Wall clock time and date at job start Tue Mar 31 2020 08:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47200 * 2 1 4 4 C 1.53001 * 109.46989 * 119.99969 * 2 1 3 5 5 C 1.50694 * 109.47168 * 300.00011 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.53000 * 109.46927 * 240.00054 * 2 1 3 14 14 N 1.46497 * 109.47298 * 60.00396 * 13 2 1 15 15 C 1.34774 * 120.00283 * 180.02562 * 14 13 2 16 16 O 1.21280 * 119.99762 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00337 * 179.97438 * 15 14 13 18 18 H 1.09004 * 112.50477 * 50.32441 * 17 15 14 19 19 C 1.52876 * 113.16846 * 180.15841 * 17 15 14 20 20 C 1.51606 * 84.68152 * 115.22342 * 19 17 15 21 21 C 1.38964 * 145.49913 * 179.97438 * 20 19 17 22 22 C 1.37934 * 120.35220 * 180.02562 * 21 20 19 23 23 C 1.38456 * 120.15323 * 0.03202 * 22 21 20 24 24 F 1.35107 * 120.15224 * 180.02562 * 23 22 21 25 25 C 1.38403 * 119.69792 * 0.02562 * 23 22 21 26 26 C 1.38203 * 120.09805 * 359.94514 * 25 23 22 27 27 H 1.08998 * 109.46768 * 300.00007 * 1 2 3 28 28 H 1.08995 * 109.47095 * 59.99957 * 1 2 3 29 29 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47384 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47386 * 300.00499 * 3 2 1 32 32 H 1.09007 * 109.47390 * 60.00059 * 3 2 1 33 33 H 1.09007 * 109.46922 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.46836 * 60.00468 * 4 2 1 35 35 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.46807 * 179.97438 * 13 2 1 37 37 H 1.08992 * 109.47112 * 299.99548 * 13 2 1 38 38 H 0.96997 * 119.99674 * 359.97438 * 14 13 2 39 39 H 1.09000 * 113.99156 * 229.16860 * 19 17 15 40 40 H 1.08998 * 113.98851 * 1.27078 * 19 17 15 41 41 H 1.07997 * 119.82344 * 0.05705 * 21 20 19 42 42 H 1.08003 * 119.92207 * 180.02562 * 22 21 20 43 43 H 1.07999 * 119.94854 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5376 -0.0109 2.4797 6 1 0.9164 0.8670 2.3807 7 6 1.8712 -0.4817 3.7320 8 7 2.6273 -1.5510 3.8526 9 14 1.2491 0.3994 5.2572 10 1 1.7440 -0.3008 6.4697 11 1 1.7441 1.7993 5.2567 12 1 -0.2359 0.3994 5.2577 13 6 2.0400 -0.7212 -1.2493 14 7 1.5517 -0.0306 -2.4454 15 6 1.8768 -0.4913 -3.6695 16 8 2.5740 -1.4775 -3.7808 17 6 1.3741 0.2188 -4.9000 18 1 1.5649 1.2916 -4.8698 19 6 1.8325 -0.4373 -6.2025 20 6 0.3576 -0.7150 -6.4168 21 6 -0.5908 -1.2771 -7.2627 22 6 -1.9290 -1.2430 -6.9300 23 6 -2.3371 -0.6467 -5.7490 24 9 -3.6478 -0.6137 -5.4229 25 6 -1.3962 -0.0844 -4.9039 26 6 -0.0556 -0.1197 -5.2380 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7216 1.2490 34 1 1.6767 -1.7490 1.2492 35 1 2.8622 -1.8819 4.7337 36 1 3.1300 -0.7208 -1.2495 37 1 1.6767 -1.7489 -1.2492 38 1 0.9938 0.7578 -2.3564 39 1 2.2618 0.2595 -6.9225 40 1 2.4364 -1.3333 -6.0588 41 1 -0.2784 -1.7436 -8.1853 42 1 -2.6602 -1.6824 -7.5924 43 1 -1.7099 0.3814 -3.9815 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588177701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:23 Heat of formation + Delta-G solvation = -55.042387 kcal Electronic energy + Delta-G solvation = -24497.234545 eV Core-core repulsion = 20842.693844 eV Total energy + Delta-G solvation = -3654.540702 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.93568 -42.11627 -40.22775 -38.61650 -36.01493 -35.26845 -33.93744 -31.87730 -29.34921 -28.72343 -27.97340 -27.69392 -26.00541 -24.69043 -23.39967 -22.12673 -21.02095 -19.82392 -18.61659 -18.37076 -18.11739 -17.61450 -16.88110 -16.60071 -16.44366 -16.31988 -16.16217 -15.62923 -15.25788 -14.85004 -14.76067 -14.58568 -14.37555 -14.04611 -13.94441 -13.68952 -13.45154 -12.85872 -12.84336 -12.75444 -12.73592 -12.59752 -12.37436 -12.33427 -12.23061 -12.01262 -11.66796 -11.54512 -11.22348 -10.92836 -10.82836 -10.51078 -10.09640 -9.98944 -9.49117 -8.14425 -6.22365 0.03917 0.16157 1.42315 1.44269 1.50621 1.51468 2.15897 2.44381 2.53492 2.80908 3.20012 3.25408 3.40315 3.52080 3.81737 3.97363 4.00016 4.06980 4.21437 4.24567 4.32385 4.49272 4.62497 4.67669 4.71160 4.77621 4.84383 4.95074 4.96338 5.06319 5.07851 5.10823 5.12235 5.19778 5.38169 5.45614 5.49344 5.53067 5.56357 5.56942 5.79461 5.84453 5.89390 6.29628 6.53682 6.92776 7.20199 7.45495 8.97945 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.003000 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.163797 B = 9331.225766 C =10173.359874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.065 4.065 3 C -0.121 4.121 4 C 0.041 3.959 5 C -0.515 4.515 6 H 0.073 0.927 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.291 1.291 11 H -0.265 1.265 12 H -0.267 1.267 13 C 0.141 3.859 14 N -0.705 5.705 15 C 0.520 3.480 16 O -0.580 6.580 17 C -0.055 4.055 18 H 0.157 0.843 19 C -0.050 4.050 20 C -0.133 4.133 21 C -0.074 4.074 22 C -0.144 4.144 23 C 0.078 3.922 24 F -0.145 7.145 25 C -0.127 4.127 26 C -0.114 4.114 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.033 0.967 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.055 0.945 33 H -0.013 1.013 34 H -0.017 1.017 35 H 0.260 0.740 36 H 0.050 0.950 37 H 0.042 0.958 38 H 0.413 0.587 39 H 0.137 0.863 40 H 0.098 0.902 41 H 0.157 0.843 42 H 0.160 0.840 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.174 7.260 -24.406 26.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.003 3.997 5 C -0.553 4.553 6 H 0.091 0.909 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.217 1.217 11 H -0.190 1.190 12 H -0.192 1.192 13 C 0.017 3.983 14 N -0.357 5.357 15 C 0.307 3.693 16 O -0.460 6.460 17 C -0.076 4.076 18 H 0.174 0.826 19 C -0.087 4.087 20 C -0.133 4.133 21 C -0.092 4.092 22 C -0.162 4.162 23 C 0.059 3.941 24 F -0.124 7.124 25 C -0.146 4.146 26 C -0.114 4.114 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.005 0.995 34 H 0.002 0.998 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.251 0.749 39 H 0.155 0.845 40 H 0.116 0.884 41 H 0.175 0.825 42 H 0.178 0.822 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.677 6.461 -24.324 26.038 hybrid contribution -0.635 0.045 1.672 1.790 sum -7.313 6.506 -22.652 24.676 Atomic orbital electron populations 1.21694 0.93811 1.00777 1.01617 1.20711 0.96518 0.96501 0.92812 1.21692 1.00048 0.94391 1.01715 1.18958 0.94318 0.94066 0.92335 1.21572 1.30490 1.12160 0.91098 0.90920 1.25948 0.95645 0.95844 1.02720 1.70116 1.38740 1.24970 1.24167 0.85606 0.78923 0.78824 0.78337 1.21715 1.19023 1.19238 1.21221 0.97979 0.95189 0.83920 1.45979 1.52814 1.32063 1.04836 1.20722 0.79432 0.84084 0.85093 1.90687 1.40091 1.28008 1.87174 1.21437 0.89517 1.03764 0.92864 0.82590 1.21834 0.91018 1.02059 0.93804 1.22733 0.97443 0.97721 0.95396 1.20681 0.90419 0.97819 1.00262 1.21283 0.97548 1.01218 0.96188 1.17574 0.77683 1.02519 0.96367 1.91495 1.33079 1.94911 1.92885 1.20228 0.90992 1.02331 1.01001 1.21092 0.92531 1.00089 0.97734 0.92537 0.91245 0.94750 0.94198 0.90989 0.92639 0.99459 0.99831 0.93160 0.93124 0.93983 0.74866 0.84526 0.88372 0.82513 0.82236 0.84151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.08 8.05 71.98 0.58 -3.50 16 2 C -0.06 -2.41 0.54 -52.18 -0.03 -2.44 16 3 C -0.12 -3.92 8.05 71.98 0.58 -3.34 16 4 C 0.04 2.07 4.04 29.85 0.12 2.19 16 5 C -0.52 -27.51 7.65 25.60 0.20 -27.32 16 6 H 0.07 3.61 5.68 -2.91 -0.02 3.60 16 7 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 8 N -0.94 -57.16 13.29 21.45 0.28 -56.88 16 9 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 10 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 13 C 0.14 4.94 4.56 86.38 0.39 5.33 16 14 N -0.71 -18.49 4.96 -463.08 -2.30 -20.79 16 15 C 0.52 13.90 7.33 87.66 0.64 14.54 16 16 O -0.58 -20.66 15.66 -3.03 -0.05 -20.71 16 17 C -0.06 -0.96 4.14 -14.65 -0.06 -1.02 16 18 H 0.16 1.61 8.14 -2.38 -0.02 1.59 16 19 C -0.05 -0.77 7.92 30.10 0.24 -0.53 16 20 C -0.13 -2.31 7.32 -21.71 -0.16 -2.47 16 21 C -0.07 -1.10 10.04 22.37 0.22 -0.88 16 22 C -0.14 -2.30 10.01 22.25 0.22 -2.07 16 23 C 0.08 1.56 7.31 22.36 0.16 1.72 16 24 F -0.14 -3.19 17.27 44.97 0.78 -2.41 16 25 C -0.13 -2.53 10.02 22.30 0.22 -2.30 16 26 C -0.11 -2.17 7.05 -19.82 -0.14 -2.31 16 27 H 0.06 2.03 6.62 -2.39 -0.02 2.01 16 28 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 29 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.70 6.86 -2.39 -0.02 1.69 16 32 H 0.05 1.94 6.62 -2.38 -0.02 1.93 16 33 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 34 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 35 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.41 8.34 6.16 -92.71 -0.57 7.77 16 39 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.10 1.93 7.02 -2.39 -0.02 1.91 16 41 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 42 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 43 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -71.00 354.96 4.86 -66.14 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.46 Total: 13.34 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 3.66 Total: -24.20 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -2.01 Total: -77.66 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.05 Total: -20.71 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.41 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -71.00 4.86 -66.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588177701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.097 kcal (2) G-P(sol) polarization free energy of solvation -70.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds