Wall clock time and date at job start Tue Mar 31 2020 08:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47251 * 2 1 4 4 N 1.46506 * 109.46765 * 119.99790 * 2 1 3 5 5 C 1.46496 * 120.00245 * 305.10233 * 4 2 1 6 6 C 1.50700 * 109.47182 * 270.00421 * 5 4 2 7 7 H 1.08001 * 120.00231 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99743 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00422 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99814 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47049 * 90.00329 * 10 8 6 12 12 H 1.48503 * 109.47134 * 209.99629 * 10 8 6 13 13 H 1.48495 * 109.47224 * 330.00074 * 10 8 6 14 14 C 1.34777 * 119.99757 * 125.10870 * 4 2 1 15 15 O 1.21280 * 120.00135 * 185.45221 * 14 4 2 16 16 C 1.50707 * 119.99985 * 5.44639 * 14 4 2 17 17 H 1.08995 * 110.26654 * 27.45035 * 16 14 4 18 18 C 1.54338 * 110.30136 * 265.37567 * 16 14 4 19 19 C 1.54344 * 102.39449 * 267.33338 * 18 16 14 20 20 C 1.51378 * 105.17192 * 333.65029 * 19 18 16 21 21 C 1.38457 * 130.36953 * 197.16372 * 20 19 18 22 22 C 1.38324 * 120.19804 * 180.02562 * 21 20 19 23 23 F 1.35105 * 120.06540 * 180.02562 * 22 21 20 24 24 C 1.38472 * 119.88006 * 0.02562 * 22 21 20 25 25 C 1.38065 * 119.91022 * 0.02562 * 24 22 21 26 26 C 1.38237 * 109.75660 * 17.44220 * 20 19 18 27 27 H 1.09008 * 109.47102 * 300.00017 * 1 2 3 28 28 H 1.09002 * 109.46860 * 59.99987 * 1 2 3 29 29 H 1.08998 * 109.47646 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47263 * 239.99973 * 2 1 3 31 31 H 1.08997 * 109.46971 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.46852 * 299.99870 * 3 2 1 33 33 H 1.08998 * 109.47009 * 59.99817 * 3 2 1 34 34 H 1.08997 * 109.47188 * 30.00034 * 5 4 2 35 35 H 1.09003 * 109.47232 * 150.00223 * 5 4 2 36 36 H 0.96998 * 120.00552 * 180.02562 * 9 8 6 37 37 H 1.09000 * 110.81966 * 149.11250 * 18 16 14 38 38 H 1.08991 * 110.99640 * 25.63928 * 18 16 14 39 39 H 1.09002 * 110.30492 * 214.72977 * 19 18 16 40 40 H 1.09001 * 110.30636 * 92.57639 * 19 18 16 41 41 H 1.07998 * 119.90369 * 0.02562 * 21 20 19 42 42 H 1.08007 * 120.04856 * 180.02562 * 24 22 21 43 43 H 1.07999 * 119.88108 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.5745 -0.2586 2.5239 6 6 2.5183 0.7909 3.0521 7 1 3.3643 1.1044 2.4584 8 6 2.3023 1.3501 4.2937 9 7 1.2725 0.9680 5.0169 10 14 3.4725 2.6504 4.9488 11 1 2.9990 3.9959 4.5354 12 1 3.5165 2.5752 6.4313 13 1 4.8322 2.4141 4.4005 14 6 2.8757 -1.7233 1.0753 15 8 3.2029 -2.3579 2.0557 16 6 3.4279 -2.0897 -0.2782 17 1 3.4543 -1.2129 -0.9252 18 6 2.5750 -3.2040 -0.9208 19 6 3.3122 -4.4845 -0.4747 20 6 4.7476 -4.0581 -0.2523 21 6 5.9032 -4.8146 -0.1559 22 6 7.1234 -4.1975 0.0528 23 9 8.2494 -4.9383 0.1459 24 6 7.1888 -2.8190 0.1663 25 6 6.0362 -2.0649 0.0712 26 6 4.8134 -2.6824 -0.1337 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.5700 0.1586 2.4534 35 1 1.5663 -1.1134 3.2003 36 1 1.1203 1.3616 5.8903 37 1 2.5761 -3.1149 -2.0072 38 1 1.5563 -3.1885 -0.5335 39 1 3.2597 -5.2428 -1.2559 40 1 2.8827 -4.8648 0.4521 41 1 5.8518 -5.8898 -0.2441 42 1 8.1402 -2.3343 0.3289 43 1 6.0878 -0.9898 0.1602 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597042959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:27 Heat of formation + Delta-G solvation = -78.073549 kcal Electronic energy + Delta-G solvation = -25650.768921 eV Core-core repulsion = 21995.229514 eV Total energy + Delta-G solvation = -3655.539408 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.92883 -41.82117 -39.96959 -37.51490 -36.29030 -34.89140 -32.60688 -32.37610 -30.12487 -29.65856 -28.28283 -27.89799 -25.06938 -24.02534 -23.10954 -22.17550 -21.95052 -19.51346 -18.59716 -18.46030 -18.00698 -17.54158 -17.10588 -16.63811 -16.56819 -16.00293 -15.75325 -15.47123 -15.07200 -14.83341 -14.61026 -14.44185 -14.24420 -13.88306 -13.86773 -13.39354 -13.30274 -13.20666 -12.93014 -12.82940 -12.77219 -12.60564 -12.47717 -12.23929 -12.13155 -12.06249 -12.05259 -11.81657 -11.60737 -11.45643 -10.59929 -10.53566 -9.91567 -9.44983 -9.35239 -8.19113 -6.30746 0.09802 0.23926 1.34620 1.37495 1.46774 1.83218 2.27257 2.40424 2.65742 3.08048 3.10807 3.36753 3.51160 3.76632 3.92227 3.98853 4.01554 4.14967 4.25461 4.28766 4.33471 4.44552 4.61404 4.68114 4.78569 4.86087 4.87563 4.90712 5.00143 5.05129 5.06479 5.09562 5.10513 5.16464 5.20513 5.27560 5.30913 5.47177 5.54738 5.60626 5.66368 5.89528 5.92335 6.12811 6.75915 6.87427 7.32771 7.53934 8.88034 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013973 B = 0.004798 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.378585 B = 5834.418198 C = 6982.849752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 C -0.156 4.156 4 N -0.595 5.595 5 C 0.263 3.737 6 C -0.524 4.524 7 H 0.054 0.946 8 C 0.007 3.993 9 N -0.930 5.930 10 Si 0.958 3.042 11 H -0.263 1.263 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.509 3.491 15 O -0.593 6.593 16 C -0.067 4.067 17 H 0.125 0.875 18 C -0.099 4.099 19 C -0.080 4.080 20 C -0.061 4.061 21 C -0.149 4.149 22 C 0.085 3.915 23 F -0.144 7.144 24 C -0.159 4.159 25 C -0.083 4.083 26 C -0.100 4.100 27 H 0.036 0.964 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.118 0.882 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.042 0.958 34 H 0.028 0.972 35 H -0.010 1.010 36 H 0.264 0.736 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.114 0.886 40 H 0.068 0.932 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.654 -6.269 -19.082 20.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.021 3.979 3 C -0.214 4.214 4 N -0.325 5.325 5 C 0.141 3.859 6 C -0.563 4.563 7 H 0.072 0.928 8 C -0.192 4.192 9 N -0.571 5.571 10 Si 0.783 3.217 11 H -0.188 1.188 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.298 3.702 15 O -0.474 6.474 16 C -0.088 4.088 17 H 0.143 0.857 18 C -0.136 4.136 19 C -0.117 4.117 20 C -0.061 4.061 21 C -0.167 4.167 22 C 0.066 3.934 23 F -0.123 7.123 24 C -0.178 4.178 25 C -0.101 4.101 26 C -0.100 4.100 27 H 0.056 0.944 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.136 0.864 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.061 0.939 34 H 0.045 0.955 35 H 0.008 0.992 36 H 0.073 0.927 37 H 0.143 0.857 38 H 0.099 0.901 39 H 0.132 0.868 40 H 0.087 0.913 41 H 0.170 0.830 42 H 0.170 0.830 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.742 -6.571 -18.400 19.894 hybrid contribution 0.806 0.688 1.548 1.876 sum 4.548 -5.883 -16.852 18.420 Atomic orbital electron populations 1.22110 0.94189 1.02311 1.02779 1.21477 0.95337 0.93885 0.87241 1.22135 1.00674 0.96053 1.02541 1.48345 1.44653 1.31184 1.08361 1.18657 0.94723 0.93090 0.79383 1.21667 1.11126 1.21319 1.02185 0.92759 1.25773 0.97093 0.99353 0.96935 1.70049 1.30157 1.44414 1.12434 0.85558 0.79154 0.79651 0.77338 1.18848 1.21093 1.19867 1.20971 0.78619 0.79665 0.90993 1.90642 1.60903 1.53749 1.42111 1.20947 0.92135 1.02061 0.93703 0.85688 1.22360 0.97974 0.90711 1.02591 1.21138 0.88689 0.99272 1.02559 1.20640 0.95789 0.93361 0.96335 1.20700 0.90038 1.01663 1.04346 1.17640 0.82463 0.89526 1.03796 1.91471 1.49905 1.76973 1.93923 1.21164 1.00412 0.92037 1.04155 1.20677 0.90946 1.00819 0.97632 1.20367 0.93802 0.95042 1.00804 0.94449 0.88362 0.92348 0.86417 0.93636 0.89102 0.93854 0.95460 0.99188 0.92690 0.85728 0.90074 0.86800 0.91322 0.82980 0.82974 0.84814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 9.07 71.98 0.65 -3.42 16 2 C 0.12 3.54 2.99 44.99 0.13 3.68 16 3 C -0.16 -4.58 8.61 71.98 0.62 -3.96 16 4 N -0.59 -24.21 2.39 -802.13 -1.92 -26.13 16 5 C 0.26 13.92 4.77 85.63 0.41 14.33 16 6 C -0.52 -29.57 7.85 25.60 0.20 -29.37 16 7 H 0.05 3.03 7.59 -2.91 -0.02 3.00 16 8 C 0.01 0.39 5.46 84.65 0.46 0.86 16 9 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16 10 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 11 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 12 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 13 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 14 C 0.51 20.64 6.63 87.66 0.58 21.22 16 15 O -0.59 -30.82 15.95 -3.03 -0.05 -30.87 16 16 C -0.07 -1.86 2.35 -11.61 -0.03 -1.89 16 17 H 0.13 2.75 6.30 -2.39 -0.02 2.73 16 18 C -0.10 -1.96 6.49 31.50 0.20 -1.76 16 19 C -0.08 -1.74 6.76 30.52 0.21 -1.53 16 20 C -0.06 -1.63 6.13 -19.60 -0.12 -1.75 16 21 C -0.15 -3.80 10.02 22.34 0.22 -3.58 16 22 C 0.08 2.30 7.30 22.35 0.16 2.47 16 23 F -0.14 -3.86 17.27 44.97 0.78 -3.08 16 24 C -0.16 -4.26 10.03 22.28 0.22 -4.04 16 25 C -0.08 -2.39 10.04 22.29 0.22 -2.17 16 26 C -0.10 -2.94 4.92 -19.58 -0.10 -3.03 16 27 H 0.04 1.22 6.52 -2.38 -0.02 1.21 16 28 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.12 2.44 5.44 -2.39 -0.01 2.43 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.04 1.61 6.93 -2.39 -0.02 1.59 16 34 H 0.03 1.48 6.17 -2.39 -0.01 1.46 16 35 H -0.01 -0.63 7.35 -2.39 -0.02 -0.65 16 36 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.67 7.90 -2.39 -0.02 1.65 16 39 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 42 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 43 H 0.13 3.63 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -75.68 352.85 6.20 -69.49 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 1.01 Total: 13.58 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 4.06 Total: -13.95 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -1.63 Total: -82.27 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.05 Total: -30.87 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.78 Total: -3.08 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -75.68 6.20 -69.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597042959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.587 kcal (2) G-P(sol) polarization free energy of solvation -75.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds