Wall clock time and date at job start Tue Mar 31 2020 08:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00248 * 2 1 4 4 N 1.46496 * 109.47193 * 124.99644 * 3 2 1 5 5 C 1.46503 * 120.00163 * 270.00164 * 4 3 2 6 6 C 1.50699 * 109.46738 * 269.99669 * 5 4 3 7 7 H 1.07998 * 120.00596 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99366 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00405 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99809 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46921 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47223 * 120.00319 * 10 8 6 13 13 H 1.48501 * 109.47135 * 240.00135 * 10 8 6 14 14 C 1.34775 * 119.99858 * 90.00112 * 4 3 2 15 15 O 1.21281 * 120.00283 * 180.02562 * 14 4 3 16 16 C 1.50703 * 120.00447 * 0.02562 * 14 4 3 17 17 C 1.53000 * 109.47607 * 179.97438 * 16 14 4 18 18 C 1.52998 * 109.47024 * 179.97438 * 17 16 14 19 19 C 1.50699 * 109.47204 * 179.97438 * 18 17 16 20 20 C 1.38250 * 119.97575 * 270.32991 * 19 18 17 21 21 C 1.38194 * 120.02377 * 180.27953 * 20 19 18 22 22 C 1.38460 * 119.97497 * 359.41202 * 21 20 19 23 23 F 1.35105 * 120.02800 * 180.30394 * 22 21 20 24 24 C 1.38467 * 119.94896 * 0.28520 * 22 21 20 25 25 C 1.38197 * 119.97188 * 359.97438 * 24 22 21 26 26 H 1.07995 * 120.00119 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.99925 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99837 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46733 * 4.99512 * 3 2 1 30 30 H 1.08999 * 109.46993 * 245.00082 * 3 2 1 31 31 H 1.08996 * 109.47002 * 30.00276 * 5 4 3 32 32 H 1.09005 * 109.46713 * 149.99876 * 5 4 3 33 33 H 0.97007 * 120.00273 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.46836 * 59.99261 * 16 14 4 35 35 H 1.09003 * 109.46649 * 300.00404 * 16 14 4 36 36 H 1.09000 * 109.46779 * 59.99914 * 17 16 14 37 37 H 1.08995 * 109.46941 * 300.00100 * 17 16 14 38 38 H 1.09007 * 109.46864 * 60.00198 * 18 17 16 39 39 H 1.08994 * 109.47451 * 300.00541 * 18 17 16 40 40 H 1.07998 * 119.98560 * 359.97438 * 20 19 18 41 41 H 1.08002 * 120.01531 * 179.69754 * 21 20 19 42 42 H 1.07998 * 120.01314 * 180.02562 * 24 22 21 43 43 H 1.07994 * 119.98607 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5588 1.8649 2.4249 6 6 2.8443 3.3436 2.4803 7 1 3.3034 3.8370 1.6365 8 6 2.5184 4.0667 3.6082 9 7 1.9589 3.4660 4.6356 10 14 2.8717 5.8998 3.6768 11 1 3.4996 6.3309 2.4020 12 1 1.6010 6.6416 3.8778 13 1 3.7946 6.1841 4.8048 14 6 4.2496 0.8661 0.9824 15 8 5.0196 0.8878 1.9192 16 6 4.6973 0.3182 -0.3482 17 6 6.1538 -0.1394 -0.2475 18 6 6.6079 -0.6962 -1.5982 19 6 8.0427 -1.1464 -1.4992 20 6 9.0659 -0.2584 -1.7747 21 6 10.3818 -0.6719 -1.6898 22 6 10.6756 -1.9726 -1.3170 23 9 11.9619 -2.3761 -1.2277 24 6 9.6501 -2.8593 -1.0353 25 6 8.3348 -2.4451 -1.1260 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6213 1.4025 -0.9314 31 1 1.4887 1.6966 2.5459 32 1 3.0989 1.3602 3.2260 33 1 1.7300 3.9746 5.4293 34 1 4.6126 1.0952 -1.1080 35 1 4.0681 -0.5284 -0.6227 36 1 6.2387 -0.9162 0.5125 37 1 6.7826 0.7075 0.0269 38 1 6.5228 0.0804 -2.3584 39 1 5.9790 -1.5432 -1.8722 40 1 8.8365 0.7573 -2.0610 41 1 11.1809 0.0206 -1.9097 42 1 9.8781 -3.8740 -0.7439 43 1 7.5348 -3.1364 -0.9059 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584301507.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:17 Heat of formation + Delta-G solvation = -71.664569 kcal Electronic energy + Delta-G solvation = -23732.727295 eV Core-core repulsion = 20077.465802 eV Total energy + Delta-G solvation = -3655.261494 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.88861 -40.77634 -40.06278 -37.23073 -35.76753 -35.04543 -33.62209 -32.05083 -32.00020 -29.72437 -27.62523 -26.78630 -24.96528 -23.97973 -23.17645 -21.77117 -21.05343 -19.78624 -18.64764 -18.61006 -17.75501 -17.41748 -17.25250 -16.59301 -16.56491 -16.45353 -16.08763 -15.64659 -15.18276 -14.95917 -14.47656 -14.38480 -14.35940 -14.16289 -13.99078 -13.92141 -13.35175 -12.99240 -12.96251 -12.87452 -12.64484 -12.60423 -12.37008 -12.22582 -12.15527 -11.97405 -11.94246 -11.63599 -11.48979 -10.65406 -10.53145 -10.26869 -10.03460 -9.47225 -9.41885 -8.22176 -6.37086 0.17702 0.30951 1.35578 1.37721 1.38536 1.50285 1.91870 2.35598 2.53447 2.67402 3.07342 3.32490 3.75952 3.80180 3.80544 3.99564 4.11238 4.15471 4.29562 4.33180 4.39021 4.39338 4.49068 4.67186 4.75119 4.76375 4.91045 4.93851 5.00809 5.06234 5.10902 5.16897 5.19132 5.22982 5.25844 5.31573 5.48228 5.55484 5.66990 5.75256 5.79282 5.97900 6.00516 6.07692 6.71524 6.84764 7.29612 7.55192 8.85073 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.002839 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.207160 B = 9858.790838 C =11165.259728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.181 4.181 3 C 0.133 3.867 4 N -0.602 5.602 5 C 0.263 3.737 6 C -0.540 4.540 7 H 0.055 0.945 8 C 0.005 3.995 9 N -0.930 5.930 10 Si 0.968 3.032 11 H -0.265 1.265 12 H -0.269 1.269 13 H -0.283 1.283 14 C 0.490 3.510 15 O -0.602 6.602 16 C -0.124 4.124 17 C -0.093 4.093 18 C -0.069 4.069 19 C -0.094 4.094 20 C -0.095 4.095 21 C -0.160 4.160 22 C 0.065 3.935 23 F -0.153 7.153 24 C -0.159 4.159 25 C -0.093 4.093 26 H 0.115 0.885 27 H 0.095 0.905 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.018 0.982 32 H -0.007 1.007 33 H 0.266 0.734 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.118 -11.184 -19.373 23.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.200 4.200 3 C 0.011 3.989 4 N -0.332 5.332 5 C 0.141 3.859 6 C -0.579 4.579 7 H 0.073 0.927 8 C -0.193 4.193 9 N -0.570 5.570 10 Si 0.792 3.208 11 H -0.189 1.189 12 H -0.194 1.194 13 H -0.209 1.209 14 C 0.280 3.720 15 O -0.484 6.484 16 C -0.164 4.164 17 C -0.131 4.131 18 C -0.106 4.106 19 C -0.094 4.094 20 C -0.113 4.113 21 C -0.178 4.178 22 C 0.046 3.954 23 F -0.132 7.132 24 C -0.177 4.177 25 C -0.111 4.111 26 H 0.134 0.866 27 H 0.114 0.886 28 H 0.137 0.863 29 H 0.090 0.910 30 H 0.131 0.869 31 H 0.036 0.964 32 H 0.011 0.989 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.165 0.835 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.477 -11.142 -18.717 23.030 hybrid contribution 0.451 0.862 1.039 1.423 sum 7.928 -10.281 -17.678 21.933 Atomic orbital electron populations 1.24036 0.95745 1.02700 0.98813 1.23369 0.96685 0.98491 1.01412 1.20840 0.92689 0.96110 0.89291 1.48262 1.12101 1.59946 1.12881 1.18655 0.93629 0.92706 0.80887 1.21751 1.40291 0.94467 1.01351 0.92721 1.25884 0.94716 1.03823 0.94904 1.70068 1.43013 1.38071 1.05828 0.85366 0.78188 0.79012 0.78233 1.18882 1.19443 1.20898 1.21681 0.81144 0.77380 0.91748 1.90640 1.54099 1.58745 1.44911 1.21758 0.98277 1.03457 0.92880 1.21233 0.94013 1.00398 0.97444 1.20615 0.90865 1.02623 0.96546 1.20242 0.96701 0.93839 0.98655 1.21235 0.91103 1.00627 0.98347 1.21366 0.98881 0.94694 1.02889 1.18031 0.78385 0.94757 1.04254 1.91461 1.36231 1.91243 1.94229 1.21380 0.92494 1.00775 1.03084 1.21240 0.96034 0.96303 0.97538 0.86648 0.88641 0.86321 0.91000 0.86879 0.96406 0.98907 0.92473 0.86573 0.86168 0.93093 0.93517 0.88719 0.88383 0.83381 0.83675 0.83512 0.83070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.00 14.32 67.78 0.97 -3.03 16 2 C -0.18 -4.49 9.74 25.65 0.25 -4.24 16 3 C 0.13 3.92 5.65 85.63 0.48 4.40 16 4 N -0.60 -25.00 2.44 -830.50 -2.03 -27.02 16 5 C 0.26 14.33 5.16 85.63 0.44 14.77 16 6 C -0.54 -31.29 9.39 25.60 0.24 -31.05 16 7 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 8 C 0.01 0.31 5.46 84.65 0.46 0.78 16 9 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 10 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 11 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 14 C 0.49 19.66 7.67 87.66 0.67 20.34 16 15 O -0.60 -31.16 15.56 -3.03 -0.05 -31.21 16 16 C -0.12 -2.97 4.25 29.85 0.13 -2.85 16 17 C -0.09 -2.19 4.49 30.59 0.14 -2.05 16 18 C -0.07 -1.02 5.34 29.85 0.16 -0.86 16 19 C -0.09 -1.65 5.13 -19.86 -0.10 -1.76 16 20 C -0.10 -1.69 9.70 22.26 0.22 -1.47 16 21 C -0.16 -3.03 10.03 22.31 0.22 -2.81 16 22 C 0.06 1.36 7.30 22.38 0.16 1.53 16 23 F -0.15 -3.50 17.27 44.97 0.78 -2.72 16 24 C -0.16 -2.93 10.03 22.31 0.22 -2.71 16 25 C -0.09 -1.59 9.70 22.26 0.22 -1.38 16 26 H 0.12 2.13 8.06 -2.91 -0.02 2.11 16 27 H 0.10 2.23 7.84 -2.91 -0.02 2.20 16 28 H 0.12 2.60 7.83 -2.91 -0.02 2.58 16 29 H 0.07 2.31 7.72 -2.39 -0.02 2.29 16 30 H 0.11 2.43 6.44 -2.39 -0.02 2.41 16 31 H 0.02 1.00 8.07 -2.39 -0.02 0.98 16 32 H -0.01 -0.46 7.42 -2.38 -0.02 -0.48 16 33 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 34 H 0.12 2.17 7.40 -2.39 -0.02 2.15 16 35 H 0.12 2.10 7.78 -2.39 -0.02 2.09 16 36 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 37 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 38 H 0.09 1.07 8.09 -2.38 -0.02 1.05 16 39 H 0.10 1.04 8.09 -2.39 -0.02 1.02 16 40 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 41 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 42 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 43 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -77.46 372.06 6.88 -70.58 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.98 Total: 12.25 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 4.89 Total: -12.39 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -1.74 Total: -83.64 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.05 Total: -31.21 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.78 Total: -2.72 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -77.46 6.88 -70.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584301507.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.085 kcal (2) G-P(sol) polarization free energy of solvation -77.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds