Wall clock time and date at job start Tue Mar 31 2020 08:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47251 * 2 1 4 4 N 1.46506 * 109.46765 * 119.99790 * 2 1 3 5 5 C 1.46496 * 120.00245 * 305.10233 * 4 2 1 6 6 C 1.50700 * 109.47182 * 270.00421 * 5 4 2 7 7 H 1.08001 * 120.00231 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99743 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00422 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99814 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47049 * 90.00329 * 10 8 6 12 12 H 1.48503 * 109.47134 * 209.99629 * 10 8 6 13 13 H 1.48495 * 109.47224 * 330.00074 * 10 8 6 14 14 C 1.34777 * 119.99757 * 125.10870 * 4 2 1 15 15 O 1.21280 * 120.00135 * 185.45221 * 14 4 2 16 16 C 1.50707 * 119.99985 * 5.44639 * 14 4 2 17 17 H 1.08995 * 110.26654 * 27.45035 * 16 14 4 18 18 C 1.54338 * 110.30136 * 265.37567 * 16 14 4 19 19 C 1.54344 * 102.39449 * 267.33338 * 18 16 14 20 20 C 1.51378 * 105.17192 * 333.65029 * 19 18 16 21 21 C 1.38457 * 130.36953 * 197.16372 * 20 19 18 22 22 C 1.38324 * 120.19804 * 180.02562 * 21 20 19 23 23 F 1.35105 * 120.06540 * 180.02562 * 22 21 20 24 24 C 1.38472 * 119.88006 * 0.02562 * 22 21 20 25 25 C 1.38065 * 119.91022 * 0.02562 * 24 22 21 26 26 C 1.38237 * 109.75660 * 17.44220 * 20 19 18 27 27 H 1.09008 * 109.47102 * 300.00017 * 1 2 3 28 28 H 1.09002 * 109.46860 * 59.99987 * 1 2 3 29 29 H 1.08998 * 109.47646 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47263 * 239.99973 * 2 1 3 31 31 H 1.08997 * 109.46971 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.46852 * 299.99870 * 3 2 1 33 33 H 1.08998 * 109.47009 * 59.99817 * 3 2 1 34 34 H 1.08997 * 109.47188 * 30.00034 * 5 4 2 35 35 H 1.09003 * 109.47232 * 150.00223 * 5 4 2 36 36 H 0.96998 * 120.00552 * 180.02562 * 9 8 6 37 37 H 1.09000 * 110.81966 * 149.11250 * 18 16 14 38 38 H 1.08991 * 110.99640 * 25.63928 * 18 16 14 39 39 H 1.09002 * 110.30492 * 214.72977 * 19 18 16 40 40 H 1.09001 * 110.30636 * 92.57639 * 19 18 16 41 41 H 1.07998 * 119.90369 * 0.02562 * 21 20 19 42 42 H 1.08007 * 120.04856 * 180.02562 * 24 22 21 43 43 H 1.07999 * 119.88108 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.5745 -0.2586 2.5239 6 6 2.5183 0.7909 3.0521 7 1 3.3643 1.1044 2.4584 8 6 2.3023 1.3501 4.2937 9 7 1.2725 0.9680 5.0169 10 14 3.4725 2.6504 4.9488 11 1 2.9990 3.9959 4.5354 12 1 3.5165 2.5752 6.4313 13 1 4.8322 2.4141 4.4005 14 6 2.8757 -1.7233 1.0753 15 8 3.2029 -2.3579 2.0557 16 6 3.4279 -2.0897 -0.2782 17 1 3.4543 -1.2129 -0.9252 18 6 2.5750 -3.2040 -0.9208 19 6 3.3122 -4.4845 -0.4747 20 6 4.7476 -4.0581 -0.2523 21 6 5.9032 -4.8146 -0.1559 22 6 7.1234 -4.1975 0.0528 23 9 8.2494 -4.9383 0.1459 24 6 7.1888 -2.8190 0.1663 25 6 6.0362 -2.0649 0.0712 26 6 4.8134 -2.6824 -0.1337 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.5700 0.1586 2.4534 35 1 1.5663 -1.1134 3.2003 36 1 1.1203 1.3616 5.8903 37 1 2.5761 -3.1149 -2.0072 38 1 1.5563 -3.1885 -0.5335 39 1 3.2597 -5.2428 -1.2559 40 1 2.8827 -4.8648 0.4521 41 1 5.8518 -5.8898 -0.2441 42 1 8.1402 -2.3343 0.3289 43 1 6.0878 -0.9898 0.1602 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597042959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:27 Heat of formation + Delta-G solvation = -60.369025 kcal Electronic energy + Delta-G solvation = -25650.001196 eV Core-core repulsion = 21995.229514 eV Total energy + Delta-G solvation = -3654.771682 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.83995 -40.58792 -38.58622 -35.99682 -35.14536 -32.83500 -31.49958 -30.82566 -28.84434 -28.35046 -26.83613 -26.57534 -23.24399 -22.94508 -21.73013 -21.09840 -20.70940 -18.09245 -17.16265 -16.88502 -16.45793 -16.38397 -15.73180 -15.53490 -14.88652 -14.74032 -14.33629 -14.03366 -13.80376 -13.56462 -13.47327 -13.08419 -12.84124 -12.60451 -12.34926 -12.18572 -11.94501 -11.78023 -11.59866 -11.56146 -11.23380 -11.12429 -11.03739 -10.94734 -10.84048 -10.76228 -10.51753 -10.36948 -10.02049 -9.55302 -8.99525 -8.85023 -8.42548 -8.26526 -7.64439 -6.04158 -4.07575 1.21097 1.30380 3.28460 3.32603 3.36486 3.41195 3.57117 3.96037 4.13885 4.42946 4.45363 4.57834 4.90830 4.94276 5.04045 5.12129 5.21665 5.27944 5.30253 5.37021 5.52585 5.58242 5.61689 5.71092 5.75658 5.81733 5.95640 5.99682 6.07118 6.09851 6.16475 6.19127 6.25592 6.33296 6.33848 6.58010 6.62843 6.91932 6.95552 7.12422 7.47722 7.56909 7.92932 8.24998 8.43945 8.90926 9.09993 9.56740 11.03931 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013973 B = 0.004798 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.378585 B = 5834.418198 C = 6982.849752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 C -0.160 4.160 4 N -0.591 5.591 5 C 0.245 3.755 6 C -0.520 4.520 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.893 3.107 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.517 3.483 15 O -0.533 6.533 16 C -0.077 4.077 17 H 0.100 0.900 18 C -0.105 4.105 19 C -0.079 4.079 20 C -0.054 4.054 21 C -0.146 4.146 22 C 0.095 3.905 23 F -0.143 7.143 24 C -0.154 4.154 25 C -0.067 4.067 26 C -0.076 4.076 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.081 0.919 34 H 0.035 0.965 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.227 -6.541 -16.032 17.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 C -0.218 4.218 4 N -0.323 5.323 5 C 0.126 3.874 6 C -0.559 4.559 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.721 3.279 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.302 3.698 15 O -0.410 6.410 16 C -0.099 4.099 17 H 0.118 0.882 18 C -0.143 4.143 19 C -0.116 4.116 20 C -0.054 4.054 21 C -0.164 4.164 22 C 0.076 3.924 23 F -0.122 7.122 24 C -0.173 4.173 25 C -0.085 4.085 26 C -0.076 4.076 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.149 0.851 42 H 0.153 0.847 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.327 -6.863 -15.296 17.093 hybrid contribution 0.933 0.812 0.604 1.377 sum 4.260 -6.051 -14.692 16.451 Atomic orbital electron populations 1.22141 0.95347 1.01852 1.02556 1.21044 0.94325 0.93946 0.88045 1.22186 1.01148 0.96025 1.02472 1.48317 1.44548 1.30716 1.08745 1.19263 0.95182 0.95754 0.77226 1.21433 1.11198 1.21224 1.02008 0.92419 1.24917 0.95501 0.97130 0.96545 1.69924 1.28428 1.43004 1.12027 0.86570 0.81429 0.81661 0.78211 1.20671 1.21162 1.19967 1.19941 0.79702 0.80830 0.89289 1.90679 1.59028 1.51821 1.39456 1.20935 0.92037 0.99860 0.97034 0.88187 1.22232 0.98983 0.92714 1.00394 1.21067 0.90251 0.98005 1.02311 1.20322 0.94615 0.93650 0.96841 1.20421 0.90426 1.00448 1.05151 1.17454 0.82150 0.89264 1.03543 1.91475 1.49857 1.76988 1.93891 1.20944 0.99822 0.91919 1.04634 1.20481 0.90509 1.00352 0.97176 1.20120 0.93541 0.94145 0.99810 0.91102 0.92269 0.92872 0.90619 0.92952 0.93213 0.89966 0.94674 0.94023 0.92792 0.90034 0.89908 0.90373 0.89224 0.85132 0.84712 0.85164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.07 37.16 0.34 -1.92 16 2 C 0.13 2.01 2.99 -67.93 -0.20 1.81 16 3 C -0.16 -2.50 8.61 37.16 0.32 -2.18 16 4 N -0.59 -11.89 2.39 -167.47 -0.40 -12.29 16 5 C 0.24 6.16 4.77 -5.20 -0.02 6.13 16 6 C -0.52 -14.16 7.85 -34.44 -0.27 -14.43 16 7 H 0.06 1.57 7.59 -52.49 -0.40 1.17 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 10 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 14 C 0.52 10.39 6.63 -10.98 -0.07 10.31 16 15 O -0.53 -13.25 15.95 5.56 0.09 -13.16 16 16 C -0.08 -1.14 2.35 -91.88 -0.22 -1.36 16 17 H 0.10 1.28 6.30 -51.93 -0.33 0.96 16 18 C -0.11 -1.22 6.49 -25.33 -0.16 -1.39 16 19 C -0.08 -0.96 6.76 -26.85 -0.18 -1.14 16 20 C -0.05 -0.77 6.13 -104.21 -0.64 -1.41 16 21 C -0.15 -1.97 10.02 -39.47 -0.40 -2.37 16 22 C 0.10 1.34 7.30 -39.46 -0.29 1.05 16 23 F -0.14 -2.00 17.27 2.25 0.04 -1.96 16 24 C -0.15 -2.13 10.03 -39.56 -0.40 -2.53 16 25 C -0.07 -0.99 10.04 -39.54 -0.40 -1.39 16 26 C -0.08 -1.16 4.92 -104.19 -0.51 -1.67 16 27 H 0.07 1.16 6.52 -51.92 -0.34 0.82 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.95 5.44 -51.93 -0.28 0.67 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.54 6.93 -51.93 -0.36 1.18 16 34 H 0.04 0.89 6.17 -51.93 -0.32 0.57 16 35 H 0.04 1.21 7.35 -51.93 -0.38 0.83 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.97 7.90 -51.93 -0.41 0.56 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 42 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 43 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 352.85 15.07 5.32 5.32 Total: -1.00 -32.38 352.85 -8.62 -41.00 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.18 Total: 0.81 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -3.20 Total: -10.85 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.34 Total: -37.75 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.09 Total: -13.16 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.38 -8.62 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597042959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.367 kcal (2) G-P(sol) polarization free energy of solvation -32.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds