Wall clock time and date at job start Tue Mar 31 2020 08:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47218 * 2 1 4 4 H 1.08999 * 109.47494 * 305.00003 * 3 2 1 5 5 C 1.50700 * 109.46903 * 185.00069 * 3 2 1 6 6 H 1.08003 * 119.99670 * 239.99612 * 5 3 2 7 7 C 1.37878 * 120.00183 * 60.00029 * 5 3 2 8 8 N 1.31511 * 119.99924 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99758 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47117 * 60.00311 * 9 7 5 11 11 H 1.48506 * 109.46648 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47292 * 300.00103 * 9 7 5 13 13 N 1.46496 * 109.46900 * 65.00106 * 3 2 1 14 14 C 1.34776 * 119.99990 * 274.99417 * 13 3 2 15 15 O 1.21280 * 120.00071 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00154 * 179.97438 * 14 13 3 17 17 C 1.53780 * 113.61555 * 279.14531 * 16 14 13 18 18 C 1.53962 * 87.01608 * 220.04475 * 17 16 14 19 19 C 1.50699 * 113.66451 * 139.93060 * 18 17 16 20 20 C 1.38252 * 119.97542 * 322.16837 * 19 18 17 21 21 C 1.38203 * 120.02240 * 179.72796 * 20 19 18 22 22 C 1.38453 * 119.97268 * 0.56378 * 21 20 19 23 23 F 1.35110 * 120.02327 * 179.68336 * 22 21 20 24 24 C 1.38455 * 119.95164 * 359.70742 * 22 21 20 25 25 C 1.38193 * 119.97331 * 359.97438 * 24 22 21 26 26 C 1.53780 * 87.11158 * 25.36395 * 18 17 16 27 27 H 1.08998 * 109.47384 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47115 * 300.00241 * 1 2 3 29 29 H 1.09003 * 109.46959 * 59.99825 * 1 2 3 30 30 H 1.08998 * 109.47115 * 239.99759 * 2 1 3 31 31 H 1.09003 * 109.46959 * 120.00175 * 2 1 3 32 32 H 0.97000 * 120.00107 * 180.02562 * 8 7 5 33 33 H 0.97005 * 120.00034 * 95.00293 * 13 3 2 34 34 H 1.09002 * 112.84742 * 50.33903 * 16 14 13 35 35 H 1.09000 * 113.61461 * 334.56184 * 17 16 14 36 36 H 1.08995 * 113.61894 * 105.46921 * 17 16 14 37 37 H 1.08997 * 113.53543 * 270.80721 * 18 17 16 38 38 H 1.08001 * 119.98459 * 359.97438 * 20 19 18 39 39 H 1.08003 * 120.00476 * 180.25257 * 21 20 19 40 40 H 1.08000 * 120.00995 * 179.97438 * 24 22 21 41 41 H 1.08007 * 119.98822 * 179.97438 * 25 24 22 42 42 H 1.09005 * 113.61134 * 220.09229 * 26 18 17 43 43 H 1.09002 * 113.69315 * 89.19485 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8811 -1.3817 10 1 6.5975 0.1471 -0.2348 11 1 6.3978 0.2176 -2.6509 12 1 6.4995 2.2813 -1.3820 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6321 0.4344 16 6 0.0363 3.3377 2.6549 17 6 -0.4437 2.3583 3.7390 18 6 -1.5258 3.3975 4.0850 19 6 -2.8704 2.7909 4.3933 20 6 -3.3140 1.6945 3.6775 21 6 -4.5446 1.1339 3.9632 22 6 -5.3381 1.6780 4.9588 23 9 -6.5440 1.1347 5.2347 24 6 -4.8951 2.7795 5.6712 25 6 -3.6615 3.3342 5.3883 26 6 -1.3945 3.9012 2.6380 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.8293 -0.0611 -2.9499 33 1 2.2720 2.1231 1.9978 34 1 0.7818 4.0497 3.0089 35 1 -0.8448 1.4269 3.3394 36 1 0.2819 2.2000 4.5367 37 1 -1.2074 4.1252 4.8313 38 1 -2.6970 1.2734 2.8975 39 1 -4.8891 0.2749 3.4066 40 1 -5.5135 3.2049 6.4478 41 1 -3.3159 4.1937 5.9436 42 1 -1.4351 4.9868 2.5482 43 1 -2.0555 3.3932 1.9357 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590038167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:35 Heat of formation + Delta-G solvation = -53.312535 kcal Electronic energy + Delta-G solvation = -24631.421629 eV Core-core repulsion = 20976.955940 eV Total energy + Delta-G solvation = -3654.465690 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.03887 -40.48022 -38.91322 -37.14156 -34.91949 -32.35538 -31.35154 -31.19676 -30.60938 -27.28789 -25.73772 -25.62586 -23.40423 -23.08575 -22.27304 -20.33269 -19.39402 -19.08035 -17.97249 -17.30221 -16.44855 -16.03465 -15.74360 -15.63246 -15.14542 -15.09042 -14.52231 -14.33817 -14.03906 -13.73375 -13.36239 -13.11057 -13.05015 -12.69206 -12.41771 -12.26526 -11.98050 -11.73680 -11.41801 -11.38762 -11.23703 -11.00115 -10.85749 -10.77782 -10.60015 -10.45066 -10.32069 -10.13701 -9.63372 -9.28769 -9.05828 -8.85254 -8.64948 -8.49415 -7.79633 -6.12672 -4.22145 0.94837 1.05214 3.24478 3.30087 3.30738 3.34162 3.42693 4.07087 4.11522 4.35661 4.44338 4.56702 4.67883 4.71748 4.78219 4.88215 4.99194 5.09917 5.18415 5.19403 5.56274 5.65201 5.72581 5.75794 5.83430 5.85861 5.93213 5.99376 6.05298 6.10985 6.33696 6.37670 6.44200 6.54016 6.64895 6.71692 7.02595 7.19414 7.36781 7.48245 7.61887 7.74275 7.90868 8.18533 8.70654 8.78568 9.18016 9.45751 10.92560 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.029905 B = 0.002842 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.063760 B = 9851.262043 C =10389.430339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.707 5.707 14 C 0.509 3.491 15 O -0.549 6.549 16 C -0.140 4.140 17 C -0.115 4.115 18 C -0.076 4.076 19 C -0.074 4.074 20 C -0.083 4.083 21 C -0.149 4.149 22 C 0.088 3.912 23 F -0.144 7.144 24 C -0.155 4.155 25 C -0.089 4.089 26 C -0.104 4.104 27 H 0.021 0.979 28 H 0.038 0.962 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.265 0.735 33 H 0.387 0.613 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.071 0.929 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.717 4.788 15.775 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.354 5.354 14 C 0.294 3.706 15 O -0.429 6.429 16 C -0.162 4.162 17 C -0.153 4.153 18 C -0.095 4.095 19 C -0.075 4.075 20 C -0.101 4.101 21 C -0.168 4.168 22 C 0.068 3.932 23 F -0.123 7.123 24 C -0.173 4.173 25 C -0.107 4.107 26 C -0.142 4.142 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.219 0.781 34 H 0.126 0.874 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.090 0.910 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.278 4.628 14.890 19.846 hybrid contribution 1.134 -0.156 0.307 1.185 sum -11.144 4.472 15.198 19.369 Atomic orbital electron populations 1.21835 0.98430 0.97912 1.01182 1.21926 0.92555 0.99915 1.02200 1.18751 0.94078 0.89144 0.81196 0.93434 1.21207 0.90824 1.39035 1.06244 0.92209 1.24885 0.98543 0.94837 0.95403 1.69881 1.35199 1.37568 1.09335 0.86532 0.84955 0.78297 0.77447 1.20177 1.21141 1.20212 1.46499 1.14699 1.55917 1.18306 1.20146 0.82622 0.79279 0.88589 1.90655 1.51571 1.60227 1.40405 1.22756 0.98687 0.99442 0.95279 1.23015 0.97464 0.97284 0.97497 1.21594 0.91216 0.98392 0.98263 1.19837 0.96250 0.95679 0.95686 1.21035 0.94979 0.95149 0.98939 1.21179 0.95319 1.01935 0.98370 1.17740 0.82044 0.95213 0.98160 1.91490 1.42481 1.85209 1.93082 1.21098 0.98005 0.96657 1.01585 1.20910 0.93144 0.99541 0.97152 1.22894 0.95491 1.01061 0.94724 0.95959 0.94305 0.93190 0.88390 0.95116 0.92520 0.78056 0.87438 0.89267 0.90528 0.88128 0.84538 0.84732 0.84981 0.85097 0.91046 0.88378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.51 37.16 0.32 -2.64 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.64 2.24 -69.08 -0.15 6.49 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -13.90 8.73 -34.44 -0.30 -14.20 16 6 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.54 11.29 55.43 0.63 -23.91 16 9 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.71 -14.00 5.02 -54.93 -0.28 -14.28 16 14 C 0.51 9.39 5.92 -10.98 -0.07 9.32 16 15 O -0.55 -12.14 13.05 5.56 0.07 -12.07 16 16 C -0.14 -1.82 4.14 -90.96 -0.38 -2.19 16 17 C -0.11 -1.26 7.02 -25.82 -0.18 -1.44 16 18 C -0.08 -0.74 3.98 -90.87 -0.36 -1.10 16 19 C -0.07 -0.75 5.29 -104.62 -0.55 -1.31 16 20 C -0.08 -0.92 8.60 -39.59 -0.34 -1.26 16 21 C -0.15 -1.61 10.03 -39.51 -0.40 -2.01 16 22 C 0.09 0.95 7.30 -39.42 -0.29 0.66 16 23 F -0.14 -1.66 17.27 2.25 0.04 -1.62 16 24 C -0.15 -1.44 10.03 -39.52 -0.40 -1.84 16 25 C -0.09 -0.79 9.71 -39.60 -0.38 -1.18 16 26 C -0.10 -1.24 6.86 -25.92 -0.18 -1.42 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.79 5.64 -51.93 -0.29 0.50 16 29 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 30 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.39 6.69 8.54 -40.82 -0.35 6.34 16 34 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.09 1.09 6.29 -51.93 -0.33 0.76 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.78 8.09 -51.93 -0.42 0.36 16 38 H 0.14 1.57 6.68 -52.49 -0.35 1.22 16 39 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 40 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.10 1.39 7.02 -51.93 -0.36 1.02 16 LS Contribution 351.16 15.07 5.29 5.29 Total: -1.00 -29.63 351.16 -9.30 -38.93 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.14 Total: 7.88 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -3.90 Total: -15.61 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.35 Total: -38.19 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.07 Total: -12.07 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.63 -9.30 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590038167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.381 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds