Wall clock time and date at job start Tue Mar 31 2020 08:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53003 * 109.46893 * 2 1 4 4 C 1.53002 * 109.46835 * 120.00125 * 2 1 3 5 5 C 1.50696 * 109.46997 * 299.99655 * 4 2 1 6 6 H 1.07999 * 120.00319 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99717 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 C 1.52997 * 109.46859 * 240.00295 * 2 1 3 14 14 N 1.46497 * 109.47333 * 60.00123 * 13 2 1 15 15 C 1.34779 * 120.00021 * 179.97438 * 14 13 2 16 16 O 1.21285 * 119.99795 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00162 * 179.97438 * 15 14 13 18 18 H 1.08993 * 112.83025 * 311.11347 * 17 15 14 19 19 C 1.53513 * 113.58735 * 179.97438 * 17 15 14 20 20 C 1.51622 * 87.25073 * 245.41170 * 19 17 15 21 21 C 1.38390 * 147.49186 * 180.02562 * 20 19 17 22 22 C 1.38045 * 120.36181 * 179.97438 * 21 20 19 23 23 C 1.38474 * 119.92893 * 0.02562 * 22 21 20 24 24 F 1.35101 * 120.05321 * 180.02562 * 23 22 21 25 25 C 1.38326 * 119.90012 * 359.97438 * 23 22 21 26 26 C 1.38335 * 120.30024 * 0.02562 * 25 23 22 27 27 H 1.08996 * 109.46838 * 299.99840 * 1 2 3 28 28 H 1.08996 * 109.46879 * 60.00194 * 1 2 3 29 29 H 1.09004 * 109.46811 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46624 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46996 * 300.00361 * 3 2 1 32 32 H 1.09005 * 109.46920 * 59.99887 * 3 2 1 33 33 H 1.09005 * 109.46767 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.47113 * 60.00346 * 4 2 1 35 35 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.46889 * 179.97438 * 13 2 1 37 37 H 1.09004 * 109.47073 * 299.99429 * 13 2 1 38 38 H 0.96994 * 120.00492 * 359.97438 * 14 13 2 39 39 H 1.09006 * 113.58910 * 0.02562 * 19 17 15 40 40 H 1.09000 * 113.59025 * 130.81637 * 19 17 15 41 41 H 1.08004 * 119.82103 * 0.02562 * 21 20 19 42 42 H 1.08000 * 120.04425 * 180.02562 * 22 21 20 43 43 H 1.07996 * 119.84518 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5377 -0.0109 2.4797 6 1 0.9166 0.8670 2.3806 7 6 1.8712 -0.4817 3.7320 8 7 1.4325 0.1380 4.8058 9 14 2.9462 -1.9997 3.9033 10 1 2.0886 -3.2111 3.9488 11 1 3.8666 -2.0882 2.7412 12 1 3.7382 -1.9065 5.1560 13 6 2.0400 -0.7212 -1.2493 14 7 1.5517 -0.0305 -2.4454 15 6 1.8777 -0.4907 -3.6695 16 8 2.5757 -1.4763 -3.7808 17 6 1.3750 0.2194 -4.9000 18 1 0.3045 0.4214 -4.8640 19 6 1.8345 -0.4282 -6.2138 20 6 2.6245 0.8389 -6.4770 21 6 3.4738 1.5301 -7.3233 22 6 3.9094 2.7975 -6.9921 23 6 3.4960 3.3823 -5.8069 24 9 3.9203 4.6228 -5.4806 25 6 2.6471 2.6950 -4.9582 26 6 2.2090 1.4249 -5.2874 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 3.1301 -0.7209 1.2495 34 1 1.6767 -1.7490 1.2492 35 1 1.6668 -0.1935 5.6868 36 1 3.1301 -0.7208 -1.2495 37 1 1.6767 -1.7489 -1.2493 38 1 0.9938 0.7579 -2.3565 39 1 2.4589 -1.3101 -6.0704 40 1 1.0252 -0.5934 -6.9251 41 1 3.7970 1.0758 -8.2483 42 1 4.5718 3.3324 -7.6565 43 1 2.3249 3.1522 -4.0343 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588177702.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:27 Heat of formation + Delta-G solvation = -35.978619 kcal Electronic energy + Delta-G solvation = -24516.878986 eV Core-core repulsion = 20863.164952 eV Total energy + Delta-G solvation = -3653.714035 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.14096 -41.19029 -39.17280 -37.28412 -35.19932 -33.73103 -32.13126 -31.18205 -28.28992 -27.71362 -26.61534 -26.59681 -24.91295 -22.97155 -22.20594 -21.21857 -20.04961 -18.42935 -17.65962 -17.21997 -16.88454 -16.78717 -15.85932 -15.67959 -15.44244 -15.23460 -14.57923 -14.34291 -14.08831 -13.86663 -13.74164 -13.52644 -13.12965 -12.79265 -12.68800 -12.34133 -12.28694 -12.15164 -12.02972 -11.58021 -11.27950 -11.16252 -11.03454 -10.96105 -10.64674 -10.52839 -10.14818 -10.00654 -9.76994 -9.55578 -9.24817 -9.02119 -8.89856 -8.75414 -8.55360 -6.06111 -4.03548 0.74645 0.87345 2.49880 3.11641 3.30081 3.32150 3.38403 3.42209 3.59894 3.89717 4.08958 4.20661 4.44006 4.62241 4.73884 4.87691 4.98113 5.18522 5.26292 5.30187 5.34546 5.42109 5.48504 5.58877 5.60183 5.72922 5.78208 5.85892 6.06100 6.07270 6.13049 6.26499 6.28094 6.41847 6.53576 6.55925 6.63142 6.85908 6.98318 7.01806 7.16916 7.33618 7.55618 7.76835 8.22389 8.50734 8.97795 9.56538 11.06615 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.020530 B = 0.003081 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.557999 B = 9086.119225 C = 9741.489237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.129 4.129 4 C -0.002 4.002 5 C -0.512 4.512 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.265 1.265 12 H -0.289 1.289 13 C 0.125 3.875 14 N -0.715 5.715 15 C 0.524 3.476 16 O -0.538 6.538 17 C -0.067 4.067 18 H 0.125 0.875 19 C -0.053 4.053 20 C -0.127 4.127 21 C -0.069 4.069 22 C -0.145 4.145 23 C 0.098 3.902 24 F -0.136 7.136 25 C -0.120 4.120 26 C -0.095 4.095 27 H 0.073 0.927 28 H 0.031 0.969 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.018 0.982 34 H 0.014 0.986 35 H 0.262 0.738 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.401 0.599 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.131 0.869 42 H 0.140 0.860 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.095 3.708 -24.949 25.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.064 4.064 3 C -0.186 4.186 4 C -0.039 4.039 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.190 1.190 12 H -0.215 1.215 13 C 0.002 3.998 14 N -0.366 5.366 15 C 0.309 3.691 16 O -0.415 6.415 17 C -0.088 4.088 18 H 0.143 0.857 19 C -0.090 4.090 20 C -0.127 4.127 21 C -0.088 4.088 22 C -0.164 4.164 23 C 0.079 3.921 24 F -0.115 7.115 25 C -0.139 4.139 26 C -0.096 4.096 27 H 0.092 0.908 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.036 0.964 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.236 0.764 39 H 0.131 0.869 40 H 0.118 0.882 41 H 0.149 0.851 42 H 0.158 0.842 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.444 3.051 -24.787 24.978 hybrid contribution 0.415 -0.018 0.501 0.651 sum 0.859 3.032 -24.286 24.490 Atomic orbital electron populations 1.21781 0.94737 1.01288 1.00806 1.20700 0.95859 0.95918 0.93886 1.21776 1.00481 0.95572 1.00775 1.19589 0.96292 0.95484 0.92584 1.21074 1.31874 1.13391 0.88611 0.90390 1.25000 0.95685 0.96751 0.95980 1.69902 1.45896 1.40566 0.97897 0.86859 0.81342 0.83895 0.77680 1.20356 1.19002 1.21482 1.21685 0.98976 0.96073 0.83070 1.46139 1.52921 1.31848 1.05662 1.19911 0.80592 0.84409 0.84184 1.90699 1.37773 1.26460 1.86562 1.21618 1.00774 0.91694 0.94748 0.85737 1.21814 0.98329 0.95474 0.93407 1.22295 0.97375 0.97654 0.95372 1.20108 0.96184 0.93023 0.99439 1.21017 1.02619 0.96242 0.96538 1.17323 0.98254 0.81171 0.95329 1.91522 1.88389 1.38860 1.92720 1.20229 0.98814 0.94226 1.00614 1.21518 0.98347 0.92998 0.96746 0.90826 0.95022 0.93350 0.93398 0.95070 0.90804 0.96375 0.96791 0.92772 0.91765 0.91617 0.76390 0.86919 0.88193 0.85111 0.84240 0.84712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 2 C -0.06 -1.13 0.54 -154.50 -0.08 -1.21 16 3 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 4 C 0.00 -0.04 3.11 -27.88 -0.09 -0.12 16 5 C -0.51 -13.56 8.20 -34.44 -0.28 -13.84 16 6 H 0.08 2.18 5.92 -52.49 -0.31 1.87 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 9 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.12 2.02 4.56 -4.05 -0.02 2.00 16 14 N -0.71 -9.44 4.96 -60.29 -0.30 -9.74 16 15 C 0.52 7.03 7.36 -10.99 -0.08 6.95 16 16 O -0.54 -9.19 15.70 5.55 0.09 -9.10 16 17 C -0.07 -0.65 4.33 -92.22 -0.40 -1.05 16 18 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 19 C -0.05 -0.46 7.77 -27.18 -0.21 -0.67 16 20 C -0.13 -1.22 7.49 -103.86 -0.78 -2.00 16 21 C -0.07 -0.59 10.02 -39.60 -0.40 -0.99 16 22 C -0.15 -1.28 10.02 -39.57 -0.40 -1.68 16 23 C 0.10 1.04 7.30 -39.46 -0.29 0.75 16 24 F -0.14 -1.55 17.27 2.25 0.04 -1.51 16 25 C -0.12 -1.27 10.01 -39.51 -0.40 -1.67 16 26 C -0.10 -0.99 6.97 -103.88 -0.72 -1.72 16 27 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 28 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 32 H 0.07 1.42 6.62 -51.93 -0.34 1.07 16 33 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 34 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.40 4.46 6.16 -40.82 -0.25 4.21 16 39 H 0.11 1.14 7.04 -51.93 -0.37 0.78 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 351.56 15.07 5.30 5.30 Total: -1.00 -31.57 351.56 -8.48 -40.05 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.07 Total: 1.78 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -3.64 Total: -17.19 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.47 Total: -36.05 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.57 -8.48 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588177702.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.073 kcal (2) G-P(sol) polarization free energy of solvation -31.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds