Wall clock time and date at job start Tue Mar 31 2020 08:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.34766 * 125.00625 * 2 1 4 4 C 1.38070 * 108.94136 * 179.97438 * 3 2 1 5 5 C 1.43202 * 126.66381 * 179.97438 * 4 3 2 6 6 N 4.72780 * 151.21108 * 359.97438 * 2 1 3 7 7 C 1.46974 * 106.66213 * 0.22587 * 4 3 2 8 8 N 1.32626 * 126.87427 * 179.74848 * 7 4 3 9 9 C 1.33969 * 120.00231 * 356.21632 * 8 7 4 10 10 O 1.21823 * 119.99955 * 65.85737 * 9 8 7 11 11 N 1.34775 * 120.00215 * 245.86206 * 9 8 7 12 12 C 1.46499 * 120.00145 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46919 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47429 * 299.99892 * 13 12 11 15 15 C 1.53002 * 109.46875 * 60.00096 * 13 12 11 16 16 C 1.53006 * 109.47138 * 179.97438 * 13 12 11 17 17 C 1.50697 * 109.47259 * 180.02562 * 16 13 12 18 18 H 1.08007 * 119.99643 * 0.02562 * 17 16 13 19 19 C 1.37875 * 119.99932 * 180.02562 * 17 16 13 20 20 N 1.31506 * 120.00208 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99849 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47458 * 89.99716 * 21 19 17 23 23 H 1.48499 * 109.46989 * 209.99939 * 21 19 17 24 24 H 1.48510 * 109.46889 * 329.99522 * 21 19 17 25 25 N 1.37185 * 106.24754 * 359.63345 * 7 4 3 26 26 H 0.97002 * 125.91497 * 180.10879 * 25 7 4 27 27 H 1.08994 * 109.47029 * 90.02338 * 1 2 3 28 28 H 1.08998 * 109.46671 * 210.02638 * 1 2 3 29 29 H 1.08996 * 109.46666 * 330.02316 * 1 2 3 30 30 H 1.08004 * 125.52718 * 359.94304 * 3 2 1 31 31 H 0.97005 * 119.99714 * 359.97438 * 11 9 8 32 32 H 1.09000 * 109.47130 * 299.99171 * 12 11 9 33 33 H 1.09000 * 109.47084 * 59.99909 * 12 11 9 34 34 H 1.09002 * 109.47006 * 60.00223 * 14 13 12 35 35 H 1.08998 * 109.47447 * 180.02562 * 14 13 12 36 36 H 1.09000 * 109.47356 * 300.00136 * 14 13 12 37 37 H 1.09000 * 109.47643 * 60.00109 * 15 13 12 38 38 H 1.09008 * 109.46853 * 180.02562 * 15 13 12 39 39 H 1.09002 * 109.47319 * 299.99629 * 15 13 12 40 40 H 1.08995 * 109.47283 * 300.00641 * 16 13 12 41 41 H 1.09003 * 109.46391 * 60.00025 * 16 13 12 42 42 H 0.96995 * 120.00330 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2382 1.1039 0.0000 4 6 3.5650 0.7218 0.0006 5 6 4.7046 1.5890 0.0003 6 7 5.6086 2.2768 -0.0010 7 6 3.5803 -0.7479 -0.0046 8 7 4.6495 -1.5326 -0.0105 9 6 5.8743 -0.9954 -0.0887 10 8 6.2976 -0.3086 0.8240 11 7 6.6381 -1.2148 -1.1773 12 6 7.9772 -0.6269 -1.2631 13 6 8.6262 -1.0281 -2.5893 14 6 8.7327 -2.5525 -2.6645 15 6 7.7702 -0.5187 -3.7507 16 6 10.0245 -0.4136 -2.6793 17 6 10.6636 -0.8082 -3.9858 18 1 10.1259 -1.4343 -4.6825 19 6 11.9345 -0.3700 -4.2916 20 7 12.5890 0.3928 -3.4435 21 14 12.7264 -0.8586 -5.9115 22 1 12.3968 0.1520 -6.9483 23 1 14.1997 -0.9300 -5.7405 24 1 12.2120 -2.1864 -6.3332 25 7 2.2674 -1.1454 0.0005 26 1 1.9504 -2.0622 0.0004 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3632 -0.8898 0.5142 29 1 -0.3632 0.8902 0.5135 30 1 1.8783 2.1222 -0.0009 31 1 6.3010 -1.7619 -1.9040 32 1 7.9013 0.4591 -1.2093 33 1 8.5871 -0.9901 -0.4360 34 1 7.7363 -2.9899 -2.6006 35 1 9.1955 -2.8383 -3.6091 36 1 9.3425 -2.9154 -1.8371 37 1 7.6943 0.5673 -3.6972 38 1 8.2323 -0.8050 -4.6955 39 1 6.7738 -0.9561 -3.6868 40 1 9.9483 0.6724 -2.6259 41 1 10.6345 -0.7761 -1.8518 42 1 13.4832 0.7008 -3.6585 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588259913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:30 Heat of formation + Delta-G solvation = 64.795360 kcal Electronic energy + Delta-G solvation = -24666.021143 eV Core-core repulsion = 21068.889709 eV Total energy + Delta-G solvation = -3597.131434 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.37970 -40.78576 -38.77217 -37.23377 -35.74846 -35.17142 -33.88990 -32.86449 -32.47518 -29.13400 -28.01688 -27.89040 -27.08140 -25.14044 -24.03167 -23.09000 -21.68752 -20.41642 -19.47983 -18.40895 -18.07219 -17.59821 -17.15042 -16.74730 -16.57649 -16.42105 -16.14350 -15.58019 -15.34176 -14.83890 -14.67847 -14.49664 -14.37017 -13.97791 -13.87815 -13.81410 -13.59965 -13.50840 -13.27068 -12.88195 -12.73837 -12.62916 -12.38705 -12.26851 -12.00776 -11.86851 -11.71556 -11.58191 -11.06961 -10.90816 -10.62815 -10.53316 -10.37978 -9.96261 -8.59311 -8.14398 -6.23815 0.22691 0.33280 0.95290 1.41030 1.43284 1.53823 1.87184 1.87711 2.34397 2.43266 2.58567 2.80112 3.19083 3.60351 3.71448 3.92552 4.01070 4.02308 4.17358 4.18042 4.37655 4.61652 4.65218 4.65367 4.66432 4.78571 4.91378 4.93407 5.05767 5.06651 5.35080 5.42129 5.43136 5.45701 5.49900 5.57860 5.75262 5.80939 5.86851 6.24930 6.27982 6.71910 6.88305 6.90510 6.93550 7.43835 7.68493 8.98797 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.027849 B = 0.002880 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.181476 B = 9718.892756 C = 9891.705099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.337 5.337 3 C 0.285 3.715 4 C -0.307 4.307 5 C 0.301 3.699 6 N -0.489 5.489 7 C 0.510 3.490 8 N -0.684 5.684 9 C 0.685 3.315 10 O -0.630 6.630 11 N -0.708 5.708 12 C 0.161 3.839 13 C -0.063 4.063 14 C -0.117 4.117 15 C -0.115 4.115 16 C 0.042 3.958 17 C -0.513 4.513 18 H 0.076 0.924 19 C -0.009 4.009 20 N -0.941 5.941 21 Si 0.966 3.034 22 H -0.274 1.274 23 H -0.288 1.288 24 H -0.257 1.257 25 N -0.472 5.472 26 H 0.468 0.532 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.142 0.858 30 H 0.267 0.733 31 H 0.407 0.593 32 H 0.029 0.971 33 H 0.033 0.967 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.034 0.966 37 H 0.030 0.970 38 H 0.063 0.937 39 H 0.064 0.936 40 H -0.020 1.020 41 H -0.017 1.017 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.934 -3.041 3.786 39.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.118 5.118 3 C 0.133 3.867 4 C -0.329 4.329 5 C -0.012 4.012 6 N -0.168 5.168 7 C 0.244 3.756 8 N -0.439 5.439 9 C 0.385 3.615 10 O -0.510 6.510 11 N -0.362 5.362 12 C 0.035 3.965 13 C -0.063 4.063 14 C -0.175 4.175 15 C -0.172 4.172 16 C 0.004 3.996 17 C -0.551 4.551 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.582 5.582 21 Si 0.791 3.209 22 H -0.200 1.200 23 H -0.214 1.214 24 H -0.181 1.181 25 N -0.203 5.203 26 H 0.320 0.680 27 H 0.123 0.877 28 H 0.127 0.873 29 H 0.160 0.840 30 H 0.282 0.718 31 H 0.244 0.756 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.083 0.917 40 H -0.002 1.002 41 H 0.001 0.999 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -37.327 -2.497 4.495 37.679 hybrid contribution 1.280 -0.328 -0.483 1.407 sum -36.046 -2.824 4.012 36.379 Atomic orbital electron populations 1.22992 0.67549 1.08580 1.06796 1.46585 1.05932 0.95624 1.63625 1.23507 0.86227 0.93762 0.83162 1.16729 0.90106 0.89797 1.36220 1.24618 0.92332 0.92576 0.91626 1.81250 1.09059 1.12829 1.13651 1.19248 0.84406 0.87233 0.84678 1.67326 0.96624 1.33957 1.46010 1.17195 0.85862 0.76369 0.82122 1.90914 1.77605 1.42297 1.40224 1.45480 1.16748 1.54425 1.19592 1.21012 0.82152 0.95719 0.97603 1.20708 0.95860 0.97155 0.92596 1.21655 1.00774 0.93218 1.01824 1.21631 0.98191 0.99387 0.98021 1.18954 0.90899 0.93642 0.96096 1.21559 0.99979 1.30371 1.03226 0.90608 1.26054 0.98313 0.95315 1.00854 1.70153 1.13089 1.36890 1.38109 0.85429 0.77130 0.79233 0.79145 1.19953 1.21414 1.18056 1.43801 0.98535 1.03200 1.74788 0.67965 0.87706 0.87314 0.84010 0.71768 0.75576 0.95211 0.94817 0.91621 0.91871 0.94638 0.95076 0.91802 0.91704 1.00175 0.99883 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.97 11.39 127.76 1.46 0.48 16 2 N -0.34 0.37 3.97 -367.33 -1.46 -1.09 16 3 C 0.29 0.89 11.36 84.20 0.96 1.85 16 4 C -0.31 -6.31 6.08 -19.78 -0.12 -6.43 16 5 C 0.30 10.13 12.52 88.33 1.11 11.23 16 6 N -0.49 -20.70 18.15 19.00 0.34 -20.35 16 7 C 0.51 11.18 8.24 135.68 1.12 12.30 16 8 N -0.68 -22.02 10.58 -317.68 -3.36 -25.39 16 9 C 0.68 28.41 6.58 179.31 1.18 29.59 16 10 O -0.63 -31.77 14.71 -4.74 -0.07 -31.83 16 11 N -0.71 -27.94 4.96 -478.97 -2.38 -30.31 16 12 C 0.16 7.48 4.56 86.38 0.39 7.88 16 13 C -0.06 -2.83 0.54 -52.18 -0.03 -2.86 16 14 C -0.12 -4.70 8.05 71.98 0.58 -4.12 16 15 C -0.12 -4.61 8.05 71.98 0.58 -4.03 16 16 C 0.04 2.40 4.04 29.85 0.12 2.52 16 17 C -0.51 -29.70 7.65 25.60 0.20 -29.51 16 18 H 0.08 4.06 5.68 -2.91 -0.02 4.05 16 19 C -0.01 -0.53 5.46 84.66 0.46 -0.07 16 20 N -0.94 -60.97 13.29 21.45 0.28 -60.68 16 21 Si 0.97 45.89 29.54 68.60 2.03 47.92 16 22 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 25 N -0.47 -3.44 7.27 -51.08 -0.37 -3.81 16 26 H 0.47 0.88 8.96 -213.48 -1.91 -1.04 16 27 H 0.10 -1.51 8.14 -2.39 -0.02 -1.53 16 28 H 0.11 -1.52 8.14 -2.39 -0.02 -1.54 16 29 H 0.14 -2.51 8.13 -2.39 -0.02 -2.53 16 30 H 0.27 -2.28 8.06 -2.91 -0.02 -2.30 16 31 H 0.41 13.70 6.26 -92.70 -0.58 13.12 16 32 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 2.15 6.86 -2.39 -0.02 2.14 16 35 H 0.06 2.56 6.62 -2.39 -0.02 2.55 16 36 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.06 2.58 6.62 -2.38 -0.02 2.57 16 39 H 0.06 2.11 6.86 -2.39 -0.02 2.10 16 40 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 41 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 42 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -107.51 355.80 1.59 -105.92 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -1.42 Total: 0.79 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 8.00 Total: 18.84 kcal Atomic # 7 Polarization: -134.69 SS G_CDS: -6.94 Total: -141.63 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.07 Total: -31.83 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -107.51 1.59 -105.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588259913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.714 kcal (2) G-P(sol) polarization free energy of solvation -107.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds