Wall clock time and date at job start Tue Mar 31 2020 08:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47200 * 2 1 4 4 C 1.53001 * 109.46989 * 119.99969 * 2 1 3 5 5 C 1.50694 * 109.47168 * 300.00011 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.53000 * 109.46927 * 240.00054 * 2 1 3 14 14 N 1.46497 * 109.47298 * 60.00396 * 13 2 1 15 15 C 1.34774 * 120.00283 * 180.02562 * 14 13 2 16 16 O 1.21280 * 119.99762 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00337 * 179.97438 * 15 14 13 18 18 H 1.09004 * 112.50477 * 50.32441 * 17 15 14 19 19 C 1.52876 * 113.16846 * 180.15841 * 17 15 14 20 20 C 1.51606 * 84.68152 * 115.22342 * 19 17 15 21 21 C 1.38964 * 145.49913 * 179.97438 * 20 19 17 22 22 C 1.37934 * 120.35220 * 180.02562 * 21 20 19 23 23 C 1.38456 * 120.15323 * 0.03202 * 22 21 20 24 24 F 1.35107 * 120.15224 * 180.02562 * 23 22 21 25 25 C 1.38403 * 119.69792 * 0.02562 * 23 22 21 26 26 C 1.38203 * 120.09805 * 359.94514 * 25 23 22 27 27 H 1.08998 * 109.46768 * 300.00007 * 1 2 3 28 28 H 1.08995 * 109.47095 * 59.99957 * 1 2 3 29 29 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47384 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47386 * 300.00499 * 3 2 1 32 32 H 1.09007 * 109.47390 * 60.00059 * 3 2 1 33 33 H 1.09007 * 109.46922 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.46836 * 60.00468 * 4 2 1 35 35 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.46807 * 179.97438 * 13 2 1 37 37 H 1.08992 * 109.47112 * 299.99548 * 13 2 1 38 38 H 0.96997 * 119.99674 * 359.97438 * 14 13 2 39 39 H 1.09000 * 113.99156 * 229.16860 * 19 17 15 40 40 H 1.08998 * 113.98851 * 1.27078 * 19 17 15 41 41 H 1.07997 * 119.82344 * 0.05705 * 21 20 19 42 42 H 1.08003 * 119.92207 * 180.02562 * 22 21 20 43 43 H 1.07999 * 119.94854 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5376 -0.0109 2.4797 6 1 0.9164 0.8670 2.3807 7 6 1.8712 -0.4817 3.7320 8 7 2.6273 -1.5510 3.8526 9 14 1.2491 0.3994 5.2572 10 1 1.7440 -0.3008 6.4697 11 1 1.7441 1.7993 5.2567 12 1 -0.2359 0.3994 5.2577 13 6 2.0400 -0.7212 -1.2493 14 7 1.5517 -0.0306 -2.4454 15 6 1.8768 -0.4913 -3.6695 16 8 2.5740 -1.4775 -3.7808 17 6 1.3741 0.2188 -4.9000 18 1 1.5649 1.2916 -4.8698 19 6 1.8325 -0.4373 -6.2025 20 6 0.3576 -0.7150 -6.4168 21 6 -0.5908 -1.2771 -7.2627 22 6 -1.9290 -1.2430 -6.9300 23 6 -2.3371 -0.6467 -5.7490 24 9 -3.6478 -0.6137 -5.4229 25 6 -1.3962 -0.0844 -4.9039 26 6 -0.0556 -0.1197 -5.2380 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7216 1.2490 34 1 1.6767 -1.7490 1.2492 35 1 2.8622 -1.8819 4.7337 36 1 3.1300 -0.7208 -1.2495 37 1 1.6767 -1.7489 -1.2492 38 1 0.9938 0.7578 -2.3564 39 1 2.2618 0.2595 -6.9225 40 1 2.4364 -1.3333 -6.0588 41 1 -0.2784 -1.7436 -8.1853 42 1 -2.6602 -1.6824 -7.5924 43 1 -1.7099 0.3814 -3.9815 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588177701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:24 Heat of formation + Delta-G solvation = -37.817030 kcal Electronic energy + Delta-G solvation = -24496.487598 eV Core-core repulsion = 20842.693844 eV Total energy + Delta-G solvation = -3653.793754 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.12385 -41.26249 -39.09438 -37.16839 -35.21143 -33.67159 -32.11649 -31.15023 -28.09073 -27.14733 -26.55150 -26.54532 -24.90413 -23.12900 -22.38555 -21.22612 -19.97365 -18.43373 -17.63438 -17.15390 -16.83138 -16.35378 -15.82929 -15.58151 -15.42660 -15.13147 -14.54966 -14.47007 -14.20404 -13.83889 -13.66552 -13.20659 -13.02736 -12.84338 -12.60225 -12.16917 -12.10833 -12.06323 -12.00664 -11.66085 -11.19007 -11.02582 -10.90262 -10.88034 -10.65550 -10.43819 -10.29183 -10.03626 -9.90708 -9.31062 -9.15073 -8.95910 -8.80295 -8.72285 -8.37276 -6.01468 -4.03008 0.78410 0.88784 2.57850 3.17148 3.30980 3.36222 3.36575 3.39444 3.60212 3.96247 4.13595 4.25149 4.43794 4.64663 4.79138 4.93259 5.00944 5.18994 5.33618 5.33907 5.44469 5.47430 5.58727 5.63260 5.70960 5.76767 5.81376 5.89345 6.13037 6.18350 6.23651 6.30173 6.35361 6.50936 6.56017 6.59772 6.71265 7.02666 7.04399 7.09240 7.61121 7.65022 7.73727 7.96884 8.30113 8.39013 9.01528 9.60198 11.09960 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.003000 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.163797 B = 9331.225766 C =10173.359874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.288 1.288 11 H -0.277 1.277 12 H -0.278 1.278 13 C 0.127 3.873 14 N -0.715 5.715 15 C 0.522 3.478 16 O -0.537 6.537 17 C -0.064 4.064 18 H 0.121 0.879 19 C -0.056 4.056 20 C -0.126 4.126 21 C -0.072 4.072 22 C -0.147 4.147 23 C 0.099 3.901 24 F -0.136 7.136 25 C -0.116 4.116 26 C -0.097 4.097 27 H 0.067 0.933 28 H 0.028 0.972 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.028 0.972 32 H 0.067 0.933 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.399 0.601 39 H 0.102 0.898 40 H 0.116 0.884 41 H 0.130 0.870 42 H 0.139 0.861 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.023 5.013 -22.518 23.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.214 1.214 11 H -0.203 1.203 12 H -0.203 1.203 13 C 0.005 3.995 14 N -0.366 5.366 15 C 0.306 3.694 16 O -0.415 6.415 17 C -0.086 4.086 18 H 0.139 0.861 19 C -0.093 4.093 20 C -0.126 4.126 21 C -0.091 4.091 22 C -0.165 4.165 23 C 0.080 3.920 24 F -0.115 7.115 25 C -0.135 4.135 26 C -0.098 4.098 27 H 0.086 0.914 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.234 0.766 39 H 0.121 0.879 40 H 0.134 0.866 41 H 0.148 0.852 42 H 0.156 0.844 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.497 4.173 -22.418 23.456 hybrid contribution -1.001 0.809 1.156 1.730 sum -6.498 4.982 -21.262 22.784 Atomic orbital electron populations 1.21762 0.95265 1.01195 1.00218 1.20912 0.95481 0.95886 0.95047 1.21761 1.00565 0.95846 1.00247 1.19080 0.96341 0.95207 0.89429 1.21142 1.31290 1.12135 0.90529 0.92307 1.25013 0.95288 0.95066 0.99084 1.69955 1.36845 1.22995 1.23583 0.86708 0.79160 0.79762 0.82653 1.21381 1.20315 1.20316 1.21671 0.98982 0.96069 0.82824 1.46180 1.52757 1.31887 1.05782 1.19978 0.80505 0.84645 0.84258 1.90699 1.38211 1.26029 1.86534 1.21385 0.89982 1.02259 0.94934 0.86091 1.21779 0.91681 1.02091 0.93757 1.22462 0.96776 0.97970 0.95369 1.20357 0.90819 0.98410 0.99466 1.20975 0.96786 1.02157 0.96613 1.17313 0.77942 1.01401 0.95383 1.91522 1.32502 1.94729 1.92708 1.20087 0.90721 1.02053 1.00610 1.21010 0.92538 0.99160 0.97080 0.91381 0.95313 0.93359 0.93312 0.95272 0.91396 0.96336 0.96370 0.92955 0.91617 0.91761 0.76568 0.87942 0.86592 0.85164 0.84355 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 2 C -0.07 -1.35 0.54 -154.51 -0.08 -1.44 16 3 C -0.13 -2.16 8.05 37.15 0.30 -1.86 16 4 C 0.04 0.90 4.04 -27.89 -0.11 0.78 16 5 C -0.51 -13.50 7.65 -34.44 -0.26 -13.76 16 6 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.13 2.20 4.56 -4.04 -0.02 2.18 16 14 N -0.72 -9.95 4.96 -60.30 -0.30 -10.25 16 15 C 0.52 7.32 7.33 -10.99 -0.08 7.24 16 16 O -0.54 -9.56 15.66 5.56 0.09 -9.48 16 17 C -0.06 -0.65 4.14 -96.57 -0.40 -1.05 16 18 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 19 C -0.06 -0.51 7.92 -27.50 -0.22 -0.72 16 20 C -0.13 -1.25 7.32 -107.47 -0.79 -2.04 16 21 C -0.07 -0.64 10.04 -39.42 -0.40 -1.03 16 22 C -0.15 -1.33 10.01 -39.61 -0.40 -1.73 16 23 C 0.10 1.06 7.31 -39.44 -0.29 0.77 16 24 F -0.14 -1.56 17.27 2.25 0.04 -1.52 16 25 C -0.12 -1.25 10.02 -39.53 -0.40 -1.65 16 26 C -0.10 -1.04 7.05 -104.56 -0.74 -1.78 16 27 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 28 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 32 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 33 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.40 4.68 6.16 -40.82 -0.25 4.43 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.12 1.22 7.02 -51.93 -0.36 0.85 16 41 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 43 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 354.96 15.07 5.35 5.35 Total: -1.00 -31.23 354.96 -8.88 -40.11 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.10 Total: 1.79 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -3.68 Total: -16.51 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.44 Total: -35.83 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.23 -8.88 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588177701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.295 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds