Wall clock time and date at job start Tue Mar 31 2020 09:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 S 1.65602 * 119.99727 * 2 1 4 4 O 1.42104 * 106.40195 * 311.46365 * 3 2 1 5 5 O 1.42095 * 106.40049 * 178.54298 * 3 2 1 6 6 N 1.65602 * 107.21556 * 65.00283 * 3 2 1 7 7 C 1.46491 * 120.00077 * 65.00268 * 6 3 2 8 8 C 1.53118 * 109.52500 * 145.00056 * 7 6 3 9 9 C 1.53041 * 109.27935 * 177.55891 * 8 7 6 10 10 N 1.46845 * 109.52027 * 300.81443 * 9 8 7 11 11 C 1.46905 * 110.99839 * 185.83791 * 10 9 8 12 12 H 1.08995 * 109.46912 * 188.74493 * 11 10 9 13 13 C 1.53000 * 109.47319 * 308.75022 * 11 10 9 14 14 C 1.53000 * 109.46632 * 68.75013 * 11 10 9 15 15 C 1.50698 * 109.47560 * 63.54473 * 14 11 10 16 16 H 1.08003 * 119.99770 * 5.06262 * 15 14 11 17 17 C 1.37871 * 120.00232 * 185.06482 * 15 14 11 18 18 N 1.31519 * 120.00019 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 119.99896 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47001 * 89.99985 * 19 17 15 21 21 H 1.48498 * 109.46827 * 209.99721 * 19 17 15 22 22 H 1.48498 * 109.47138 * 329.99789 * 19 17 15 23 23 C 1.46847 * 111.19607 * 61.74839 * 10 9 8 24 24 C 1.53040 * 109.51970 * 298.25324 * 23 10 9 25 25 H 1.09008 * 109.47105 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47082 * 299.99529 * 1 2 3 27 27 H 1.08995 * 109.47276 * 59.99967 * 1 2 3 28 28 H 0.96996 * 120.00198 * 180.02562 * 2 1 3 29 29 H 0.97005 * 119.99472 * 244.99626 * 6 3 2 30 30 H 1.08996 * 109.57882 * 24.83447 * 7 6 3 31 31 H 1.09002 * 109.50784 * 57.61391 * 8 7 6 32 32 H 1.09001 * 109.50270 * 297.49864 * 8 7 6 33 33 H 1.08992 * 109.46177 * 60.83536 * 9 8 7 34 34 H 1.08998 * 109.46019 * 180.80180 * 9 8 7 35 35 H 1.09008 * 109.47081 * 299.99791 * 13 11 10 36 36 H 1.08999 * 109.47303 * 59.99435 * 13 11 10 37 37 H 1.08991 * 109.47305 * 179.97438 * 13 11 10 38 38 H 1.09004 * 109.46536 * 183.54304 * 14 11 10 39 39 H 1.08998 * 109.46921 * 303.53881 * 14 11 10 40 40 H 0.96998 * 119.99982 * 180.02562 * 18 17 15 41 41 H 1.08992 * 109.46649 * 58.26913 * 23 10 9 42 42 H 1.09006 * 109.46076 * 178.24063 * 23 10 9 43 43 H 1.09005 * 109.50321 * 179.12580 * 24 23 10 44 44 H 1.08998 * 109.50267 * 299.23379 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7118 2.2330 -1.0216 5 8 3.6737 1.1004 0.0347 6 7 1.9591 2.1929 1.4337 7 6 2.3998 1.5975 2.6975 8 6 2.7873 2.7074 3.6784 9 6 3.1886 2.0820 5.0163 10 7 2.0644 1.3027 5.5505 11 6 2.3646 0.8016 6.8984 12 1 1.5871 0.1033 7.2079 13 6 3.7173 0.0867 6.8873 14 6 2.4160 1.9750 7.8789 15 6 1.0589 2.6258 7.9551 16 1 0.2219 2.1926 7.4275 17 6 0.8857 3.7740 8.6983 18 7 -0.2985 4.3422 8.7644 19 14 2.3333 4.5228 9.6114 20 1 3.0257 5.4957 8.7285 21 1 1.8441 5.2195 10.8281 22 1 3.2806 3.4485 10.0032 23 6 1.7053 0.2016 4.6477 24 6 1.2598 0.7709 3.2988 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.9500 -0.8400 -0.0004 29 1 1.4717 3.0316 1.4365 30 1 3.2607 0.9536 2.5173 31 1 1.9377 3.3736 3.8284 32 1 3.6271 3.2730 3.2747 33 1 4.0469 1.4268 4.8680 34 1 3.4514 2.8705 5.7215 35 1 3.6807 -0.7493 6.1887 36 1 4.4948 0.7850 6.5777 37 1 3.9402 -0.2847 7.8874 38 1 2.7004 1.6111 8.8662 39 1 3.1497 2.7039 7.5350 40 1 -0.4203 5.1503 9.2869 41 1 2.5704 -0.4449 4.5011 42 1 0.8907 -0.3757 5.0851 43 1 1.0080 -0.0471 2.6238 44 1 0.3860 1.4065 3.4427 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579481154.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:22:23 Heat of formation + Delta-G solvation = -108.427149 kcal Electronic energy + Delta-G solvation = -24614.935024 eV Core-core repulsion = 21113.443299 eV Total energy + Delta-G solvation = -3501.491726 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.47642 -38.35680 -37.38779 -36.98435 -35.82196 -34.87450 -33.42197 -31.76090 -30.41253 -29.19295 -26.81351 -25.23809 -24.37372 -23.80906 -21.40001 -20.92674 -20.19088 -19.01383 -18.72994 -18.41134 -17.73254 -16.94259 -16.38358 -16.31391 -15.67494 -15.56893 -15.22912 -14.85968 -14.73012 -14.68424 -14.47490 -13.97200 -13.84370 -13.74877 -13.52608 -13.29073 -13.25310 -13.19947 -12.97772 -12.67711 -12.60700 -12.50270 -12.30206 -12.13222 -11.89928 -11.75862 -11.59200 -11.40965 -11.28702 -10.95308 -10.63129 -10.54166 -10.40173 -8.80208 -8.13823 -6.11326 -0.38286 1.38541 1.40408 1.50634 1.91776 2.44485 2.59818 3.12330 3.28340 3.45579 3.72651 3.90282 4.03332 4.17304 4.25176 4.32466 4.39950 4.47234 4.48307 4.55487 4.66687 4.69976 4.76596 4.85420 4.91615 4.97160 4.99498 5.04261 5.10520 5.19843 5.20445 5.27736 5.28496 5.36827 5.51876 5.59565 5.79788 5.99773 6.19103 6.42331 6.52920 6.60315 6.96381 7.49075 9.03554 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.022770 B = 0.003643 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.415325 B = 7683.396362 C = 7893.281419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -1.120 6.120 3 S 2.813 3.187 4 O -1.013 7.013 5 O -1.012 7.012 6 N -1.114 6.114 7 C 0.157 3.843 8 C -0.117 4.117 9 C 0.058 3.942 10 N -0.536 5.536 11 C 0.099 3.901 12 H 0.063 0.937 13 C -0.177 4.177 14 C -0.004 4.004 15 C -0.482 4.482 16 H 0.037 0.963 17 C -0.001 4.001 18 N -0.959 5.959 19 Si 0.938 3.062 20 H -0.273 1.273 21 H -0.292 1.292 22 H -0.249 1.249 23 C 0.056 3.944 24 C -0.127 4.127 25 H 0.106 0.894 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.426 0.574 29 H 0.423 0.577 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.045 0.955 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.811 -11.736 -16.335 20.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.884 5.884 3 S 2.818 3.182 4 O -0.997 6.997 5 O -0.996 6.996 6 N -0.875 5.875 7 C 0.050 3.950 8 C -0.156 4.156 9 C -0.071 4.071 10 N -0.261 5.261 11 C -0.009 4.009 12 H 0.081 0.919 13 C -0.235 4.235 14 C -0.042 4.042 15 C -0.520 4.520 16 H 0.055 0.945 17 C -0.195 4.195 18 N -0.602 5.602 19 Si 0.764 3.236 20 H -0.198 1.198 21 H -0.218 1.218 22 H -0.173 1.173 23 C -0.073 4.073 24 C -0.167 4.167 25 H 0.125 0.875 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.262 0.738 29 H 0.258 0.742 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.035 0.965 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.113 0.887 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.867 -10.969 -16.965 21.036 hybrid contribution 0.443 0.258 1.035 1.155 sum 6.309 -10.711 -15.929 20.206 Atomic orbital electron populations 1.21670 0.77361 1.05808 1.02080 1.55364 1.16917 1.24416 1.91737 1.00843 0.72248 0.72786 0.72282 1.93584 1.79535 1.70135 1.56432 1.93583 1.34049 1.84558 1.87369 1.55702 1.73492 1.36717 1.21556 1.20812 0.96758 0.94746 0.82662 1.21815 1.02224 0.97807 0.93786 1.22025 0.92102 0.97401 0.95575 1.61902 1.38769 1.23695 1.01707 1.21466 0.95471 0.95291 0.88708 0.91901 1.22425 0.97997 1.00606 1.02511 1.19623 0.95322 0.94649 0.94577 1.21258 0.95473 1.08430 1.26847 0.94472 1.25865 0.97892 0.97866 0.97920 1.70075 1.24701 1.21474 1.43908 0.85840 0.80417 0.79174 0.78208 1.19850 1.21845 1.17277 1.22089 1.00036 0.92391 0.92772 1.22135 0.98586 1.00205 0.95748 0.87537 0.91459 0.92186 0.73806 0.74193 0.88844 0.91720 0.90145 0.93465 0.92121 0.91529 0.92338 0.91993 0.96581 0.96536 0.93222 0.93697 0.91101 0.88720 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.85 127.77 1.39 2.16 16 2 N -1.12 -14.12 5.89 -206.53 -1.22 -15.34 16 3 S 2.81 56.18 6.16 -56.49 -0.35 55.83 16 4 O -1.01 -26.81 17.86 -128.00 -2.29 -29.10 16 5 O -1.01 -26.49 17.48 -128.00 -2.24 -28.73 16 6 N -1.11 -20.73 5.53 -169.08 -0.94 -21.66 16 7 C 0.16 3.29 2.88 45.07 0.13 3.42 16 8 C -0.12 -3.00 5.63 30.65 0.17 -2.83 16 9 C 0.06 1.72 4.47 86.33 0.39 2.10 16 10 N -0.54 -17.81 4.26 -871.11 -3.71 -21.52 16 11 C 0.10 3.53 2.26 44.91 0.10 3.63 16 12 H 0.06 2.35 7.93 -2.39 -0.02 2.33 16 13 C -0.18 -4.83 8.40 71.98 0.60 -4.22 16 14 C 0.00 -0.18 3.47 29.85 0.10 -0.08 16 15 C -0.48 -26.88 9.35 25.60 0.24 -26.65 16 16 H 0.04 2.32 7.99 -2.91 -0.02 2.29 16 17 C 0.00 -0.04 5.47 84.65 0.46 0.42 16 18 N -0.96 -60.35 13.96 21.45 0.30 -60.05 16 19 Si 0.94 44.39 27.37 68.60 1.88 46.27 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.25 -10.88 6.69 99.48 0.67 -10.21 16 23 C 0.06 1.39 5.18 86.33 0.45 1.84 16 24 C -0.13 -2.64 5.70 30.65 0.17 -2.46 16 25 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.07 0.66 7.74 -2.39 -0.02 0.64 16 27 H 0.06 0.69 8.10 -2.39 -0.02 0.67 16 28 H 0.43 3.71 8.96 -96.75 -0.87 2.85 16 29 H 0.42 7.23 8.84 -96.74 -0.86 6.37 16 30 H 0.09 1.85 7.51 -2.39 -0.02 1.83 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.05 1.22 6.57 -2.39 -0.02 1.21 16 34 H 0.06 2.11 6.28 -2.39 -0.02 2.09 16 35 H 0.07 1.53 6.93 -2.38 -0.02 1.51 16 36 H 0.06 1.56 6.44 -2.39 -0.02 1.54 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.02 0.71 7.55 -2.39 -0.02 0.70 16 39 H 0.02 0.73 5.54 -2.39 -0.01 0.71 16 40 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.04 0.96 6.98 -2.39 -0.02 0.95 16 42 H 0.07 1.82 7.98 -2.38 -0.02 1.80 16 43 H 0.09 1.38 7.05 -2.38 -0.02 1.37 16 44 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -76.07 350.49 -5.10 -81.17 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -0.75 Total: 15.81 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 4.21 Total: -22.67 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -5.56 Total: -118.58 kcal Atomic # 8 Polarization: -53.31 SS G_CDS: -4.52 Total: -57.83 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.27 kcal Atomic # 16 Polarization: 56.18 SS G_CDS: -0.35 Total: 55.83 kcal Total: -76.07 -5.10 -81.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579481154.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.256 kcal (2) G-P(sol) polarization free energy of solvation -76.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds