Wall clock time and date at job start Tue Mar 31 2020 08:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50708 * 119.99868 * 2 1 4 4 N 1.46904 * 109.46618 * 125.30908 * 3 2 1 5 5 C 1.46900 * 110.99886 * 301.20375 * 4 3 2 6 6 C 1.50709 * 109.46936 * 288.00630 * 5 4 3 7 7 H 1.07996 * 119.99924 * 3.33337 * 6 5 4 8 8 C 1.37878 * 119.99776 * 183.32683 * 6 5 4 9 9 N 1.31522 * 120.00163 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99837 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47047 * 90.00100 * 10 8 6 12 12 H 1.48501 * 109.46868 * 210.00294 * 10 8 6 13 13 H 1.48501 * 109.47184 * 330.00027 * 10 8 6 14 14 C 1.46894 * 111.00194 * 65.15608 * 4 3 2 15 15 C 1.50710 * 109.47117 * 66.04510 * 14 4 3 16 16 C 1.38299 * 119.98439 * 259.97873 * 15 14 4 17 17 C 1.38218 * 120.12525 * 179.97438 * 16 15 14 18 18 C 1.38222 * 120.09382 * 0.04296 * 17 16 15 19 19 C 1.38622 * 119.97277 * 359.97438 * 18 17 16 20 20 O 1.35951 * 120.06706 * 179.97438 * 19 18 17 21 21 C 1.42911 * 116.99761 * 357.56304 * 20 19 18 22 22 C 1.52998 * 117.49655 * 226.17067 * 21 20 19 23 23 C 1.52996 * 117.49502 * 157.51226 * 21 20 19 24 24 C 1.38291 * 119.98062 * 79.99848 * 15 14 4 25 25 F 1.35098 * 120.05242 * 0.02562 * 24 15 14 26 26 H 1.07996 * 119.99405 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.99914 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.00429 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.46704 * 5.31157 * 3 2 1 30 30 H 1.08999 * 109.47238 * 245.30624 * 3 2 1 31 31 H 1.08997 * 109.47424 * 48.00574 * 5 4 3 32 32 H 1.09001 * 109.47285 * 168.01384 * 5 4 3 33 33 H 0.97000 * 119.99895 * 179.97438 * 9 8 6 34 34 H 1.08997 * 109.47629 * 306.04737 * 14 4 3 35 35 H 1.09003 * 109.47119 * 186.03970 * 14 4 3 36 36 H 1.07998 * 119.93810 * 359.97438 * 16 15 14 37 37 H 1.08001 * 119.95017 * 180.02562 * 17 16 15 38 38 H 1.08005 * 120.01612 * 180.25596 * 18 17 16 39 39 H 1.08996 * 115.54610 * 11.84055 * 21 20 19 40 40 H 1.08997 * 117.50330 * 0.02562 * 22 21 20 41 41 H 1.09004 * 117.49905 * 145.01837 * 22 21 20 42 42 H 1.09000 * 117.49500 * 214.97759 * 23 21 20 43 43 H 1.08995 * 117.50355 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0016 1.3289 1.1303 5 6 2.2923 1.1674 2.4065 6 6 1.5252 2.4268 2.7177 7 1 1.5173 3.2429 2.0105 8 6 0.8334 2.5369 3.9053 9 7 0.8433 1.5431 4.7667 10 14 -0.1180 4.0975 4.2907 11 1 -1.5068 3.9693 3.7809 12 1 -0.1476 4.3089 5.7603 13 1 0.5442 5.2551 3.6374 14 6 4.0418 0.3037 0.9728 15 6 4.9042 0.6416 -0.2161 16 6 4.6952 0.0036 -1.4252 17 6 5.4841 0.3116 -2.5176 18 6 6.4852 1.2579 -2.4047 19 6 6.6984 1.8995 -1.1945 20 8 7.6830 2.8302 -1.0812 21 6 8.4950 3.0593 -2.2346 22 6 10.0100 3.1236 -2.0305 23 6 9.2228 4.4016 -2.3308 24 6 5.9044 1.5891 -0.0973 25 9 6.1095 2.2119 1.0840 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 1.3590 2.1314 0.0951 30 1 2.6170 1.4052 -0.9337 31 1 1.5998 0.3288 2.3338 32 1 3.0133 0.9755 3.2012 33 1 0.3569 1.6207 5.6023 34 1 3.5735 -0.6682 0.8173 35 1 4.6583 0.2706 1.8711 36 1 3.9141 -0.7367 -1.5161 37 1 5.3181 -0.1880 -3.4606 38 1 7.0982 1.5006 -3.2601 39 1 8.1303 2.6169 -3.1616 40 1 10.3873 2.9907 -1.0166 41 1 10.6421 2.7238 -2.8235 42 1 9.3374 4.8421 -3.3212 43 1 9.0820 5.1101 -1.5146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597130603.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:07 Heat of formation + Delta-G solvation = 9.678726 kcal Electronic energy + Delta-G solvation = -24878.164178 eV Core-core repulsion = 21226.429995 eV Total energy + Delta-G solvation = -3651.734184 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.34600 -40.16734 -38.49644 -36.96885 -35.40210 -32.79439 -32.53587 -30.75580 -29.67610 -27.21280 -26.31284 -24.26185 -23.16085 -22.75748 -22.39799 -21.00178 -20.55864 -19.00861 -18.21246 -16.99814 -16.72818 -16.18381 -15.73826 -15.27808 -15.07395 -14.92191 -14.60857 -14.45061 -14.27089 -14.14838 -13.79966 -13.70947 -12.92188 -12.78034 -12.23801 -12.10217 -11.91057 -11.84690 -11.80615 -11.27533 -11.18192 -11.00913 -10.89981 -10.75021 -10.69823 -10.56885 -10.43758 -10.25301 -9.84891 -9.21872 -8.78809 -8.58028 -8.35276 -8.06360 -7.22585 -5.96033 -3.95994 1.21553 1.32407 2.79875 2.87880 3.35860 3.41467 3.42152 3.47363 3.67810 4.22170 4.48591 4.48915 4.57054 4.65147 4.79779 4.87154 4.99337 5.15224 5.29155 5.31266 5.32739 5.40904 5.45247 5.52457 5.59684 5.69936 5.78362 5.88628 6.05052 6.07051 6.18516 6.23916 6.32876 6.41371 6.49954 6.66680 6.75479 7.14560 7.28265 7.32250 7.33106 7.43526 7.85390 8.12765 8.23738 8.57795 9.10264 9.67013 11.14842 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016222 B = 0.003764 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.641146 B = 7437.541294 C = 8516.374557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.179 4.179 3 C 0.087 3.913 4 N -0.521 5.521 5 C 0.192 3.808 6 C -0.498 4.498 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.087 3.913 15 C -0.061 4.061 16 C -0.124 4.124 17 C -0.094 4.094 18 C -0.192 4.192 19 C 0.092 3.908 20 O -0.276 6.276 21 C 0.001 3.999 22 C -0.185 4.185 23 C -0.170 4.170 24 C 0.096 3.904 25 F -0.121 7.121 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.001 0.999 32 H 0.029 0.971 33 H 0.260 0.740 34 H 0.044 0.956 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.370 -2.435 -17.700 22.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.199 4.199 3 C -0.041 4.041 4 N -0.243 5.243 5 C 0.067 3.933 6 C -0.537 4.537 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.041 4.041 15 C -0.062 4.062 16 C -0.143 4.143 17 C -0.113 4.113 18 C -0.211 4.211 19 C 0.046 3.954 20 O -0.189 6.189 21 C -0.056 4.056 22 C -0.222 4.222 23 C -0.207 4.207 24 C 0.075 3.925 25 F -0.099 7.099 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.019 0.981 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.152 0.848 39 H 0.143 0.857 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 13.606 -1.855 -17.253 22.050 hybrid contribution -0.920 0.009 0.402 1.004 sum 12.686 -1.846 -16.851 21.173 Atomic orbital electron populations 1.23692 0.96034 1.01133 1.00926 1.23533 0.96698 0.99736 0.99919 1.21299 0.94482 0.94388 0.93939 1.62474 1.12936 1.44547 1.04369 1.19793 0.92637 0.96888 0.83942 1.21103 1.28712 1.00956 1.02951 0.92061 1.24950 0.96914 0.96502 0.96188 1.69958 1.43041 1.31445 1.09529 0.86541 0.80082 0.83716 0.77356 1.20834 1.21321 1.19795 1.21008 0.93890 0.94576 0.94609 1.19949 0.94493 0.94708 0.97074 1.20903 1.00488 1.01286 0.91604 1.20875 0.94663 0.96962 0.98761 1.20991 1.02662 1.01159 0.96262 1.18930 0.90602 0.92038 0.93820 1.86105 1.42343 1.54477 1.36000 1.23050 0.90068 1.02707 0.89746 1.23482 0.93360 1.01308 1.04055 1.23365 1.01962 0.91369 1.04018 1.16768 0.97868 0.97037 0.80803 1.91540 1.94092 1.80647 1.43608 0.89667 0.88500 0.88638 0.89865 0.91876 0.98099 0.95275 0.93050 0.93840 0.89977 0.85189 0.85406 0.84815 0.85687 0.87766 0.87780 0.87530 0.87626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 14.32 29.01 0.42 -2.68 16 2 C -0.18 -3.16 7.41 -36.02 -0.27 -3.43 16 3 C 0.09 1.68 5.44 -4.97 -0.03 1.65 16 4 N -0.52 -11.35 4.65 -238.95 -1.11 -12.46 16 5 C 0.19 5.02 4.58 -4.97 -0.02 4.99 16 6 C -0.50 -14.19 8.66 -34.44 -0.30 -14.49 16 7 H 0.06 1.75 7.39 -52.49 -0.39 1.36 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 10 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.09 1.61 4.66 -4.97 -0.02 1.59 16 15 C -0.06 -0.98 4.59 -104.57 -0.48 -1.46 16 16 C -0.12 -1.61 8.59 -39.57 -0.34 -1.95 16 17 C -0.09 -1.04 10.04 -39.59 -0.40 -1.43 16 18 C -0.19 -2.22 9.17 -39.45 -0.36 -2.58 16 19 C 0.09 1.36 6.69 -39.17 -0.26 1.10 16 20 O -0.28 -4.02 10.26 -19.59 -0.20 -4.22 16 21 C 0.00 0.01 6.18 -26.73 -0.17 -0.16 16 22 C -0.18 -1.49 10.48 -26.69 -0.28 -1.77 16 23 C -0.17 -1.40 10.48 -26.70 -0.28 -1.68 16 24 C 0.10 1.66 7.25 -39.30 -0.29 1.37 16 25 F -0.12 -2.43 16.50 2.25 0.04 -2.39 16 26 H 0.08 1.30 8.06 -52.49 -0.42 0.88 16 27 H 0.10 1.71 7.84 -52.49 -0.41 1.30 16 28 H 0.10 1.55 6.80 -52.49 -0.36 1.20 16 29 H 0.08 1.75 6.90 -51.93 -0.36 1.39 16 30 H 0.06 1.10 6.35 -51.93 -0.33 0.77 16 31 H 0.00 0.03 6.67 -51.93 -0.35 -0.31 16 32 H 0.03 0.83 7.81 -51.93 -0.41 0.42 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.04 0.74 6.23 -51.93 -0.32 0.42 16 35 H 0.08 1.60 7.66 -51.93 -0.40 1.20 16 36 H 0.13 1.49 8.03 -52.49 -0.42 1.07 16 37 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.13 1.14 5.53 -52.48 -0.29 0.85 16 39 H 0.13 0.98 5.37 -51.93 -0.28 0.70 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 359.14 15.07 5.41 5.41 Total: -1.00 -32.08 359.14 -9.30 -41.38 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.98 Total: 0.97 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -3.17 Total: -19.45 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: -0.37 Total: -38.79 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -0.20 Total: -4.22 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.08 -9.30 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597130603.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.059 kcal (2) G-P(sol) polarization free energy of solvation -32.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds