Wall clock time and date at job start Tue Mar 31 2020 08:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.34766 * 125.00625 * 2 1 4 4 C 1.38070 * 108.94136 * 179.97438 * 3 2 1 5 5 C 1.43202 * 126.66381 * 179.97438 * 4 3 2 6 6 N 4.72780 * 151.21108 * 359.97438 * 2 1 3 7 7 C 1.46974 * 106.66213 * 0.22587 * 4 3 2 8 8 N 1.32626 * 126.87427 * 179.74848 * 7 4 3 9 9 C 1.33969 * 120.00231 * 356.21632 * 8 7 4 10 10 O 1.21823 * 119.99955 * 65.85737 * 9 8 7 11 11 N 1.34775 * 120.00215 * 245.86206 * 9 8 7 12 12 C 1.46499 * 120.00145 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46919 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47429 * 299.99892 * 13 12 11 15 15 C 1.53002 * 109.46875 * 60.00096 * 13 12 11 16 16 C 1.53006 * 109.47138 * 179.97438 * 13 12 11 17 17 C 1.50697 * 109.47259 * 180.02562 * 16 13 12 18 18 H 1.08007 * 119.99643 * 0.02562 * 17 16 13 19 19 C 1.37875 * 119.99932 * 180.02562 * 17 16 13 20 20 N 1.31506 * 120.00208 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99849 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47458 * 89.99716 * 21 19 17 23 23 H 1.48499 * 109.46989 * 209.99939 * 21 19 17 24 24 H 1.48510 * 109.46889 * 329.99522 * 21 19 17 25 25 N 1.37185 * 106.24754 * 359.63345 * 7 4 3 26 26 H 0.97002 * 125.91497 * 180.10879 * 25 7 4 27 27 H 1.08994 * 109.47029 * 90.02338 * 1 2 3 28 28 H 1.08998 * 109.46671 * 210.02638 * 1 2 3 29 29 H 1.08996 * 109.46666 * 330.02316 * 1 2 3 30 30 H 1.08004 * 125.52718 * 359.94304 * 3 2 1 31 31 H 0.97005 * 119.99714 * 359.97438 * 11 9 8 32 32 H 1.09000 * 109.47130 * 299.99171 * 12 11 9 33 33 H 1.09000 * 109.47084 * 59.99909 * 12 11 9 34 34 H 1.09002 * 109.47006 * 60.00223 * 14 13 12 35 35 H 1.08998 * 109.47447 * 180.02562 * 14 13 12 36 36 H 1.09000 * 109.47356 * 300.00136 * 14 13 12 37 37 H 1.09000 * 109.47643 * 60.00109 * 15 13 12 38 38 H 1.09008 * 109.46853 * 180.02562 * 15 13 12 39 39 H 1.09002 * 109.47319 * 299.99629 * 15 13 12 40 40 H 1.08995 * 109.47283 * 300.00641 * 16 13 12 41 41 H 1.09003 * 109.46391 * 60.00025 * 16 13 12 42 42 H 0.96995 * 120.00330 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2382 1.1039 0.0000 4 6 3.5650 0.7218 0.0006 5 6 4.7046 1.5890 0.0003 6 7 5.6086 2.2768 -0.0010 7 6 3.5803 -0.7479 -0.0046 8 7 4.6495 -1.5326 -0.0105 9 6 5.8743 -0.9954 -0.0887 10 8 6.2976 -0.3086 0.8240 11 7 6.6381 -1.2148 -1.1773 12 6 7.9772 -0.6269 -1.2631 13 6 8.6262 -1.0281 -2.5893 14 6 8.7327 -2.5525 -2.6645 15 6 7.7702 -0.5187 -3.7507 16 6 10.0245 -0.4136 -2.6793 17 6 10.6636 -0.8082 -3.9858 18 1 10.1259 -1.4343 -4.6825 19 6 11.9345 -0.3700 -4.2916 20 7 12.5890 0.3928 -3.4435 21 14 12.7264 -0.8586 -5.9115 22 1 12.3968 0.1520 -6.9483 23 1 14.1997 -0.9300 -5.7405 24 1 12.2120 -2.1864 -6.3332 25 7 2.2674 -1.1454 0.0005 26 1 1.9504 -2.0622 0.0004 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3632 -0.8898 0.5142 29 1 -0.3632 0.8902 0.5135 30 1 1.8783 2.1222 -0.0009 31 1 6.3010 -1.7619 -1.9040 32 1 7.9013 0.4591 -1.2093 33 1 8.5871 -0.9901 -0.4360 34 1 7.7363 -2.9899 -2.6006 35 1 9.1955 -2.8383 -3.6091 36 1 9.3425 -2.9154 -1.8371 37 1 7.6943 0.5673 -3.6972 38 1 8.2323 -0.8050 -4.6955 39 1 6.7738 -0.9561 -3.6868 40 1 9.9483 0.6724 -2.6259 41 1 10.6345 -0.7761 -1.8518 42 1 13.4832 0.7008 -3.6585 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588259913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:31 Heat of formation + Delta-G solvation = 99.844936 kcal Electronic energy + Delta-G solvation = -24664.501279 eV Core-core repulsion = 21068.889709 eV Total energy + Delta-G solvation = -3595.611571 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.73455 -39.37256 -37.07358 -36.04685 -34.87341 -33.28298 -32.23174 -32.11931 -31.61774 -27.22772 -26.86903 -26.34972 -25.84581 -23.61108 -22.77625 -22.33463 -20.54984 -19.14332 -18.01916 -17.01763 -16.71441 -16.44384 -16.19266 -15.90359 -15.57188 -15.19385 -14.43552 -14.21773 -13.91213 -13.88090 -13.61329 -13.24178 -12.98310 -12.85999 -12.64046 -12.57519 -12.29982 -11.97068 -11.93753 -11.23407 -11.00525 -10.89776 -10.75671 -10.51032 -10.42104 -10.23822 -10.13306 -9.89889 -9.71525 -9.21449 -8.97602 -8.79504 -8.36862 -8.25545 -7.79718 -5.89235 -3.90147 0.74272 0.79340 1.94795 2.79698 2.92522 3.34233 3.37861 3.44194 3.46600 3.73697 4.00847 4.03390 4.06439 4.33198 4.53556 4.56900 4.60452 4.69524 4.97143 5.36969 5.45962 5.69888 5.82358 5.92427 5.97352 6.36071 6.41296 6.45219 6.52003 6.60262 6.77766 6.78447 6.88162 7.03588 7.21625 7.23032 7.30907 7.75811 7.77978 7.91436 7.96007 8.10293 8.24545 8.52779 9.04026 9.14806 9.72087 11.22384 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.027849 B = 0.002880 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.181476 B = 9718.892756 C = 9891.705099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.373 5.373 3 C 0.218 3.782 4 C -0.226 4.226 5 C 0.276 3.724 6 N -0.395 5.395 7 C 0.513 3.487 8 N -0.643 5.643 9 C 0.681 3.319 10 O -0.579 6.579 11 N -0.715 5.715 12 C 0.141 3.859 13 C -0.071 4.071 14 C -0.126 4.126 15 C -0.124 4.124 16 C 0.036 3.964 17 C -0.508 4.508 18 H 0.059 0.941 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.888 3.112 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 N -0.493 5.493 26 H 0.453 0.547 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.208 0.792 31 H 0.396 0.604 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.029 0.971 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.065 0.935 39 H 0.028 0.972 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.242 -1.702 5.471 33.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.159 5.159 3 C 0.073 3.927 4 C -0.247 4.247 5 C -0.039 4.039 6 N -0.073 5.073 7 C 0.244 3.756 8 N -0.393 5.393 9 C 0.380 3.620 10 O -0.456 6.456 11 N -0.368 5.368 12 C 0.017 3.983 13 C -0.072 4.072 14 C -0.183 4.183 15 C -0.182 4.182 16 C -0.002 4.002 17 C -0.546 4.546 18 H 0.077 0.923 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.200 1.200 25 N -0.226 5.226 26 H 0.302 0.698 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.224 0.776 31 H 0.231 0.769 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.047 0.953 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -31.438 -1.069 6.200 32.062 hybrid contribution 0.003 -0.772 -1.111 1.353 sum -31.435 -1.841 5.089 31.898 Atomic orbital electron populations 1.22257 0.71909 1.05873 1.04457 1.45657 1.04222 0.97114 1.68949 1.22666 0.88953 0.91492 0.89549 1.16666 0.88825 0.90643 1.28531 1.23822 0.92418 0.93602 0.94107 1.81262 1.06846 1.09783 1.09372 1.19116 0.83476 0.86733 0.86257 1.67535 0.97294 1.34486 1.40016 1.16840 0.84453 0.77670 0.83072 1.90965 1.76374 1.39750 1.38469 1.45711 1.17989 1.54229 1.18915 1.21520 0.80632 0.97600 0.98571 1.20891 0.98642 0.95907 0.91729 1.21746 0.98900 0.95095 1.02575 1.21736 0.96767 1.00205 0.99470 1.19089 0.87956 0.95833 0.97277 1.21196 0.99737 1.30725 1.02982 0.92282 1.25019 0.97458 0.95407 0.96698 1.69971 1.12624 1.35286 1.35547 0.86654 0.78553 0.78805 0.84321 1.20835 1.21386 1.19971 1.43686 0.99900 1.01335 1.77652 0.69778 0.89942 0.89046 0.87648 0.77578 0.76888 0.92023 0.92211 0.95152 0.91578 0.93432 0.93505 0.91572 0.95345 0.96343 0.96348 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 -0.23 11.39 59.85 0.68 0.45 16 2 N -0.37 -0.95 3.97 -67.46 -0.27 -1.22 16 3 C 0.22 0.92 11.36 -16.33 -0.19 0.74 16 4 C -0.23 -2.48 6.08 -104.50 -0.64 -3.11 16 5 C 0.28 4.40 12.52 -22.48 -0.28 4.12 16 6 N -0.40 -7.66 18.15 41.83 0.76 -6.90 16 7 C 0.51 5.98 8.24 -153.37 -1.26 4.72 16 8 N -0.64 -10.23 10.58 -14.27 -0.15 -10.38 16 9 C 0.68 13.38 6.58 -87.64 -0.58 12.80 16 10 O -0.58 -13.49 14.71 5.08 0.07 -13.42 16 11 N -0.71 -13.47 4.96 -65.39 -0.32 -13.80 16 12 C 0.14 3.01 4.56 -4.04 -0.02 3.00 16 13 C -0.07 -1.54 0.54 -154.50 -0.08 -1.62 16 14 C -0.13 -2.51 8.05 37.16 0.30 -2.21 16 15 C -0.12 -2.48 8.05 37.16 0.30 -2.18 16 16 C 0.04 0.96 4.04 -27.88 -0.11 0.85 16 17 C -0.51 -14.31 7.65 -34.44 -0.26 -14.57 16 18 H 0.06 1.60 5.68 -52.48 -0.30 1.30 16 19 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -27.73 13.29 55.43 0.74 -27.00 16 21 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 N -0.49 -2.80 7.27 32.50 0.24 -2.56 16 26 H 0.45 1.39 8.96 -182.79 -1.64 -0.25 16 27 H 0.08 -0.26 8.14 -51.93 -0.42 -0.69 16 28 H 0.09 -0.30 8.14 -51.93 -0.42 -0.73 16 29 H 0.11 -0.47 8.13 -51.93 -0.42 -0.89 16 30 H 0.21 -0.10 8.06 -52.48 -0.42 -0.53 16 31 H 0.40 6.69 6.26 -40.82 -0.26 6.43 16 32 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.03 0.52 6.86 -51.93 -0.36 0.16 16 35 H 0.07 1.37 6.62 -51.93 -0.34 1.03 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.37 6.62 -51.92 -0.34 1.02 16 39 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 355.80 15.07 5.36 5.36 Total: -1.00 -42.58 355.80 -7.79 -50.37 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -6.95 Total: -2.04 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -2.24 Total: 4.49 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: 0.99 Total: -61.86 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.07 Total: -13.42 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -42.58 -7.79 -50.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588259913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.211 kcal (2) G-P(sol) polarization free energy of solvation -42.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds