Wall clock time and date at job start Tue Mar 31 2020 09:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 C 1.46506 * 119.99453 * 300.00085 * 12 2 1 14 14 C 1.34773 * 120.00731 * 120.00078 * 12 2 1 15 15 O 1.21282 * 119.99450 * 359.97438 * 14 12 2 16 16 C 1.50703 * 120.00513 * 179.97438 * 14 12 2 17 17 C 1.53774 * 113.61122 * 279.13772 * 16 14 12 18 18 C 1.54048 * 86.98624 * 270.83358 * 17 16 14 19 19 C 1.50698 * 113.70003 * 220.01070 * 18 17 16 20 20 C 1.38252 * 119.97187 * 37.26463 * 19 18 17 21 21 C 1.38202 * 120.02263 * 179.72494 * 20 19 18 22 22 C 1.38454 * 119.97336 * 0.56740 * 21 20 19 23 23 F 1.35100 * 120.02581 * 179.68621 * 22 21 20 24 24 C 1.38467 * 119.95202 * 359.70273 * 22 21 20 25 25 C 1.38193 * 119.97149 * 0.02562 * 24 22 21 26 26 C 1.53778 * 87.07897 * 334.57138 * 18 17 16 27 27 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 28 28 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 29 29 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 30 30 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47497 * 90.00369 * 13 12 2 32 32 H 1.09004 * 109.46702 * 209.99812 * 13 12 2 33 33 H 1.08998 * 109.47259 * 329.99392 * 13 12 2 34 34 H 1.08998 * 112.84393 * 50.32906 * 16 14 12 35 35 H 1.09001 * 113.61978 * 25.43168 * 17 16 14 36 36 H 1.09004 * 113.61484 * 156.33726 * 17 16 14 37 37 H 1.09005 * 113.61369 * 89.11575 * 18 17 16 38 38 H 1.07993 * 119.98355 * 359.97295 * 20 19 18 39 39 H 1.07997 * 120.00624 * 180.25203 * 21 20 19 40 40 H 1.07997 * 120.01521 * 179.97438 * 24 22 21 41 41 H 1.07996 * 119.99036 * 179.97438 * 25 24 22 42 42 H 1.08994 * 113.61565 * 270.88081 * 26 18 17 43 43 H 1.09000 * 113.69577 * 139.97889 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.1365 -2.2943 3.6035 10 1 3.1332 -0.1974 4.8220 11 1 1.1526 -1.5965 4.8103 12 7 2.0183 -0.6904 -1.1962 13 6 1.6643 -2.0931 -1.4282 14 6 2.7932 -0.0355 -2.0834 15 8 3.0858 1.1257 -1.8916 16 6 3.2960 -0.7460 -3.3136 17 6 4.5318 -1.6240 -3.0560 18 6 5.3816 -0.3766 -3.3642 19 6 6.6160 -0.6703 -4.1772 20 6 6.5735 -1.6235 -5.1776 21 6 7.7034 -1.8897 -5.9276 22 6 8.8814 -1.2097 -5.6688 23 9 9.9882 -1.4736 -6.3971 24 6 8.9243 -0.2592 -4.6628 25 6 7.7917 0.0093 -3.9180 26 6 4.1960 0.1266 -4.2044 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.7006 1.1552 3.4844 31 1 0.7375 -2.1442 -1.9995 32 1 2.4628 -2.5817 -1.9866 33 1 1.5295 -2.5968 -0.4710 34 1 2.5037 -1.2569 -3.8607 35 1 4.6161 -1.9677 -2.0250 36 1 4.6560 -2.4272 -3.7824 37 1 5.5881 0.2384 -2.4882 38 1 5.6559 -2.1574 -5.3757 39 1 7.6688 -2.6315 -6.7117 40 1 9.8427 0.2715 -4.4599 41 1 7.8249 0.7503 -3.1330 42 1 4.2283 -0.1987 -5.2441 43 1 4.0081 1.1953 -4.1009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590034115.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:40 Heat of formation + Delta-G solvation = -39.002325 kcal Electronic energy + Delta-G solvation = -24674.040065 eV Core-core repulsion = 21020.194913 eV Total energy + Delta-G solvation = -3653.845152 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.04601 -40.58624 -38.96608 -36.97673 -35.20405 -32.84990 -31.33806 -30.97053 -29.41559 -26.19491 -25.70190 -25.59740 -25.20639 -23.42279 -22.56856 -21.03036 -19.58887 -17.93004 -17.79400 -16.84059 -16.45444 -16.28835 -15.75410 -15.68888 -15.45018 -14.81712 -14.62868 -14.21139 -13.91710 -13.68187 -13.24868 -13.12225 -13.03056 -12.50617 -12.46013 -12.35324 -12.23374 -11.80463 -11.53327 -11.46024 -11.27394 -11.07774 -10.89597 -10.84782 -10.66962 -10.37339 -10.27017 -10.21126 -10.15046 -9.28580 -9.18635 -8.89813 -8.61858 -8.43996 -7.58597 -6.08972 -4.17003 0.96815 1.05568 3.24193 3.30191 3.33182 3.36054 3.39451 3.91455 4.09236 4.37367 4.49172 4.56864 4.70024 4.71247 4.79714 4.96643 5.04266 5.11183 5.20461 5.22513 5.47220 5.62175 5.68363 5.74678 5.79285 5.89272 5.90562 5.96149 6.04669 6.06672 6.08378 6.20237 6.36198 6.39098 6.56549 6.72583 6.74788 6.83334 7.06110 7.42639 7.53203 7.70801 8.00802 8.19066 8.53871 8.82268 9.06696 9.49790 10.96323 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.021310 B = 0.003058 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.645792 B = 9154.110489 C = 9744.142107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.590 5.590 13 C 0.083 3.917 14 C 0.520 3.480 15 O -0.551 6.551 16 C -0.136 4.136 17 C -0.118 4.118 18 C -0.074 4.074 19 C -0.069 4.069 20 C -0.090 4.090 21 C -0.152 4.152 22 C 0.085 3.915 23 F -0.145 7.145 24 C -0.151 4.151 25 C -0.086 4.086 26 C -0.109 4.109 27 H 0.093 0.907 28 H 0.010 0.990 29 H 0.029 0.971 30 H 0.263 0.737 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.084 0.916 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.275 -6.634 -15.700 19.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.320 5.320 13 C -0.061 4.061 14 C 0.306 3.694 15 O -0.430 6.430 16 C -0.158 4.158 17 C -0.156 4.156 18 C -0.092 4.092 19 C -0.069 4.069 20 C -0.108 4.108 21 C -0.171 4.171 22 C 0.066 3.934 23 F -0.123 7.123 24 C -0.170 4.170 25 C -0.104 4.104 26 C -0.147 4.147 27 H 0.112 0.888 28 H 0.029 0.971 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.125 0.875 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.102 0.898 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.359 -5.922 -15.447 19.007 hybrid contribution 0.428 -0.681 0.765 1.110 sum 9.787 -6.603 -14.682 18.840 Atomic orbital electron populations 1.22083 0.98255 0.99371 1.00777 1.18938 0.90846 0.94521 0.79996 0.91955 1.21352 1.31654 1.13036 0.90296 0.92208 1.24894 0.94944 0.94990 0.98973 1.69887 1.36349 1.22684 1.23643 0.86455 0.78590 0.79620 0.82815 1.19806 1.20903 1.20949 1.48182 1.48805 1.11614 1.23442 1.21617 0.98813 0.83387 1.02281 1.19848 0.79011 0.86787 0.83742 1.90634 1.58604 1.17122 1.76663 1.22416 0.97878 0.98843 0.96627 1.23062 0.93671 0.95934 1.02911 1.21658 0.90486 0.98479 0.98605 1.19941 0.95145 0.95684 0.96175 1.20905 0.97899 0.97302 0.94687 1.21106 0.92121 1.01726 1.02139 1.17726 0.83306 0.98825 0.93580 1.91482 1.51475 1.93184 1.76200 1.21149 1.00275 0.99024 0.96555 1.21029 0.91399 0.99089 0.98904 1.22850 0.93367 1.01438 0.97051 0.88847 0.97065 0.95195 0.92738 0.94040 0.92575 0.90209 0.88680 0.90344 0.89210 0.87513 0.84877 0.84942 0.84895 0.84808 0.89778 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.97 37.16 0.33 -3.15 16 2 C 0.26 6.48 2.64 -69.08 -0.18 6.30 16 3 H 0.06 1.83 6.90 -51.93 -0.36 1.47 16 4 C -0.52 -13.95 7.99 -34.44 -0.28 -14.22 16 5 H 0.06 1.56 7.33 -52.49 -0.38 1.18 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.92 11.31 55.43 0.63 -24.30 16 8 Si 0.90 20.80 29.54 -169.99 -5.02 15.77 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.59 -12.22 2.75 -175.25 -0.48 -12.70 16 13 C 0.08 1.35 9.12 59.85 0.55 1.89 16 14 C 0.52 10.28 6.92 -10.99 -0.08 10.20 16 15 O -0.55 -13.08 15.16 5.56 0.08 -13.00 16 16 C -0.14 -1.89 2.99 -90.96 -0.27 -2.16 16 17 C -0.12 -1.41 6.10 -25.78 -0.16 -1.57 16 18 C -0.07 -0.93 3.65 -90.82 -0.33 -1.26 16 19 C -0.07 -0.76 5.29 -104.61 -0.55 -1.31 16 20 C -0.09 -0.86 8.63 -39.59 -0.34 -1.20 16 21 C -0.15 -1.45 10.03 -39.51 -0.40 -1.85 16 22 C 0.08 0.91 7.30 -39.42 -0.29 0.62 16 23 F -0.14 -1.63 17.27 2.25 0.04 -1.59 16 24 C -0.15 -1.54 10.03 -39.51 -0.40 -1.94 16 25 C -0.09 -0.92 9.71 -39.59 -0.38 -1.31 16 26 C -0.11 -1.38 6.92 -25.92 -0.18 -1.56 16 27 H 0.09 2.44 6.06 -51.93 -0.31 2.13 16 28 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.74 5.84 -51.93 -0.30 0.43 16 33 H 0.08 1.39 7.02 -51.93 -0.36 1.03 16 34 H 0.10 1.12 7.91 -51.93 -0.41 0.71 16 35 H 0.08 1.06 7.87 -51.93 -0.41 0.65 16 36 H 0.09 0.82 6.31 -51.93 -0.33 0.49 16 37 H 0.11 1.59 8.09 -51.93 -0.42 1.17 16 38 H 0.13 1.02 6.65 -52.49 -0.35 0.67 16 39 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.13 1.31 8.05 -52.49 -0.42 0.88 16 42 H 0.08 0.85 7.73 -51.93 -0.40 0.45 16 43 H 0.09 1.26 7.42 -51.93 -0.39 0.88 16 LS Contribution 350.49 15.07 5.28 5.28 Total: -1.00 -30.60 350.49 -8.59 -39.19 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.08 Total: 2.21 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -3.05 Total: -10.87 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.14 Total: -37.00 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.60 -8.59 -39.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590034115.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.191 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds