Wall clock time and date at job start Tue Mar 31 2020 09:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47181 * 2 1 4 4 C 1.53000 * 109.46947 * 240.00623 * 2 1 3 5 5 C 1.50692 * 109.47544 * 64.99705 * 4 2 1 6 6 H 1.07999 * 120.00311 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99962 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00143 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00097 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47081 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47113 * 120.00100 * 9 7 5 12 12 H 1.48499 * 109.47471 * 240.00722 * 9 7 5 13 13 C 1.53002 * 109.47249 * 120.00291 * 2 1 3 14 14 N 1.46897 * 109.46695 * 294.63438 * 13 2 1 15 15 C 1.46969 * 111.00078 * 290.54020 * 14 13 2 16 16 C 1.51256 * 111.68099 * 330.13855 * 15 14 13 17 17 C 1.51747 * 115.88617 * 289.12563 * 16 15 14 18 18 H 1.08998 * 109.46362 * 308.39078 * 17 16 15 19 19 C 1.53003 * 109.45585 * 188.43139 * 17 16 15 20 20 S 1.82221 * 109.53541 * 68.41350 * 17 16 15 21 21 C 1.77592 * 101.01594 * 281.28786 * 20 17 16 22 22 C 1.38329 * 120.26961 * 246.12027 * 21 20 17 23 23 C 1.38559 * 119.15946 * 180.45596 * 22 21 20 24 24 C 1.38275 * 119.96550 * 0.16884 * 23 22 21 25 25 C 1.38272 * 120.67215 * 359.73196 * 24 23 22 26 26 C 1.38151 * 118.40496 * 66.59193 * 21 20 17 27 27 H 1.09008 * 109.46999 * 304.81849 * 1 2 3 28 28 H 1.09000 * 109.47252 * 64.81175 * 1 2 3 29 29 H 1.08995 * 109.47204 * 184.81569 * 1 2 3 30 30 H 1.09005 * 109.47227 * 185.00596 * 4 2 1 31 31 H 1.09007 * 109.47199 * 304.99408 * 4 2 1 32 32 H 0.97000 * 119.99907 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.46704 * 174.63409 * 13 2 1 34 34 H 1.08994 * 109.46522 * 54.63286 * 13 2 1 35 35 H 1.09000 * 109.03845 * 209.56613 * 15 14 13 36 36 H 1.09005 * 108.97687 * 90.66481 * 15 14 13 37 37 H 1.09000 * 108.19905 * 167.45962 * 16 15 14 38 38 H 1.08998 * 108.04544 * 50.67586 * 16 15 14 39 39 H 1.09005 * 109.47319 * 299.92736 * 19 17 16 40 40 H 1.08989 * 109.47359 * 59.93719 * 19 17 16 41 41 H 1.09003 * 109.46699 * 179.97438 * 19 17 16 42 42 H 1.07996 * 120.41867 * 0.47424 * 22 21 20 43 43 H 1.07997 * 120.01793 * 180.14590 * 23 22 21 44 44 H 1.08000 * 119.66335 * 179.75613 * 24 23 22 45 45 H 1.08003 * 120.17225 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9932 -0.4015 -3.7283 8 7 2.6764 -1.5186 -3.8512 9 14 1.4984 0.5628 -5.2497 10 1 0.7410 1.7739 -4.8435 11 1 2.7162 0.9685 -5.9964 12 1 0.6449 -0.2868 -6.1186 13 6 2.0400 -0.7213 1.2492 14 7 1.6589 0.0419 2.4451 15 6 2.4090 1.3032 2.5262 16 6 3.7740 1.1837 1.8855 17 6 4.7852 0.3351 2.6340 18 1 4.8403 0.6660 3.6711 19 6 6.1596 0.4831 1.9782 20 16 4.2722 -1.4126 2.5808 21 6 3.0136 -1.4351 3.8336 22 6 3.2009 -2.1594 4.9972 23 6 2.1999 -2.1686 5.9552 24 6 1.0310 -1.4622 5.7395 25 6 0.8490 -0.7381 4.5757 26 6 1.8507 -0.7238 3.6097 27 1 -0.3633 0.5868 0.8437 28 1 -0.3634 0.4374 -0.9299 29 1 -0.3633 -1.0240 0.0863 30 1 3.1263 -0.7995 -1.2057 31 1 1.6054 -1.7198 -1.2953 32 1 2.9243 -1.8411 -4.7318 33 1 3.1257 -0.8052 1.2024 34 1 1.6003 -1.7174 1.2984 35 1 2.5307 1.5777 3.5740 36 1 1.8446 2.0846 2.0173 37 1 4.1869 2.1863 1.7744 38 1 3.6438 0.7593 0.8900 39 1 6.1051 0.1516 0.9413 40 1 6.4666 1.5284 2.0099 41 1 6.8862 -0.1261 2.5160 42 1 4.1159 -2.7104 5.1570 43 1 2.3325 -2.7274 6.8698 44 1 0.2523 -1.4760 6.4877 45 1 -0.0675 -0.1896 4.4153 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589820877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:44 Heat of formation + Delta-G solvation = 20.503836 kcal Electronic energy + Delta-G solvation = -23779.702513 eV Core-core repulsion = 20694.650917 eV Total energy + Delta-G solvation = -3085.051596 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32468 -38.92429 -36.47819 -35.20790 -33.99439 -31.96206 -31.19188 -29.58157 -28.52343 -27.41430 -25.27908 -24.28452 -23.66539 -22.79223 -21.40631 -20.30439 -18.60079 -18.48273 -18.14370 -17.03088 -16.47586 -16.37463 -15.97048 -15.65651 -15.34497 -15.10145 -14.78413 -14.60448 -14.48351 -14.18527 -13.72175 -13.40605 -13.30838 -13.12933 -13.00330 -12.87436 -12.74093 -12.55102 -12.46784 -12.35343 -12.19601 -12.03821 -11.96310 -11.78291 -11.40965 -11.17634 -11.01449 -10.88396 -10.51874 -10.01447 -9.87192 -9.34189 -8.15371 -8.09456 -6.23900 0.00612 0.35049 0.70539 1.40044 1.40648 1.48524 1.53664 2.43088 2.71659 2.89782 3.18530 3.49199 3.80742 3.94625 4.06195 4.15712 4.18188 4.23477 4.40544 4.41252 4.43491 4.54600 4.54990 4.64605 4.69236 4.75805 4.79045 4.88278 4.95602 5.00029 5.04148 5.14040 5.15295 5.25211 5.31820 5.33962 5.42462 5.47908 5.49537 5.52941 5.60929 5.81368 5.87605 5.93117 6.03532 6.31959 6.42732 6.92460 7.44198 8.97729 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018784 B = 0.004356 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.290181 B = 6425.654510 C = 7031.711510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.065 4.065 3 H 0.058 0.942 4 C 0.040 3.960 5 C -0.524 4.524 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.959 3.041 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.034 3.966 14 N -0.490 5.490 15 C 0.062 3.938 16 C -0.165 4.165 17 C -0.043 4.043 18 H 0.100 0.900 19 C -0.131 4.131 20 S -0.206 6.206 21 C -0.146 4.146 22 C -0.079 4.079 23 C -0.125 4.125 24 C -0.091 4.091 25 C -0.113 4.113 26 C 0.103 3.897 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.027 0.973 30 H -0.015 1.015 31 H -0.021 1.021 32 H 0.261 0.739 33 H 0.099 0.901 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.046 0.954 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.140 0.860 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.952 4.500 22.557 23.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 H 0.077 0.923 4 C 0.003 3.997 5 C -0.562 4.562 6 H 0.080 0.920 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.784 3.216 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.207 1.207 13 C -0.094 4.094 14 N -0.210 5.210 15 C -0.064 4.064 16 C -0.205 4.205 17 C -0.171 4.171 18 H 0.118 0.882 19 C -0.190 4.190 20 S 0.032 5.968 21 C -0.260 4.260 22 C -0.100 4.100 23 C -0.145 4.145 24 C -0.110 4.110 25 C -0.134 4.134 26 C 0.006 3.994 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.003 0.997 31 H -0.002 1.002 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.115 0.885 41 H 0.093 0.907 42 H 0.158 0.842 43 H 0.177 0.823 44 H 0.177 0.823 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.002 3.683 21.664 22.066 hybrid contribution 0.181 0.489 -0.682 0.859 sum 2.183 4.171 20.982 21.504 Atomic orbital electron populations 1.21515 0.95480 0.99858 1.00326 1.21002 0.96007 0.98470 0.92942 0.92325 1.18913 0.93931 0.94179 0.92710 1.21643 1.34162 1.08444 0.91938 0.92038 1.25943 0.95293 0.96053 1.02580 1.70132 1.40441 1.23031 1.24078 0.85480 0.78078 0.78940 0.79058 1.18419 1.20480 1.20719 1.23276 1.03578 0.94500 0.88075 1.60673 1.55331 1.04958 1.00021 1.21887 0.91649 0.91444 1.01401 1.21942 0.95492 1.01772 1.01264 1.23164 0.99084 0.91176 1.03687 0.88193 1.21668 0.92886 1.04111 1.00291 1.86361 1.45626 1.17429 1.47407 1.22249 0.97094 1.07629 0.98985 1.21498 1.00311 0.96982 0.91231 1.21617 0.93114 0.99955 0.99826 1.21603 0.98077 0.94563 0.96778 1.21442 0.98349 1.00425 0.93156 1.19430 0.92233 0.95717 0.92061 0.91772 0.94216 0.95352 0.99659 1.00243 0.93057 0.88391 0.94706 0.90512 0.89171 0.88385 0.91493 0.93436 0.88541 0.90661 0.84238 0.82340 0.82345 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.68 8.91 71.98 0.64 -4.04 16 2 C -0.07 -2.82 1.77 -10.79 -0.02 -2.84 16 3 H 0.06 2.48 6.38 -2.38 -0.02 2.46 16 4 C 0.04 2.22 4.45 29.85 0.13 2.35 16 5 C -0.52 -30.29 8.34 25.60 0.21 -30.07 16 6 H 0.06 3.42 7.08 -2.91 -0.02 3.39 16 7 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 8 N -0.94 -58.66 13.29 21.45 0.28 -58.37 16 9 Si 0.96 45.26 29.54 68.60 2.03 47.28 16 10 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 13 C 0.03 1.33 2.75 86.30 0.24 1.57 16 14 N -0.49 -15.24 4.28 -697.84 -2.99 -18.23 16 15 C 0.06 1.64 5.17 85.72 0.44 2.08 16 16 C -0.16 -4.40 4.18 29.61 0.12 -4.27 16 17 C -0.04 -1.08 2.90 30.18 0.09 -0.99 16 18 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 19 C -0.13 -2.89 9.15 71.98 0.66 -2.23 16 20 S -0.21 -6.43 17.50 -56.49 -0.99 -7.42 16 21 C -0.15 -4.11 5.50 22.27 0.12 -3.99 16 22 C -0.08 -1.77 9.85 22.37 0.22 -1.55 16 23 C -0.13 -2.13 10.06 22.36 0.22 -1.91 16 24 C -0.09 -1.57 10.01 22.29 0.22 -1.34 16 25 C -0.11 -2.59 9.97 22.50 0.22 -2.36 16 26 C 0.10 2.93 4.36 37.92 0.17 3.09 16 27 H 0.06 2.27 7.90 -2.38 -0.02 2.25 16 28 H 0.04 1.71 6.83 -2.39 -0.02 1.69 16 29 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 30 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 31 H -0.02 -1.28 8.14 -2.38 -0.02 -1.30 16 32 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 33 H 0.10 3.86 2.50 -22.24 -0.06 3.81 16 34 H 0.03 1.50 8.02 -2.39 -0.02 1.48 16 35 H 0.08 1.76 7.69 -2.39 -0.02 1.74 16 36 H 0.09 2.33 7.94 -2.38 -0.02 2.31 16 37 H 0.10 2.14 8.07 -2.39 -0.02 2.12 16 38 H 0.07 2.31 4.67 -2.39 -0.01 2.30 16 39 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 43 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 44 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 45 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -69.20 353.36 3.41 -65.79 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.91 Total: 17.08 kcal Atomic # 6 Polarization: -50.30 SS G_CDS: 4.16 Total: -46.13 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -2.70 Total: -76.60 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: -6.43 SS G_CDS: -0.99 Total: -7.42 kcal Total: -69.20 3.41 -65.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589820877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.293 kcal (2) G-P(sol) polarization free energy of solvation -69.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds