Wall clock time and date at job start Tue Mar 31 2020 09:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47121 * 2 1 4 4 C 1.52994 * 109.47038 * 119.99724 * 2 1 3 5 5 C 1.50702 * 109.47612 * 295.00019 * 4 2 1 6 6 H 1.08005 * 119.99513 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00618 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99554 * 359.97438 * 7 5 4 9 9 Si 1.86790 * 120.00377 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47676 * 59.99651 * 9 7 5 11 11 H 1.48497 * 109.47464 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47210 * 300.00045 * 9 7 5 13 13 C 1.52993 * 109.46965 * 240.00024 * 2 1 3 14 14 N 1.46894 * 109.47354 * 64.99960 * 13 2 1 15 15 C 1.46985 * 111.00191 * 171.74112 * 14 13 2 16 16 C 1.51274 * 111.64338 * 330.06138 * 15 14 13 17 17 C 1.51730 * 115.87935 * 289.27731 * 16 15 14 18 18 H 1.09006 * 109.45416 * 188.49061 * 17 16 15 19 19 C 1.53004 * 109.45560 * 308.42567 * 17 16 15 20 20 S 1.82205 * 109.57282 * 68.45830 * 17 16 15 21 21 C 1.77605 * 101.02426 * 281.17749 * 20 17 16 22 22 C 1.38292 * 120.31321 * 245.90838 * 21 20 17 23 23 C 1.38576 * 119.14874 * 180.58348 * 22 21 20 24 24 C 1.38263 * 119.94788 * 359.90373 * 23 22 21 25 25 C 1.38278 * 120.69205 * 359.83275 * 24 23 22 26 26 C 1.38182 * 118.30961 * 66.14006 * 21 20 17 27 27 H 1.09000 * 109.47137 * 299.99739 * 1 2 3 28 28 H 1.08995 * 109.47205 * 59.99945 * 1 2 3 29 29 H 1.09001 * 109.47121 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47528 * 55.00030 * 4 2 1 31 31 H 1.09003 * 109.47176 * 175.00084 * 4 2 1 32 32 H 0.96998 * 119.99865 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47453 * 304.99666 * 13 2 1 34 34 H 1.09002 * 109.46964 * 185.00408 * 13 2 1 35 35 H 1.08992 * 109.04368 * 90.61905 * 15 14 13 36 36 H 1.09002 * 109.04459 * 209.50656 * 15 14 13 37 37 H 1.09003 * 108.20168 * 50.94455 * 16 15 14 38 38 H 1.09002 * 108.19789 * 167.61081 * 16 15 14 39 39 H 1.08998 * 109.46636 * 59.99927 * 19 17 16 40 40 H 1.08997 * 109.46990 * 179.97438 * 19 17 16 41 41 H 1.08999 * 109.47037 * 299.99836 * 19 17 16 42 42 H 1.08001 * 120.42987 * 0.60969 * 22 21 20 43 43 H 1.07994 * 120.02316 * 179.97438 * 23 22 21 44 44 H 1.08004 * 119.65467 * 179.82842 * 24 23 22 45 45 H 1.07995 * 120.15843 * 180.45684 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0571 2.4766 6 1 1.0800 0.9743 2.3757 7 6 1.9924 -0.4021 3.7284 8 7 2.6747 -1.5197 3.8513 9 14 1.4976 0.5622 5.2497 10 1 0.0176 0.6689 5.3087 11 1 1.9927 -0.1377 6.4622 12 1 2.0897 1.9227 5.1877 13 6 2.0400 -0.7212 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.2876 -0.5156 -3.6497 16 6 3.6251 -1.1477 -3.3338 17 6 4.7424 -0.1872 -2.9714 18 1 5.6848 -0.7320 -2.9128 19 6 4.8482 0.8993 -4.0435 20 16 4.3859 0.5837 -1.3594 21 6 3.1986 1.8184 -1.8286 22 6 3.5054 3.1618 -1.7116 23 6 2.5566 4.1048 -2.0732 24 6 1.3229 3.6967 -2.5456 25 6 1.0228 2.3523 -2.6660 26 6 1.9707 1.3997 -2.3043 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6054 -1.7198 1.2953 31 1 3.1264 -0.7994 1.2056 32 1 2.9219 -1.8426 4.7319 33 1 1.6054 -1.7198 -1.2951 34 1 3.1263 -0.7995 -1.2055 35 1 1.6315 -1.2698 -4.0841 36 1 2.4349 0.2856 -4.3739 37 1 3.4872 -1.8388 -2.5023 38 1 3.9416 -1.7264 -4.2016 39 1 3.9059 1.4437 -4.1032 40 1 5.6505 1.5896 -3.7832 41 1 5.0634 0.4386 -5.0076 42 1 4.4722 3.4721 -1.3435 43 1 2.7810 5.1577 -1.9872 44 1 0.5860 4.4357 -2.8235 45 1 0.0591 2.0431 -3.0429 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589820880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:47 Heat of formation + Delta-G solvation = 27.147770 kcal Electronic energy + Delta-G solvation = -24394.170951 eV Core-core repulsion = 21309.407458 eV Total energy + Delta-G solvation = -3084.763493 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.51672 -38.56181 -36.88748 -35.07444 -33.78675 -31.91055 -31.26709 -29.28207 -28.32508 -27.55872 -25.52775 -24.52235 -23.64360 -22.64128 -21.02064 -20.48943 -18.74419 -18.49170 -17.21676 -16.98064 -16.69527 -16.23011 -16.15092 -15.87307 -15.61566 -15.12324 -14.64738 -14.35472 -14.30801 -14.02752 -13.91764 -13.51360 -13.34041 -13.24273 -13.08981 -12.89531 -12.76759 -12.48924 -12.39536 -12.37002 -12.22131 -11.98616 -11.80648 -11.52067 -11.43789 -11.10569 -10.91457 -10.85083 -10.50780 -9.94549 -9.80092 -9.22796 -8.15222 -8.02785 -6.23477 0.10396 0.42171 0.81027 1.36483 1.39731 1.47319 1.58086 2.41586 2.79043 2.95606 3.17408 3.60234 3.78756 3.98618 4.07476 4.19126 4.22041 4.34948 4.37377 4.43470 4.51146 4.53956 4.63400 4.64515 4.67553 4.80211 4.86433 4.94385 4.94693 5.01080 5.02982 5.07605 5.20102 5.27525 5.33335 5.37066 5.45634 5.47192 5.54869 5.55112 5.60395 5.87334 5.93125 5.94325 6.06925 6.35944 6.44962 6.91580 7.43359 8.96611 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015821 B = 0.005388 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.368434 B = 5195.906307 C = 5639.533935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.061 4.061 3 H 0.041 0.959 4 C 0.046 3.954 5 C -0.526 4.526 6 H 0.050 0.950 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.956 3.044 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.271 1.271 13 C 0.022 3.978 14 N -0.491 5.491 15 C 0.054 3.946 16 C -0.154 4.154 17 C -0.057 4.057 18 H 0.122 0.878 19 C -0.141 4.141 20 S -0.207 6.207 21 C -0.127 4.127 22 C -0.087 4.087 23 C -0.130 4.130 24 C -0.095 4.095 25 C -0.117 4.117 26 C 0.120 3.880 27 H 0.031 0.969 28 H 0.061 0.939 29 H 0.036 0.964 30 H -0.017 1.017 31 H -0.011 1.011 32 H 0.261 0.739 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.131 0.869 43 H 0.153 0.847 44 H 0.156 0.844 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.549 8.004 -20.871 22.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.079 4.079 3 H 0.059 0.941 4 C 0.008 3.992 5 C -0.564 4.564 6 H 0.069 0.931 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.780 3.220 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.196 1.196 13 C -0.107 4.107 14 N -0.210 5.210 15 C -0.072 4.072 16 C -0.194 4.194 17 C -0.185 4.185 18 H 0.140 0.860 19 C -0.199 4.199 20 S 0.031 5.969 21 C -0.240 4.240 22 C -0.108 4.108 23 C -0.150 4.150 24 C -0.114 4.114 25 C -0.138 4.138 26 C 0.023 3.977 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.001 0.999 31 H 0.008 0.992 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.123 0.877 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.109 0.891 42 H 0.149 0.851 43 H 0.171 0.829 44 H 0.174 0.826 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.632 7.493 -19.764 21.199 hybrid contribution 0.273 0.312 0.568 0.703 sum 1.906 7.805 -19.196 20.810 Atomic orbital electron populations 1.21537 0.95736 1.00132 0.99895 1.20892 0.95383 0.97933 0.93738 0.94055 1.18851 0.94220 0.93909 0.92222 1.21550 1.34222 1.08214 0.92384 0.93135 1.25884 0.95341 0.96097 1.02340 1.70097 1.40310 1.22805 1.24150 0.85648 0.78959 0.78790 0.78567 1.19223 1.20642 1.19601 1.23338 1.03962 0.95629 0.87762 1.60790 1.56774 0.99241 1.04236 1.22017 0.93335 1.00401 0.91413 1.21777 0.94628 0.99056 1.03927 1.23304 1.02474 0.99409 0.93314 0.86015 1.22034 1.02409 0.97258 0.98160 1.86770 1.53064 1.40617 1.16409 1.22014 0.96664 0.96781 1.08550 1.21450 1.00452 0.91204 0.97724 1.21533 0.93488 1.00309 0.99652 1.21541 0.97115 0.95691 0.97058 1.21415 0.98964 0.92260 1.01165 1.19149 0.90924 0.91048 0.96587 0.94967 0.92039 0.94498 0.99868 0.99215 0.93006 0.92616 0.88295 0.88453 0.90226 0.91759 0.87715 0.92795 0.91884 0.89126 0.85101 0.82946 0.82638 0.84125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 8.88 71.98 0.64 -4.24 16 2 C -0.06 -2.73 1.58 -10.80 -0.02 -2.74 16 3 H 0.04 1.97 5.73 -2.39 -0.01 1.96 16 4 C 0.05 2.56 4.45 29.85 0.13 2.69 16 5 C -0.53 -31.58 8.41 25.60 0.22 -31.36 16 6 H 0.05 2.98 7.06 -2.91 -0.02 2.96 16 7 C 0.00 0.03 5.46 84.65 0.46 0.49 16 8 N -0.93 -59.19 13.29 21.45 0.28 -58.90 16 9 Si 0.96 46.57 29.54 68.60 2.03 48.59 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 13 C 0.02 0.81 2.80 86.30 0.24 1.06 16 14 N -0.49 -14.72 4.35 -697.81 -3.04 -17.75 16 15 C 0.05 1.23 5.68 85.72 0.49 1.72 16 16 C -0.15 -3.36 4.58 29.61 0.14 -3.23 16 17 C -0.06 -1.33 3.39 30.18 0.10 -1.23 16 18 H 0.12 2.54 8.14 -2.38 -0.02 2.52 16 19 C -0.14 -2.64 8.23 71.98 0.59 -2.04 16 20 S -0.21 -6.98 17.42 -56.49 -0.98 -7.96 16 21 C -0.13 -3.93 2.56 22.27 0.06 -3.87 16 22 C -0.09 -2.38 9.85 22.36 0.22 -2.16 16 23 C -0.13 -2.85 10.06 22.36 0.23 -2.63 16 24 C -0.10 -2.00 10.01 22.29 0.22 -1.78 16 25 C -0.12 -2.97 9.97 22.50 0.22 -2.74 16 26 C 0.12 3.57 2.47 37.94 0.09 3.67 16 27 H 0.03 1.44 6.95 -2.39 -0.02 1.42 16 28 H 0.06 2.26 7.63 -2.39 -0.02 2.24 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 31 H -0.01 -0.65 8.14 -2.39 -0.02 -0.66 16 32 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.10 3.79 2.49 -22.55 -0.06 3.73 16 35 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.08 1.63 5.91 -2.39 -0.01 1.61 16 37 H 0.06 1.73 5.93 -2.39 -0.01 1.71 16 38 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.05 1.14 4.84 -2.39 -0.01 1.13 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.13 3.40 8.06 -2.91 -0.02 3.37 16 43 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 44 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 45 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -71.09 344.65 3.24 -67.85 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.92 Total: 16.57 kcal Atomic # 6 Polarization: -52.44 SS G_CDS: 4.04 Total: -48.40 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -2.75 Total: -76.65 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Atomic # 16 Polarization: -6.98 SS G_CDS: -0.98 Total: -7.96 kcal Total: -71.09 3.24 -67.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589820880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.998 kcal (2) G-P(sol) polarization free energy of solvation -71.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds