Wall clock time and date at job start Tue Mar 31 2020 09:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47121 * 2 1 4 4 C 1.52994 * 109.47038 * 119.99724 * 2 1 3 5 5 C 1.50702 * 109.47612 * 295.00019 * 4 2 1 6 6 H 1.08005 * 119.99513 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00618 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99554 * 359.97438 * 7 5 4 9 9 Si 1.86790 * 120.00377 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47676 * 59.99651 * 9 7 5 11 11 H 1.48497 * 109.47464 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47210 * 300.00045 * 9 7 5 13 13 C 1.52993 * 109.46965 * 240.00024 * 2 1 3 14 14 N 1.46894 * 109.47354 * 64.99960 * 13 2 1 15 15 C 1.46985 * 111.00191 * 171.74112 * 14 13 2 16 16 C 1.51274 * 111.64338 * 330.06138 * 15 14 13 17 17 C 1.51730 * 115.87935 * 289.27731 * 16 15 14 18 18 H 1.09006 * 109.45416 * 188.49061 * 17 16 15 19 19 C 1.53004 * 109.45560 * 308.42567 * 17 16 15 20 20 S 1.82205 * 109.57282 * 68.45830 * 17 16 15 21 21 C 1.77605 * 101.02426 * 281.17749 * 20 17 16 22 22 C 1.38292 * 120.31321 * 245.90838 * 21 20 17 23 23 C 1.38576 * 119.14874 * 180.58348 * 22 21 20 24 24 C 1.38263 * 119.94788 * 359.90373 * 23 22 21 25 25 C 1.38278 * 120.69205 * 359.83275 * 24 23 22 26 26 C 1.38182 * 118.30961 * 66.14006 * 21 20 17 27 27 H 1.09000 * 109.47137 * 299.99739 * 1 2 3 28 28 H 1.08995 * 109.47205 * 59.99945 * 1 2 3 29 29 H 1.09001 * 109.47121 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47528 * 55.00030 * 4 2 1 31 31 H 1.09003 * 109.47176 * 175.00084 * 4 2 1 32 32 H 0.96998 * 119.99865 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47453 * 304.99666 * 13 2 1 34 34 H 1.09002 * 109.46964 * 185.00408 * 13 2 1 35 35 H 1.08992 * 109.04368 * 90.61905 * 15 14 13 36 36 H 1.09002 * 109.04459 * 209.50656 * 15 14 13 37 37 H 1.09003 * 108.20168 * 50.94455 * 16 15 14 38 38 H 1.09002 * 108.19789 * 167.61081 * 16 15 14 39 39 H 1.08998 * 109.46636 * 59.99927 * 19 17 16 40 40 H 1.08997 * 109.46990 * 179.97438 * 19 17 16 41 41 H 1.08999 * 109.47037 * 299.99836 * 19 17 16 42 42 H 1.08001 * 120.42987 * 0.60969 * 22 21 20 43 43 H 1.07994 * 120.02316 * 179.97438 * 23 22 21 44 44 H 1.08004 * 119.65467 * 179.82842 * 24 23 22 45 45 H 1.07995 * 120.15843 * 180.45684 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0571 2.4766 6 1 1.0800 0.9743 2.3757 7 6 1.9924 -0.4021 3.7284 8 7 2.6747 -1.5197 3.8513 9 14 1.4976 0.5622 5.2497 10 1 0.0176 0.6689 5.3087 11 1 1.9927 -0.1377 6.4622 12 1 2.0897 1.9227 5.1877 13 6 2.0400 -0.7212 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.2876 -0.5156 -3.6497 16 6 3.6251 -1.1477 -3.3338 17 6 4.7424 -0.1872 -2.9714 18 1 5.6848 -0.7320 -2.9128 19 6 4.8482 0.8993 -4.0435 20 16 4.3859 0.5837 -1.3594 21 6 3.1986 1.8184 -1.8286 22 6 3.5054 3.1618 -1.7116 23 6 2.5566 4.1048 -2.0732 24 6 1.3229 3.6967 -2.5456 25 6 1.0228 2.3523 -2.6660 26 6 1.9707 1.3997 -2.3043 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6054 -1.7198 1.2953 31 1 3.1264 -0.7994 1.2056 32 1 2.9219 -1.8426 4.7319 33 1 1.6054 -1.7198 -1.2951 34 1 3.1263 -0.7995 -1.2055 35 1 1.6315 -1.2698 -4.0841 36 1 2.4349 0.2856 -4.3739 37 1 3.4872 -1.8388 -2.5023 38 1 3.9416 -1.7264 -4.2016 39 1 3.9059 1.4437 -4.1032 40 1 5.6505 1.5896 -3.7832 41 1 5.0634 0.4386 -5.0076 42 1 4.4722 3.4721 -1.3435 43 1 2.7810 5.1577 -1.9872 44 1 0.5860 4.4357 -2.8235 45 1 0.0591 2.0431 -3.0429 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589820880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:48 Heat of formation + Delta-G solvation = 44.289016 kcal Electronic energy + Delta-G solvation = -24393.427650 eV Core-core repulsion = 21309.407458 eV Total energy + Delta-G solvation = -3084.020193 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38669 -37.49430 -35.33283 -33.57505 -31.83361 -30.88772 -30.26606 -27.76633 -26.69712 -26.19073 -24.15708 -22.86890 -22.56320 -21.49474 -19.76170 -18.98010 -17.63918 -16.43883 -15.97908 -15.78238 -15.23119 -15.11930 -14.85175 -14.36566 -14.29420 -13.93307 -13.58737 -13.22157 -12.78590 -12.54262 -12.43535 -12.25096 -12.13243 -11.99410 -11.53706 -11.43261 -11.36119 -11.20701 -10.85982 -10.76544 -10.73890 -10.55988 -10.20316 -10.07283 -9.87236 -9.56341 -9.02431 -8.90196 -8.78003 -8.69357 -8.22932 -8.09765 -6.74423 -5.86701 -3.86300 1.11988 1.45947 1.91601 2.63139 3.40359 3.44129 3.47213 3.80958 4.10146 4.53187 4.56951 4.70192 4.99101 5.03137 5.08082 5.27628 5.31564 5.35440 5.39794 5.49039 5.52469 5.60885 5.71143 5.74488 5.82514 5.86658 5.98570 6.04028 6.13862 6.17065 6.32414 6.39523 6.46378 6.53363 6.58860 6.77212 6.81633 6.89241 7.13228 7.29327 7.32724 7.44055 7.64173 7.85647 8.05053 8.16159 8.60769 9.19754 9.75724 11.24873 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015821 B = 0.005388 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.368434 B = 5195.906307 C = 5639.533935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.076 4.076 3 H 0.054 0.946 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.052 0.948 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.279 1.279 13 C 0.011 3.989 14 N -0.490 5.490 15 C 0.055 3.945 16 C -0.156 4.156 17 C -0.076 4.076 18 H 0.112 0.888 19 C -0.149 4.149 20 S -0.120 6.120 21 C -0.125 4.125 22 C -0.068 4.068 23 C -0.136 4.136 24 C -0.100 4.100 25 C -0.109 4.109 26 C 0.142 3.858 27 H 0.051 0.949 28 H 0.036 0.964 29 H 0.039 0.961 30 H 0.011 0.989 31 H 0.018 0.982 32 H 0.258 0.742 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.129 0.871 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.407 6.289 -19.105 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.095 4.095 3 H 0.073 0.927 4 C -0.003 4.003 5 C -0.546 4.546 6 H 0.070 0.930 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.117 4.117 14 N -0.210 5.210 15 C -0.071 4.071 16 C -0.197 4.197 17 C -0.204 4.204 18 H 0.130 0.870 19 C -0.208 4.208 20 S 0.119 5.881 21 C -0.238 4.238 22 C -0.090 4.090 23 C -0.156 4.156 24 C -0.119 4.119 25 C -0.130 4.130 26 C 0.045 3.955 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.147 0.853 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.494 5.769 -17.976 19.044 hybrid contribution -0.039 0.833 0.079 0.837 sum 2.455 6.602 -17.898 19.234 Atomic orbital electron populations 1.21637 0.96579 1.00287 0.99736 1.21177 0.94945 0.99141 0.94232 0.92735 1.19034 0.96241 0.95034 0.90017 1.21207 1.34168 1.08045 0.91131 0.93025 1.24979 0.95507 0.95087 0.98850 1.69959 1.39346 1.21208 1.23213 0.86761 0.78850 0.80195 0.82809 1.20373 1.21405 1.20432 1.23629 1.04060 0.96306 0.87718 1.60854 1.56351 0.99110 1.04722 1.21886 0.92976 0.99653 0.92582 1.21814 0.94852 0.99469 1.03517 1.23227 1.01970 0.99199 0.96032 0.87031 1.22107 1.02968 0.97890 0.97786 1.86563 1.51770 1.38636 1.11167 1.22064 0.97012 0.96875 1.07871 1.21245 0.99540 0.91224 0.96971 1.21174 0.94013 0.99228 1.01152 1.21160 0.96624 0.95701 0.98392 1.21176 0.98933 0.91720 1.01183 1.19000 0.90442 0.90973 0.95126 0.93028 0.94517 0.94224 0.97018 0.96335 0.93214 0.91712 0.88358 0.89852 0.91562 0.89480 0.91052 0.91826 0.91713 0.91813 0.85273 0.85853 0.85951 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 8.88 37.16 0.33 -2.28 16 2 C -0.08 -1.66 1.58 -90.62 -0.14 -1.80 16 3 H 0.05 1.27 5.73 -51.93 -0.30 0.97 16 4 C 0.03 0.92 4.45 -27.88 -0.12 0.79 16 5 C -0.51 -14.78 8.41 -34.44 -0.29 -15.07 16 6 H 0.05 1.49 7.06 -52.48 -0.37 1.12 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.90 -27.67 13.29 55.43 0.74 -26.94 16 9 Si 0.89 22.46 29.54 -169.99 -5.02 17.44 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.01 0.19 2.80 -3.83 -0.01 0.18 16 14 N -0.49 -7.55 4.35 -171.91 -0.75 -8.29 16 15 C 0.06 0.68 5.68 -4.65 -0.03 0.65 16 16 C -0.16 -1.82 4.58 -28.25 -0.13 -1.95 16 17 C -0.08 -0.92 3.39 -27.37 -0.09 -1.01 16 18 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 19 C -0.15 -1.55 8.23 37.16 0.31 -1.24 16 20 S -0.12 -1.95 17.42 -107.50 -1.87 -3.82 16 21 C -0.12 -1.94 2.56 -39.58 -0.10 -2.04 16 22 C -0.07 -0.96 9.85 -39.44 -0.39 -1.35 16 23 C -0.14 -1.65 10.06 -39.45 -0.40 -2.05 16 24 C -0.10 -1.20 10.01 -39.56 -0.40 -1.59 16 25 C -0.11 -1.50 9.97 -39.22 -0.39 -1.89 16 26 C 0.14 2.18 2.47 -83.49 -0.21 1.97 16 27 H 0.05 1.15 6.95 -51.93 -0.36 0.79 16 28 H 0.04 0.69 7.63 -51.93 -0.40 0.29 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.10 1.80 2.49 -20.21 -0.05 1.75 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.76 5.91 -51.93 -0.31 0.46 16 37 H 0.09 1.17 5.93 -51.93 -0.31 0.86 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.74 4.84 -51.93 -0.25 0.48 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 45 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 344.65 15.07 5.19 5.19 Total: -1.00 -31.68 344.65 -10.84 -42.52 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.97 Total: 1.01 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: -2.16 Total: -27.11 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.01 Total: -35.23 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -1.87 Total: -3.82 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.68 -10.84 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589820880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.808 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds