Wall clock time and date at job start Tue Mar 31 2020 09:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46947 * 2 1 4 4 C 1.50698 * 109.47067 * 240.00150 * 2 1 3 5 5 H 1.08001 * 119.99590 * 239.99957 * 4 2 1 6 6 C 1.37873 * 120.00618 * 59.99706 * 4 2 1 7 7 N 1.31516 * 119.99728 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00365 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47045 * 59.99870 * 8 6 4 10 10 H 1.48496 * 109.46784 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46841 * 299.99909 * 8 6 4 12 12 N 1.46496 * 109.47536 * 119.99686 * 2 1 3 13 13 C 1.46504 * 119.99880 * 59.99717 * 12 2 1 14 14 C 1.34777 * 120.00266 * 240.00456 * 12 2 1 15 15 O 1.21274 * 120.00135 * 0.27234 * 14 12 2 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 12 2 17 17 C 1.53781 * 113.61383 * 279.13403 * 16 14 12 18 18 C 1.53957 * 87.01759 * 220.05254 * 17 16 14 19 19 C 1.50695 * 113.67011 * 139.93348 * 18 17 16 20 20 C 1.38244 * 119.97445 * 322.17007 * 19 18 17 21 21 C 1.38196 * 120.02771 * 179.72336 * 20 19 18 22 22 C 1.38455 * 119.97126 * 0.56754 * 21 20 19 23 23 F 1.35107 * 120.02525 * 179.68391 * 22 21 20 24 24 C 1.38461 * 119.95310 * 359.70236 * 22 21 20 25 25 C 1.38201 * 119.96828 * 0.02562 * 24 22 21 26 26 C 1.53783 * 87.11454 * 25.36149 * 18 17 16 27 27 H 1.08998 * 109.46710 * 300.00419 * 1 2 3 28 28 H 1.09002 * 109.47144 * 60.00116 * 1 2 3 29 29 H 1.08995 * 109.46867 * 180.02562 * 1 2 3 30 30 H 0.96995 * 120.00152 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47335 * 270.00735 * 13 12 2 32 32 H 1.09001 * 109.47076 * 30.00140 * 13 12 2 33 33 H 1.08996 * 109.47068 * 150.00167 * 13 12 2 34 34 H 1.09001 * 112.84823 * 50.33357 * 16 14 12 35 35 H 1.08998 * 113.61545 * 334.56772 * 17 16 14 36 36 H 1.08993 * 113.61303 * 105.47229 * 17 16 14 37 37 H 1.09004 * 113.53215 * 270.81277 * 18 17 16 38 38 H 1.08009 * 119.98399 * 359.97233 * 20 19 18 39 39 H 1.08004 * 120.01399 * 180.24894 * 21 20 19 40 40 H 1.07995 * 120.01457 * 179.97438 * 24 22 21 41 41 H 1.08005 * 119.98154 * 180.02562 * 25 24 22 42 42 H 1.08997 * 113.61737 * 220.09125 * 26 18 17 43 43 H 1.08998 * 113.68520 * 89.19645 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3214 -1.1205 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8269 -0.4200 -5.2204 11 1 3.8064 -1.1210 -4.0081 12 7 2.0184 -0.6905 1.1961 13 6 1.6645 -2.0931 1.4281 14 6 2.7932 -0.0355 2.0833 15 8 3.0821 1.1271 1.8939 16 6 3.2952 -0.7457 3.3141 17 6 2.2589 -0.8204 4.4478 18 6 3.4197 -0.5376 5.4188 19 6 3.0569 0.4049 6.5373 20 6 2.2190 1.4770 6.2927 21 6 1.8810 2.3387 7.3189 22 6 2.3912 2.1347 8.5898 23 9 2.0666 2.9801 9.5923 24 6 3.2348 1.0638 8.8324 25 6 3.5669 0.2002 7.8058 26 6 4.1339 0.1486 4.2424 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.7095 1.1617 -3.4844 31 1 0.7376 -2.1443 1.9994 32 1 1.5295 -2.5968 0.4709 33 1 2.4630 -2.5817 1.9864 34 1 3.7651 -1.7030 3.0882 35 1 1.5152 -0.0244 4.4128 36 1 1.8167 -1.8090 4.5707 37 1 3.9231 -1.4386 5.7696 38 1 1.8253 1.6388 5.3001 39 1 1.2232 3.1738 7.1285 40 1 3.6336 0.9040 9.8232 41 1 4.2245 -0.6354 7.9949 42 1 5.2031 -0.0589 4.1996 43 1 3.9047 1.2102 4.1500 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590034114.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:36 Heat of formation + Delta-G solvation = -56.231082 kcal Electronic energy + Delta-G solvation = -24615.527315 eV Core-core repulsion = 20960.935068 eV Total energy + Delta-G solvation = -3654.592247 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.88727 -41.59822 -40.11184 -38.23386 -36.96799 -34.75514 -32.13717 -32.00224 -31.13636 -27.58150 -27.33400 -26.90698 -26.57047 -24.22367 -23.70244 -22.28657 -20.49277 -19.63319 -18.72302 -18.47347 -17.99526 -17.33423 -17.16959 -16.59154 -16.51835 -16.33134 -15.85815 -15.59856 -15.18518 -14.55996 -14.44265 -14.32059 -14.16597 -13.93940 -13.78915 -13.53008 -13.40743 -13.08939 -13.01105 -12.76942 -12.72922 -12.64663 -12.57003 -12.23491 -12.15689 -12.11682 -11.68666 -11.48894 -11.31450 -11.19074 -10.57922 -10.34066 -10.04094 -9.45176 -9.27282 -8.14516 -6.31514 0.15322 0.29986 1.41002 1.43594 1.50968 1.86579 2.34924 2.54297 2.60059 3.13196 3.30860 3.53551 3.66459 3.74999 3.83320 3.97503 3.99147 4.15151 4.18957 4.35531 4.41125 4.57634 4.73207 4.76713 4.81651 4.83858 4.89327 4.90676 4.99875 5.04587 5.07182 5.08238 5.13340 5.17082 5.19540 5.31296 5.44416 5.48102 5.62331 5.68689 5.73338 5.96050 6.06297 6.17389 6.77291 6.91748 7.34207 7.55212 8.89642 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.031115 B = 0.002803 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.681424 B = 9987.093494 C =10354.834303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.261 3.739 3 H 0.004 0.996 4 C -0.539 4.539 5 H 0.063 0.937 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.965 3.035 9 H -0.261 1.261 10 H -0.285 1.285 11 H -0.277 1.277 12 N -0.600 5.600 13 C 0.082 3.918 14 C 0.499 3.501 15 O -0.610 6.610 16 C -0.131 4.131 17 C -0.109 4.109 18 C -0.052 4.052 19 C -0.081 4.081 20 C -0.099 4.099 21 C -0.163 4.163 22 C 0.070 3.930 23 F -0.152 7.152 24 C -0.152 4.152 25 C -0.079 4.079 26 C -0.113 4.113 27 H 0.017 0.983 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.264 0.736 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.141 0.859 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.141 0.859 38 H 0.119 0.881 39 H 0.135 0.865 40 H 0.156 0.844 41 H 0.168 0.832 42 H 0.086 0.914 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.988 -8.222 21.833 23.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.159 3.841 3 H 0.022 0.978 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.790 3.210 9 H -0.185 1.185 10 H -0.210 1.210 11 H -0.202 1.202 12 N -0.329 5.329 13 C -0.061 4.061 14 C 0.288 3.712 15 O -0.493 6.493 16 C -0.152 4.152 17 C -0.147 4.147 18 C -0.070 4.070 19 C -0.081 4.081 20 C -0.117 4.117 21 C -0.182 4.182 22 C 0.051 3.949 23 F -0.131 7.131 24 C -0.170 4.170 25 C -0.097 4.097 26 C -0.150 4.150 27 H 0.036 0.964 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.159 0.841 35 H 0.085 0.915 36 H 0.125 0.875 37 H 0.159 0.841 38 H 0.137 0.863 39 H 0.152 0.848 40 H 0.174 0.826 41 H 0.185 0.815 42 H 0.105 0.895 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.003 -7.500 21.612 23.224 hybrid contribution -0.189 0.738 -1.286 1.495 sum 3.815 -6.762 20.326 21.758 Atomic orbital electron populations 1.21853 0.97362 1.00006 0.99684 1.18473 0.91472 0.92090 0.82113 0.97831 1.21578 1.31855 1.13100 0.91177 0.91931 1.25771 0.95085 0.95654 1.02140 1.70026 1.37411 1.23969 1.24453 0.85503 0.78413 0.79034 0.78040 1.18516 1.21043 1.20222 1.48247 1.49060 1.13432 1.22198 1.21841 1.01346 0.80517 1.02357 1.21389 0.77982 0.86692 0.85111 1.90602 1.60596 1.19948 1.78183 1.22857 1.00494 1.01321 0.90485 1.23013 0.95640 1.03805 0.92202 1.21560 0.96899 0.98142 0.90432 1.19962 0.96882 0.95815 0.95460 1.21005 0.97713 0.94447 0.98517 1.21249 1.02918 1.02043 0.91980 1.17980 1.00366 0.91478 0.85043 1.91466 1.91623 1.70080 1.59885 1.21432 0.98985 0.94385 1.02199 1.21267 0.98546 0.99363 0.90486 1.22908 0.99839 0.98739 0.93550 0.96404 0.91630 0.93446 0.92691 0.91818 0.91732 0.88747 0.84139 0.91539 0.87470 0.84123 0.86304 0.84754 0.82589 0.81489 0.89528 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.39 8.97 71.98 0.65 -5.74 16 2 C 0.26 13.73 2.64 44.25 0.12 13.85 16 3 H 0.00 0.24 6.90 -2.38 -0.02 0.22 16 4 C -0.54 -29.41 7.99 25.60 0.20 -29.20 16 5 H 0.06 3.28 7.33 -2.91 -0.02 3.26 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -53.74 11.32 21.45 0.24 -53.50 16 8 Si 0.97 43.08 29.54 68.60 2.03 45.11 16 9 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 12 N -0.60 -24.96 2.75 -826.79 -2.28 -27.24 16 13 C 0.08 2.44 9.18 127.77 1.17 3.61 16 14 C 0.50 20.11 7.20 87.66 0.63 20.74 16 15 O -0.61 -31.24 15.23 -3.01 -0.05 -31.29 16 16 C -0.13 -3.30 2.93 -11.01 -0.03 -3.33 16 17 C -0.11 -2.14 6.93 31.18 0.22 -1.92 16 18 C -0.05 -0.84 3.98 -10.95 -0.04 -0.88 16 19 C -0.08 -1.47 5.29 -19.86 -0.11 -1.57 16 20 C -0.10 -2.22 8.60 22.26 0.19 -2.03 16 21 C -0.16 -3.62 10.03 22.31 0.22 -3.39 16 22 C 0.07 1.48 7.30 22.37 0.16 1.64 16 23 F -0.15 -3.45 17.27 44.97 0.78 -2.67 16 24 C -0.15 -2.41 10.03 22.31 0.22 -2.18 16 25 C -0.08 -1.10 9.71 22.26 0.22 -0.88 16 26 C -0.11 -2.65 6.86 31.12 0.21 -2.44 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 3.57 6.07 -2.39 -0.01 3.56 16 29 H 0.05 2.09 7.67 -2.39 -0.02 2.07 16 30 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 2.13 7.02 -2.39 -0.02 2.11 16 33 H 0.09 2.03 6.25 -2.39 -0.01 2.02 16 34 H 0.14 2.68 7.02 -2.39 -0.02 2.67 16 35 H 0.07 1.63 6.29 -2.39 -0.02 1.61 16 36 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.14 1.26 8.10 -2.39 -0.02 1.24 16 38 H 0.12 3.03 6.68 -2.91 -0.02 3.01 16 39 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 40 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 41 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 42 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.06 1.96 7.02 -2.39 -0.02 1.94 16 Total: -1.00 -73.26 351.76 6.22 -67.04 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 1.01 Total: 15.15 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 4.49 Total: -12.60 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -2.03 Total: -80.74 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.05 Total: -31.29 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.78 Total: -2.67 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -73.26 6.22 -67.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590034114.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.808 kcal (2) G-P(sol) polarization free energy of solvation -73.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds