Wall clock time and date at job start Tue Mar 31 2020 09:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 C 1.46506 * 119.99453 * 300.00085 * 12 2 1 14 14 C 1.34773 * 120.00731 * 120.00078 * 12 2 1 15 15 O 1.21282 * 119.99450 * 359.97438 * 14 12 2 16 16 C 1.50703 * 120.00513 * 179.97438 * 14 12 2 17 17 C 1.53774 * 113.61122 * 279.13772 * 16 14 12 18 18 C 1.54048 * 86.98624 * 270.83358 * 17 16 14 19 19 C 1.50698 * 113.70003 * 220.01070 * 18 17 16 20 20 C 1.38252 * 119.97187 * 37.26463 * 19 18 17 21 21 C 1.38202 * 120.02263 * 179.72494 * 20 19 18 22 22 C 1.38454 * 119.97336 * 0.56740 * 21 20 19 23 23 F 1.35100 * 120.02581 * 179.68621 * 22 21 20 24 24 C 1.38467 * 119.95202 * 359.70273 * 22 21 20 25 25 C 1.38193 * 119.97149 * 0.02562 * 24 22 21 26 26 C 1.53778 * 87.07897 * 334.57138 * 18 17 16 27 27 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 28 28 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 29 29 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 30 30 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47497 * 90.00369 * 13 12 2 32 32 H 1.09004 * 109.46702 * 209.99812 * 13 12 2 33 33 H 1.08998 * 109.47259 * 329.99392 * 13 12 2 34 34 H 1.08998 * 112.84393 * 50.32906 * 16 14 12 35 35 H 1.09001 * 113.61978 * 25.43168 * 17 16 14 36 36 H 1.09004 * 113.61484 * 156.33726 * 17 16 14 37 37 H 1.09005 * 113.61369 * 89.11575 * 18 17 16 38 38 H 1.07993 * 119.98355 * 359.97295 * 20 19 18 39 39 H 1.07997 * 120.00624 * 180.25203 * 21 20 19 40 40 H 1.07997 * 120.01521 * 179.97438 * 24 22 21 41 41 H 1.07996 * 119.99036 * 179.97438 * 25 24 22 42 42 H 1.08994 * 113.61565 * 270.88081 * 26 18 17 43 43 H 1.09000 * 113.69577 * 139.97889 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.1365 -2.2943 3.6035 10 1 3.1332 -0.1974 4.8220 11 1 1.1526 -1.5965 4.8103 12 7 2.0183 -0.6904 -1.1962 13 6 1.6643 -2.0931 -1.4282 14 6 2.7932 -0.0355 -2.0834 15 8 3.0858 1.1257 -1.8916 16 6 3.2960 -0.7460 -3.3136 17 6 4.5318 -1.6240 -3.0560 18 6 5.3816 -0.3766 -3.3642 19 6 6.6160 -0.6703 -4.1772 20 6 6.5735 -1.6235 -5.1776 21 6 7.7034 -1.8897 -5.9276 22 6 8.8814 -1.2097 -5.6688 23 9 9.9882 -1.4736 -6.3971 24 6 8.9243 -0.2592 -4.6628 25 6 7.7917 0.0093 -3.9180 26 6 4.1960 0.1266 -4.2044 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.7006 1.1552 3.4844 31 1 0.7375 -2.1442 -1.9995 32 1 2.4628 -2.5817 -1.9866 33 1 1.5295 -2.5968 -0.4710 34 1 2.5037 -1.2569 -3.8607 35 1 4.6161 -1.9677 -2.0250 36 1 4.6560 -2.4272 -3.7824 37 1 5.5881 0.2384 -2.4882 38 1 5.6559 -2.1574 -5.3757 39 1 7.6688 -2.6315 -6.7117 40 1 9.8427 0.2715 -4.4599 41 1 7.8249 0.7503 -3.1330 42 1 4.2283 -0.1987 -5.2441 43 1 4.0081 1.1953 -4.1009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590034115.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:39 Heat of formation + Delta-G solvation = -54.935333 kcal Electronic energy + Delta-G solvation = -24674.730972 eV Core-core repulsion = 21020.194913 eV Total energy + Delta-G solvation = -3654.536059 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.86191 -41.74285 -40.08722 -38.18620 -36.92441 -34.76359 -32.10701 -32.01515 -31.11455 -27.57088 -27.32900 -26.81454 -26.57681 -24.32106 -23.67953 -22.32306 -20.95750 -19.20227 -18.71934 -18.47018 -17.87524 -17.36839 -17.07966 -16.80094 -16.56051 -16.27591 -15.92552 -15.35044 -15.27693 -14.62209 -14.43866 -14.25543 -14.12014 -13.92260 -13.77885 -13.57825 -13.39505 -13.25339 -13.03730 -12.88812 -12.73744 -12.62414 -12.50064 -12.20658 -12.12837 -12.10416 -11.78749 -11.40460 -11.21571 -11.14513 -10.60932 -10.40194 -10.02575 -9.43810 -9.28137 -8.14717 -6.31191 0.17134 0.31392 1.40074 1.41900 1.52984 1.83102 2.33101 2.51824 2.60987 3.13279 3.32357 3.54913 3.60665 3.72004 3.87104 3.91658 3.99191 4.02095 4.33346 4.38541 4.49438 4.55291 4.67700 4.76551 4.79421 4.80411 4.90153 4.95400 4.98271 5.06430 5.07526 5.09239 5.12665 5.17901 5.19981 5.29547 5.44464 5.49996 5.64139 5.68661 5.69605 5.96691 6.05756 6.17621 6.77758 6.90046 7.34103 7.53787 8.89783 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.021310 B = 0.003058 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.645792 B = 9154.110489 C = 9744.142107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.005 0.995 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.263 1.263 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.599 5.599 13 C 0.080 3.920 14 C 0.507 3.493 15 O -0.605 6.605 16 C -0.131 4.131 17 C -0.104 4.104 18 C -0.076 4.076 19 C -0.077 4.077 20 C -0.083 4.083 21 C -0.147 4.147 22 C 0.070 3.930 23 F -0.151 7.151 24 C -0.156 4.156 25 C -0.102 4.102 26 C -0.102 4.102 27 H 0.066 0.934 28 H 0.018 0.982 29 H 0.047 0.953 30 H 0.264 0.736 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.132 0.868 35 H 0.061 0.939 36 H 0.135 0.865 37 H 0.067 0.933 38 H 0.164 0.836 39 H 0.157 0.843 40 H 0.143 0.857 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.537 -9.925 -17.688 22.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.158 3.842 3 H 0.023 0.977 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.187 1.187 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.329 5.329 13 C -0.063 4.063 14 C 0.296 3.704 15 O -0.488 6.488 16 C -0.152 4.152 17 C -0.141 4.141 18 C -0.094 4.094 19 C -0.077 4.077 20 C -0.101 4.101 21 C -0.166 4.166 22 C 0.051 3.949 23 F -0.129 7.129 24 C -0.175 4.175 25 C -0.120 4.120 26 C -0.140 4.140 27 H 0.085 0.915 28 H 0.037 0.963 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.149 0.851 35 H 0.079 0.921 36 H 0.153 0.847 37 H 0.086 0.914 38 H 0.181 0.819 39 H 0.175 0.825 40 H 0.161 0.839 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.619 -9.252 -17.457 21.975 hybrid contribution 0.378 0.415 1.363 1.474 sum 9.997 -8.837 -16.095 20.906 Atomic orbital electron populations 1.21866 0.97289 1.00075 0.99814 1.18501 0.91530 0.92140 0.81991 0.97655 1.21612 1.31592 1.13029 0.91115 0.91996 1.25744 0.95108 0.95670 1.02067 1.70033 1.37417 1.24050 1.24303 0.85421 0.78217 0.78538 0.78933 1.18730 1.21269 1.20020 1.48195 1.48986 1.13416 1.22294 1.21865 1.01355 0.80559 1.02486 1.20980 0.77875 0.86448 0.85069 1.90607 1.60221 1.19852 1.78126 1.22366 0.99615 0.99337 0.93893 1.23131 0.91447 0.96256 1.03243 1.21482 0.91683 0.98606 0.97648 1.19867 0.94250 0.96705 0.96864 1.21146 0.99010 0.96448 0.93480 1.21395 0.91350 1.01536 1.02316 1.17979 0.83776 0.99377 0.93814 1.91468 1.51899 1.93253 1.76325 1.21267 1.00524 0.99199 0.96488 1.21111 0.91989 0.99559 0.99327 1.22905 0.92695 0.99555 0.98838 0.91543 0.96257 0.93423 0.92706 0.91689 0.88856 0.91614 0.85062 0.92061 0.84688 0.91440 0.81882 0.82504 0.83910 0.85252 0.85877 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.40 8.97 71.98 0.65 -5.75 16 2 C 0.26 13.60 2.64 44.24 0.12 13.72 16 3 H 0.01 0.34 6.90 -2.38 -0.02 0.33 16 4 C -0.53 -29.00 7.99 25.60 0.20 -28.80 16 5 H 0.06 3.25 7.33 -2.91 -0.02 3.23 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -53.30 11.31 21.45 0.24 -53.06 16 8 Si 0.96 42.99 29.54 68.60 2.03 45.01 16 9 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 10 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 12 N -0.60 -24.81 2.75 -826.77 -2.28 -27.08 16 13 C 0.08 2.38 9.12 127.77 1.17 3.55 16 14 C 0.51 20.26 6.92 87.66 0.61 20.87 16 15 O -0.61 -30.53 15.16 -3.04 -0.05 -30.57 16 16 C -0.13 -3.30 2.99 -11.02 -0.03 -3.33 16 17 C -0.10 -2.12 6.10 31.21 0.19 -1.93 16 18 C -0.08 -1.83 3.65 -10.92 -0.04 -1.87 16 19 C -0.08 -1.54 5.29 -19.86 -0.11 -1.65 16 20 C -0.08 -1.24 8.63 22.26 0.19 -1.05 16 21 C -0.15 -2.28 10.03 22.31 0.22 -2.05 16 22 C 0.07 1.35 7.30 22.38 0.16 1.51 16 23 F -0.15 -3.15 17.27 44.97 0.78 -2.37 16 24 C -0.16 -3.05 10.03 22.31 0.22 -2.82 16 25 C -0.10 -2.14 9.71 22.26 0.22 -1.93 16 26 C -0.10 -2.39 6.92 31.12 0.22 -2.17 16 27 H 0.07 3.59 6.06 -2.38 -0.01 3.58 16 28 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.05 2.08 7.67 -2.39 -0.02 2.06 16 30 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.09 2.07 5.84 -2.39 -0.01 2.06 16 33 H 0.07 2.17 7.02 -2.39 -0.02 2.15 16 34 H 0.13 2.42 7.91 -2.39 -0.02 2.40 16 35 H 0.06 1.51 7.87 -2.39 -0.02 1.49 16 36 H 0.14 1.61 6.31 -2.38 -0.02 1.59 16 37 H 0.07 2.15 8.09 -2.38 -0.02 2.13 16 38 H 0.16 1.43 6.65 -2.91 -0.02 1.41 16 39 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 41 H 0.13 2.70 8.05 -2.91 -0.02 2.68 16 42 H 0.12 1.93 7.73 -2.39 -0.02 1.91 16 43 H 0.05 1.63 7.42 -2.39 -0.02 1.61 16 Total: -1.00 -71.79 350.49 6.17 -65.62 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 1.01 Total: 14.97 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 4.43 Total: -12.52 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -2.03 Total: -80.14 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.05 Total: -30.57 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.78 Total: -2.37 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -71.79 6.17 -65.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590034115.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.685 kcal (2) G-P(sol) polarization free energy of solvation -71.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds