2730 3.2747 33 1 4.0469 1.4268 4.8680 34 1 3.4514 2.8705 5.7215 35 1 3.6807 -0.7493 6.1887 36 1 4.4948 0.7850 6.5777 37 1 3.9402 -0.2847 7.8874 38 1 2.7004 1.6111 8.8662 39 1 3.1497 2.7039 7.5350 40 1 -0.4203 5.1503 9.2869 41 1 2.5704 -0.4449 4.5011 42 1 0.8907 -0.3757 5.0851 43 1 1.0080 -0.0471 2.6238 44 1 0.3860 1.4065 3.4427 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579481154.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:22:24 Heat of formation + Delta-G solvation = -79.221945 kcal Electronic energy + Delta-G solvation = -24613.668592 eV Core-core repulsion = 21113.443299 eV Total energy + Delta-G solvation = -3500.225293 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.31278 -37.37197 -36.24273 -36.00186 -35.18377 -33.12767 -31.86365 -30.66839 -28.96342 -27.72368 -26.25858 -23.89164 -23.09317 -22.36099 -20.22707 -20.03089 -18.94788 -18.17039 -17.52382 -16.82252 -16.58597 -15.90232 -15.30482 -14.81223 -14.63437 -14.27886 -14.11508 -13.92960 -13.69254 -13.50207 -13.13492 -12.83672 -12.55363 -12.35720 -12.28101 -12.20325 -12.11444 -11.94856 -11.86157 -11.63839 -11.42110 -11.14307 -11.08376 -10.82237 -10.65250 -10.31165 -10.11314 -9.91951 -9.73171 -9.56792 -9.47629 -9.04789 -8.43975 -7.56356 -5.93121 -3.86930 0.47223 2.71524 3.33546 3.41984 3.42059 3.43916 4.31466 4.38230 4.52336 4.66551 4.76368 4.91161 5.04945 5.17290 5.21622 5.39182 5.41043 5.45859 5.52465 5.55511 5.61709 5.67113 5.75679 5.79370 5.87657 5.90851 6.03432 6.14001 6.30262 6.31360 6.41145 6.51933 6.55517 6.60941 6.75395 6.90340 7.11798 7.27462 7.74586 7.78954 7.93427 8.69288 9.18450 9.70136 11.20942 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.022770 B = 0.003643 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.415325 B = 7683.396362 C = 7893.281419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.131 6.131 3 S 2.792 3.208 4 O -0.984 6.984 5 O -0.982 6.982 6 N -1.119 6.119 7 C 0.151 3.849 8 C -0.118 4.118 9 C 0.057 3.943 10 N -0.507 5.507 11 C 0.096 3.904 12 H 0.075 0.925 13 C -0.188 4.188 14 C -0.006 4.006 15 C -0.488 4.488 16 H 0.077 0.923 17 C 0.062 3.938 18 N -0.908 5.908 19 Si 0.872 3.128 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.269 1.269 23 C 0.056 3.944 24 C -0.133 4.133 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.416 0.584 29 H 0.418 0.582 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.016 0.984 39 H 0.013 0.987 40 H 0.259 0.741 41 H 0.025 0.975 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.116 -10.154 -15.583 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.892 5.892 3 S 2.798 3.202 4 O -0.967 6.967 5 O -0.966 6.966 6 N -0.880 5.880 7 C 0.044 3.956 8 C -0.158 4.158 9 C -0.072 4.072 10 N -0.231 5.231 11 C -0.012 4.012 12 H 0.093 0.907 13 C -0.246 4.246 14 C -0.043 4.043 15 C -0.526 4.526 16 H 0.096 0.904 17 C -0.137 4.137 18 N -0.548 5.548 19 Si 0.700 3.300 20 H -0.206 1.206 21 H -0.217 1.217 22 H -0.194 1.194 23 C -0.073 4.073 24 C -0.173 4.173 25 H 0.098 0.902 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.248 0.752 29 H 0.252 0.748 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.043 0.957 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.153 -9.363 -16.198 19.165 hybrid contribution 1.084 -0.176 0.844 1.385 sum 5.237 -9.540 -15.354 18.820 Atomic orbital electron populations 1.21458 0.78503 1.04037 1.02100 1.55683 1.16320 1.25091 1.92105 1.01659 0.73090 0.72708 0.72791 1.93622 1.79139 1.68783 1.55155 1.93628 1.31865 1.84046 1.87024 1.55871 1.73491 1.36315 1.22283 1.20923 0.96414 0.95396 0.82852 1.21857 1.02487 0.97381 0.94054 1.22057 0.91771 0.97908 0.95434 1.62012 1.37736 1.21834 1.01521 1.21682 0.93653 0.97135 0.88687 0.90699 1.22569 1.00394 1.00247 1.01439 1.19668 0.98362 0.93129 0.93138 1.21005 0.94303 1.08787 1.28550 0.90449 1.24993 0.95158 0.97024 0.96542 1.69907 1.22156 1.20609 1.42175 0.86917 0.83704 0.79633 0.79745 1.20579 1.21682 1.19390 1.22021 0.99444 0.93107 0.92694 1.22163 0.99360 0.99548 0.96202 0.90174 0.91756 0.91696 0.75156 0.74754 0.89789 0.89821 0.91330 0.95369 0.89463 0.93790 0.92736 0.92503 0.96610 0.96902 0.93085 0.95660 0.90680 0.91748 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 10.85 59.85 0.65 1.19 16 2 N -1.13 -8.56 5.89 -16.63 -0.10 -8.66 16 3 S 2.79 30.12 6.16 -107.50 -0.66 29.46 16 4 O -0.98 -13.48 17.86 -57.17 -1.02 -14.51 16 5 O -0.98 -13.69 17.48 -57.17 -1.00 -14.69 16 6 N -1.12 -11.26 5.53 -4.79 -0.03 -11.28 16 7 C 0.15 1.73 2.88 -67.81 -0.20 1.53 16 8 C -0.12 -1.58 5.63 -26.65 -0.15 -1.73 16 9 C 0.06 0.89 4.47 -3.83 -0.02 0.87 16 10 N -0.51 -8.62 4.26 -226.69 -0.97 -9.59 16 11 C 0.10 1.76 2.26 -67.71 -0.15 1.61 16 12 H 0.07 1.41 7.93 -51.93 -0.41 1.00 16 13 C -0.19 -2.83 8.40 37.16 0.31 -2.52 16 14 C -0.01 -0.12 3.47 -27.88 -0.10 -0.22 16 15 C -0.49 -13.30 9.35 -34.44 -0.32 -13.62 16 16 H 0.08 2.31 7.99 -52.48 -0.42 1.89 16 17 C 0.06 1.78 5.47 -17.82 -0.10 1.68 16 18 N -0.91 -27.70 13.96 55.43 0.77 -26.92 16 19 Si 0.87 21.43 27.37 -169.99 -4.65 16.77 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.27 -6.34 6.69 56.52 0.38 -5.97 16 23 C 0.06 0.76 5.18 -3.83 -0.02 0.74 16 24 C -0.13 -1.51 5.70 -26.65 -0.15 -1.67 16 25 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 26 H 0.06 0.39 7.74 -51.93 -0.40 -0.01 16 27 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 28 H 0.42 2.44 8.96 -34.47 -0.31 2.13 16 29 H 0.42 3.76 8.84 -34.47 -0.30 3.46 16 30 H 0.08 0.96 7.51 -51.93 -0.39 0.57 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.03 0.40 6.57 -51.93 -0.34 0.06 16 34 H 0.09 1.53 6.28 -51.93 -0.33 1.21 16 35 H 0.04 0.59 6.93 -51.92 -0.36 0.23 16 36 H 0.05 0.81 6.44 -51.93 -0.33 0.47 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.02 0.36 7.55 -51.93 -0.39 -0.03 16 39 H 0.01 0.29 5.54 -51.93 -0.29 0.00 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.03 0.32 6.98 -51.93 -0.36 -0.05 16 42 H 0.07 1.02 7.98 -51.93 -0.41 0.60 16 43 H 0.06 0.58 7.05 -51.93 -0.37 0.21 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 350.49 15.07 5.28 5.28 Total: -1.00 -34.61 350.49 -9.73 -44.34 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -7.11 Total: 1.93 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -0.24 Total: -12.13 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.32 Total: -56.46 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -2.02 Total: -29.19 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.65 Total: 16.77 kcal Atomic # 16 Polarization: 30.12 SS G_CDS: -0.66 Total: 29.46 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.61 -9.73 -44.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579481154.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.882 kcal (2) G-P(sol) polarization free energy of solvation -34.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds