Wall clock time and date at job start Tue Mar 31 2020 09:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46947 * 2 1 4 4 C 1.50698 * 109.47067 * 240.00150 * 2 1 3 5 5 H 1.08001 * 119.99590 * 239.99957 * 4 2 1 6 6 C 1.37873 * 120.00618 * 59.99706 * 4 2 1 7 7 N 1.31516 * 119.99728 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00365 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47045 * 59.99870 * 8 6 4 10 10 H 1.48496 * 109.46784 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46841 * 299.99909 * 8 6 4 12 12 N 1.46496 * 109.47536 * 119.99686 * 2 1 3 13 13 C 1.46504 * 119.99880 * 59.99717 * 12 2 1 14 14 C 1.34777 * 120.00266 * 240.00456 * 12 2 1 15 15 O 1.21274 * 120.00135 * 0.27234 * 14 12 2 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 12 2 17 17 C 1.53781 * 113.61383 * 279.13403 * 16 14 12 18 18 C 1.53957 * 87.01759 * 220.05254 * 17 16 14 19 19 C 1.50695 * 113.67011 * 139.93348 * 18 17 16 20 20 C 1.38244 * 119.97445 * 322.17007 * 19 18 17 21 21 C 1.38196 * 120.02771 * 179.72336 * 20 19 18 22 22 C 1.38455 * 119.97126 * 0.56754 * 21 20 19 23 23 F 1.35107 * 120.02525 * 179.68391 * 22 21 20 24 24 C 1.38461 * 119.95310 * 359.70236 * 22 21 20 25 25 C 1.38201 * 119.96828 * 0.02562 * 24 22 21 26 26 C 1.53783 * 87.11454 * 25.36149 * 18 17 16 27 27 H 1.08998 * 109.46710 * 300.00419 * 1 2 3 28 28 H 1.09002 * 109.47144 * 60.00116 * 1 2 3 29 29 H 1.08995 * 109.46867 * 180.02562 * 1 2 3 30 30 H 0.96995 * 120.00152 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47335 * 270.00735 * 13 12 2 32 32 H 1.09001 * 109.47076 * 30.00140 * 13 12 2 33 33 H 1.08996 * 109.47068 * 150.00167 * 13 12 2 34 34 H 1.09001 * 112.84823 * 50.33357 * 16 14 12 35 35 H 1.08998 * 113.61545 * 334.56772 * 17 16 14 36 36 H 1.08993 * 113.61303 * 105.47229 * 17 16 14 37 37 H 1.09004 * 113.53215 * 270.81277 * 18 17 16 38 38 H 1.08009 * 119.98399 * 359.97233 * 20 19 18 39 39 H 1.08004 * 120.01399 * 180.24894 * 21 20 19 40 40 H 1.07995 * 120.01457 * 179.97438 * 24 22 21 41 41 H 1.08005 * 119.98154 * 180.02562 * 25 24 22 42 42 H 1.08997 * 113.61737 * 220.09125 * 26 18 17 43 43 H 1.08998 * 113.68520 * 89.19645 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3214 -1.1205 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8269 -0.4200 -5.2204 11 1 3.8064 -1.1210 -4.0081 12 7 2.0184 -0.6905 1.1961 13 6 1.6645 -2.0931 1.4281 14 6 2.7932 -0.0355 2.0833 15 8 3.0821 1.1271 1.8939 16 6 3.2952 -0.7457 3.3141 17 6 2.2589 -0.8204 4.4478 18 6 3.4197 -0.5376 5.4188 19 6 3.0569 0.4049 6.5373 20 6 2.2190 1.4770 6.2927 21 6 1.8810 2.3387 7.3189 22 6 2.3912 2.1347 8.5898 23 9 2.0666 2.9801 9.5923 24 6 3.2348 1.0638 8.8324 25 6 3.5669 0.2002 7.8058 26 6 4.1339 0.1486 4.2424 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.7095 1.1617 -3.4844 31 1 0.7376 -2.1443 1.9994 32 1 1.5295 -2.5968 0.4709 33 1 2.4630 -2.5817 1.9864 34 1 3.7651 -1.7030 3.0882 35 1 1.5152 -0.0244 4.4128 36 1 1.8167 -1.8090 4.5707 37 1 3.9231 -1.4386 5.7696 38 1 1.8253 1.6388 5.3001 39 1 1.2232 3.1738 7.1285 40 1 3.6336 0.9040 9.8232 41 1 4.2245 -0.6354 7.9949 42 1 5.2031 -0.0589 4.1996 43 1 3.9047 1.2102 4.1500 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590034114.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:37 Heat of formation + Delta-G solvation = -39.834116 kcal Electronic energy + Delta-G solvation = -24614.816289 eV Core-core repulsion = 20960.935068 eV Total energy + Delta-G solvation = -3653.881222 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.03854 -40.50977 -38.94180 -37.10147 -35.22001 -32.83383 -31.34500 -30.98444 -29.43406 -26.24701 -25.76739 -25.64206 -25.19764 -23.37209 -22.61264 -20.82863 -19.42216 -18.32647 -17.77791 -16.89351 -16.40422 -16.26842 -15.78251 -15.73982 -15.23217 -15.04116 -14.53055 -14.31760 -13.93227 -13.71873 -13.35582 -13.09623 -12.94606 -12.52447 -12.41313 -12.39140 -12.10016 -11.70936 -11.59400 -11.47803 -11.34040 -11.05260 -10.88286 -10.83623 -10.67849 -10.53785 -10.39416 -10.24800 -10.16441 -9.28580 -9.18882 -8.82709 -8.64563 -8.42318 -7.56954 -6.07748 -4.15911 0.95084 1.05403 3.26759 3.31102 3.32392 3.35131 3.41540 3.96232 4.09616 4.38342 4.43977 4.54481 4.67670 4.71600 4.75032 4.89494 4.98542 5.10184 5.18520 5.23073 5.38547 5.53270 5.70406 5.73771 5.81526 5.82934 5.85979 5.93647 6.00571 6.02946 6.07796 6.11655 6.34825 6.38075 6.54634 6.71912 6.75140 6.83557 7.06847 7.44005 7.54232 7.71749 8.01897 8.20420 8.55943 8.83159 9.08902 9.50748 10.97523 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.031115 B = 0.002803 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.681424 B = 9987.093494 C =10354.834303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.062 0.938 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.591 5.591 13 C 0.086 3.914 14 C 0.511 3.489 15 O -0.554 6.554 16 C -0.137 4.137 17 C -0.113 4.113 18 C -0.076 4.076 19 C -0.074 4.074 20 C -0.083 4.083 21 C -0.149 4.149 22 C 0.087 3.913 23 F -0.144 7.144 24 C -0.155 4.155 25 C -0.089 4.089 26 C -0.105 4.105 27 H 0.010 0.990 28 H 0.092 0.908 29 H 0.029 0.971 30 H 0.264 0.736 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.071 0.929 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.770 -4.589 19.989 20.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.321 5.321 13 C -0.059 4.059 14 C 0.298 3.702 15 O -0.433 6.433 16 C -0.158 4.158 17 C -0.151 4.151 18 C -0.094 4.094 19 C -0.074 4.074 20 C -0.101 4.101 21 C -0.168 4.168 22 C 0.068 3.932 23 F -0.123 7.123 24 C -0.173 4.173 25 C -0.107 4.107 26 C -0.143 4.143 27 H 0.029 0.971 28 H 0.111 0.889 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.090 0.910 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.796 -3.825 19.740 20.301 hybrid contribution 0.190 -0.472 -0.739 0.897 sum 2.986 -4.297 19.001 19.709 Atomic orbital electron populations 1.22075 0.98280 0.99333 1.00702 1.18914 0.90814 0.94508 0.80051 0.92003 1.21287 1.31856 1.13019 0.90370 0.92341 1.24893 0.94941 0.94981 0.98954 1.69868 1.36310 1.22560 1.23860 0.86558 0.79240 0.79566 0.82039 1.20242 1.21162 1.20255 1.48222 1.48917 1.11581 1.23418 1.21583 0.98723 0.83402 1.02151 1.20191 0.79107 0.87037 0.83867 1.90632 1.58776 1.17137 1.76734 1.22725 0.99066 1.00687 0.93363 1.23001 0.95927 1.02833 0.93293 1.21592 0.98435 0.97537 0.91860 1.19834 0.96998 0.96141 0.94438 1.21034 0.96572 0.93312 0.99221 1.21176 1.02358 1.01713 0.91563 1.17741 0.99427 0.90684 0.85317 1.91488 1.91416 1.69659 1.59702 1.21102 1.00062 0.95372 1.00801 1.20912 0.99186 0.98920 0.91707 1.22912 0.98820 1.00512 0.92061 0.97118 0.88915 0.95209 0.92626 0.93986 0.90313 0.92824 0.87330 0.89363 0.90533 0.88095 0.84550 0.84733 0.84976 0.85083 0.90985 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.97 37.16 0.33 -3.13 16 2 C 0.26 6.52 2.64 -69.08 -0.18 6.34 16 3 H 0.06 1.83 6.90 -51.93 -0.36 1.47 16 4 C -0.53 -14.14 7.99 -34.44 -0.28 -14.41 16 5 H 0.06 1.54 7.33 -52.49 -0.38 1.15 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 8 Si 0.90 20.93 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.59 -12.27 2.75 -175.26 -0.48 -12.75 16 13 C 0.09 1.38 9.18 59.85 0.55 1.93 16 14 C 0.51 10.16 7.20 -10.98 -0.08 10.08 16 15 O -0.55 -13.31 15.23 5.56 0.08 -13.22 16 16 C -0.14 -1.89 2.93 -90.95 -0.27 -2.15 16 17 C -0.11 -1.27 6.93 -25.83 -0.18 -1.45 16 18 C -0.08 -0.75 3.98 -90.87 -0.36 -1.11 16 19 C -0.07 -0.76 5.29 -104.62 -0.55 -1.31 16 20 C -0.08 -0.93 8.60 -39.59 -0.34 -1.27 16 21 C -0.15 -1.61 10.03 -39.52 -0.40 -2.01 16 22 C 0.09 0.95 7.30 -39.42 -0.29 0.66 16 23 F -0.14 -1.66 17.27 2.25 0.04 -1.62 16 24 C -0.15 -1.44 10.03 -39.51 -0.40 -1.84 16 25 C -0.09 -0.80 9.71 -39.59 -0.38 -1.18 16 26 C -0.11 -1.32 6.86 -25.92 -0.18 -1.50 16 27 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 29 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.38 7.02 -51.93 -0.36 1.01 16 33 H 0.05 0.70 6.25 -51.93 -0.32 0.37 16 34 H 0.11 1.30 7.02 -51.93 -0.36 0.93 16 35 H 0.09 1.10 6.29 -51.93 -0.33 0.77 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.79 8.10 -51.93 -0.42 0.37 16 38 H 0.14 1.58 6.68 -52.48 -0.35 1.23 16 39 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 41 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.10 1.44 7.02 -51.93 -0.36 1.08 16 LS Contribution 351.76 15.07 5.30 5.30 Total: -1.00 -31.05 351.76 -8.61 -39.66 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.07 Total: 1.87 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -3.09 Total: -10.67 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.15 Total: -37.22 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.05 -8.61 -39.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590034114.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.174 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds