Wall clock time and date at job start Tue Mar 31 2020 08:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50708 * 119.99868 * 2 1 4 4 N 1.46904 * 109.46618 * 125.30908 * 3 2 1 5 5 C 1.46900 * 110.99886 * 301.20375 * 4 3 2 6 6 C 1.50709 * 109.46936 * 288.00630 * 5 4 3 7 7 H 1.07996 * 119.99924 * 3.33337 * 6 5 4 8 8 C 1.37878 * 119.99776 * 183.32683 * 6 5 4 9 9 N 1.31522 * 120.00163 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99837 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47047 * 90.00100 * 10 8 6 12 12 H 1.48501 * 109.46868 * 210.00294 * 10 8 6 13 13 H 1.48501 * 109.47184 * 330.00027 * 10 8 6 14 14 C 1.46894 * 111.00194 * 65.15608 * 4 3 2 15 15 C 1.50710 * 109.47117 * 66.04510 * 14 4 3 16 16 C 1.38299 * 119.98439 * 259.97873 * 15 14 4 17 17 C 1.38218 * 120.12525 * 179.97438 * 16 15 14 18 18 C 1.38222 * 120.09382 * 0.04296 * 17 16 15 19 19 C 1.38622 * 119.97277 * 359.97438 * 18 17 16 20 20 O 1.35951 * 120.06706 * 179.97438 * 19 18 17 21 21 C 1.42911 * 116.99761 * 357.56304 * 20 19 18 22 22 C 1.52998 * 117.49655 * 226.17067 * 21 20 19 23 23 C 1.52996 * 117.49502 * 157.51226 * 21 20 19 24 24 C 1.38291 * 119.98062 * 79.99848 * 15 14 4 25 25 F 1.35098 * 120.05242 * 0.02562 * 24 15 14 26 26 H 1.07996 * 119.99405 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.99914 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.00429 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.46704 * 5.31157 * 3 2 1 30 30 H 1.08999 * 109.47238 * 245.30624 * 3 2 1 31 31 H 1.08997 * 109.47424 * 48.00574 * 5 4 3 32 32 H 1.09001 * 109.47285 * 168.01384 * 5 4 3 33 33 H 0.97000 * 119.99895 * 179.97438 * 9 8 6 34 34 H 1.08997 * 109.47629 * 306.04737 * 14 4 3 35 35 H 1.09003 * 109.47119 * 186.03970 * 14 4 3 36 36 H 1.07998 * 119.93810 * 359.97438 * 16 15 14 37 37 H 1.08001 * 119.95017 * 180.02562 * 17 16 15 38 38 H 1.08005 * 120.01612 * 180.25596 * 18 17 16 39 39 H 1.08996 * 115.54610 * 11.84055 * 21 20 19 40 40 H 1.08997 * 117.50330 * 0.02562 * 22 21 20 41 41 H 1.09004 * 117.49905 * 145.01837 * 22 21 20 42 42 H 1.09000 * 117.49500 * 214.97759 * 23 21 20 43 43 H 1.08995 * 117.50355 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0016 1.3289 1.1303 5 6 2.2923 1.1674 2.4065 6 6 1.5252 2.4268 2.7177 7 1 1.5173 3.2429 2.0105 8 6 0.8334 2.5369 3.9053 9 7 0.8433 1.5431 4.7667 10 14 -0.1180 4.0975 4.2907 11 1 -1.5068 3.9693 3.7809 12 1 -0.1476 4.3089 5.7603 13 1 0.5442 5.2551 3.6374 14 6 4.0418 0.3037 0.9728 15 6 4.9042 0.6416 -0.2161 16 6 4.6952 0.0036 -1.4252 17 6 5.4841 0.3116 -2.5176 18 6 6.4852 1.2579 -2.4047 19 6 6.6984 1.8995 -1.1945 20 8 7.6830 2.8302 -1.0812 21 6 8.4950 3.0593 -2.2346 22 6 10.0100 3.1236 -2.0305 23 6 9.2228 4.4016 -2.3308 24 6 5.9044 1.5891 -0.0973 25 9 6.1095 2.2119 1.0840 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 1.3590 2.1314 0.0951 30 1 2.6170 1.4052 -0.9337 31 1 1.5998 0.3288 2.3338 32 1 3.0133 0.9755 3.2012 33 1 0.3569 1.6207 5.6023 34 1 3.5735 -0.6682 0.8173 35 1 4.6583 0.2706 1.8711 36 1 3.9141 -0.7367 -1.5161 37 1 5.3181 -0.1880 -3.4606 38 1 7.0982 1.5006 -3.2601 39 1 8.1303 2.6169 -3.1616 40 1 10.3873 2.9907 -1.0166 41 1 10.6421 2.7238 -2.8235 42 1 9.3374 4.8421 -3.3212 43 1 9.0820 5.1101 -1.5146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597130603.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:06 Heat of formation + Delta-G solvation = -9.508339 kcal Electronic energy + Delta-G solvation = -24878.996192 eV Core-core repulsion = 21226.429995 eV Total energy + Delta-G solvation = -3652.566197 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.71924 -41.15750 -39.72518 -38.28400 -36.24903 -34.85118 -33.97846 -32.16794 -30.72744 -29.11473 -27.73761 -25.85898 -24.34275 -23.56355 -23.35850 -22.63696 -21.65680 -20.37065 -19.31359 -18.36259 -18.10870 -17.84380 -17.11320 -16.77593 -16.28332 -16.03547 -15.88939 -15.84068 -15.53864 -15.36456 -15.29931 -14.93837 -14.29228 -14.10564 -13.91032 -13.45190 -13.21565 -13.10548 -12.80196 -12.72181 -12.60582 -12.48234 -12.47535 -12.27763 -12.17006 -12.07066 -11.82554 -11.40642 -11.28493 -11.04193 -10.60364 -10.17681 -9.73868 -9.11641 -8.94792 -8.18042 -6.26676 0.14313 0.28329 1.38181 1.40298 1.47688 1.51699 1.93504 2.39792 2.54373 2.84252 3.14000 3.28620 3.45109 3.63094 3.80554 3.87231 3.93716 4.01410 4.05191 4.08897 4.21328 4.30029 4.35887 4.51254 4.60152 4.69813 4.71137 4.77822 4.94807 4.98193 5.07057 5.11551 5.13172 5.17352 5.20745 5.30286 5.33865 5.45922 5.64524 5.73217 5.75003 5.92729 6.09168 6.38099 6.40765 6.60524 6.87463 7.41463 8.92467 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016222 B = 0.003764 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.641146 B = 7437.541294 C = 8516.374557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.186 4.186 3 C 0.093 3.907 4 N -0.536 5.536 5 C 0.211 3.789 6 C -0.515 4.515 7 H 0.055 0.945 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.269 1.269 12 H -0.282 1.282 13 H -0.270 1.270 14 C 0.093 3.907 15 C -0.075 4.075 16 C -0.124 4.124 17 C -0.074 4.074 18 C -0.179 4.179 19 C 0.085 3.915 20 O -0.308 6.308 21 C -0.025 4.025 22 C -0.177 4.177 23 C -0.168 4.168 24 C 0.047 3.953 25 F -0.154 7.154 26 H 0.108 0.892 27 H 0.087 0.913 28 H 0.114 0.886 29 H 0.058 0.942 30 H 0.086 0.914 31 H -0.014 1.014 32 H -0.008 1.008 33 H 0.263 0.737 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.150 0.850 37 H 0.175 0.825 38 H 0.173 0.827 39 H 0.153 0.847 40 H 0.088 0.912 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.621 -2.816 -21.406 25.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.206 4.206 3 C -0.035 4.035 4 N -0.259 5.259 5 C 0.085 3.915 6 C -0.553 4.553 7 H 0.073 0.927 8 C -0.194 4.194 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.195 1.195 14 C -0.035 4.035 15 C -0.077 4.077 16 C -0.142 4.142 17 C -0.092 4.092 18 C -0.197 4.197 19 C 0.039 3.961 20 O -0.223 6.223 21 C -0.080 4.080 22 C -0.214 4.214 23 C -0.204 4.204 24 C 0.027 3.973 25 F -0.133 7.133 26 H 0.127 0.873 27 H 0.105 0.895 28 H 0.132 0.868 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.004 0.996 32 H 0.010 0.990 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.168 0.832 37 H 0.192 0.808 38 H 0.190 0.810 39 H 0.170 0.830 40 H 0.106 0.894 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.870 -2.237 -20.985 25.254 hybrid contribution -0.889 0.122 1.457 1.711 sum 12.981 -2.115 -19.527 23.544 Atomic orbital electron populations 1.23866 0.96061 1.01841 0.99975 1.23517 0.96912 0.99458 1.00696 1.21218 0.93961 0.94645 0.93661 1.62294 1.13637 1.46598 1.03374 1.19362 0.91302 0.95466 0.85327 1.21382 1.29187 1.01564 1.03180 0.92721 1.25820 0.97820 0.99833 0.95933 1.70079 1.43884 1.33468 1.09979 0.85474 0.78977 0.79487 0.77248 1.19436 1.20741 1.19501 1.20898 0.92984 0.94407 0.95200 1.19774 0.94507 0.95987 0.97390 1.21165 1.01265 1.01054 0.90734 1.21389 0.92648 0.95561 0.99592 1.21464 1.02626 0.99834 0.95816 1.19087 0.90433 0.92430 0.94104 1.86062 1.42836 1.54589 1.38764 1.23552 0.90603 1.04455 0.89397 1.23572 0.92520 1.01010 1.04266 1.23483 1.01183 0.90817 1.04966 1.17298 1.00282 0.98858 0.80874 1.91438 1.94553 1.81573 1.45690 0.87338 0.89477 0.86820 0.92328 0.89631 0.99647 0.98959 0.92797 0.92268 0.92647 0.83223 0.80790 0.81040 0.83007 0.89363 0.84767 0.84625 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.01 14.32 67.78 0.97 -5.04 16 2 C -0.19 -6.43 7.41 25.65 0.19 -6.24 16 3 C 0.09 3.60 5.44 85.56 0.47 4.06 16 4 N -0.54 -24.43 4.65 -909.90 -4.23 -28.66 16 5 C 0.21 11.64 4.58 85.56 0.39 12.04 16 6 C -0.51 -30.42 8.66 25.60 0.22 -30.19 16 7 H 0.05 3.23 7.39 -2.91 -0.02 3.21 16 8 C 0.00 0.22 5.46 84.65 0.46 0.68 16 9 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 10 Si 0.96 46.12 29.54 68.60 2.03 48.15 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 14 C 0.09 3.58 4.66 85.56 0.40 3.98 16 15 C -0.08 -2.45 4.59 -19.83 -0.09 -2.54 16 16 C -0.12 -2.88 8.59 22.28 0.19 -2.68 16 17 C -0.07 -1.28 10.04 22.26 0.22 -1.06 16 18 C -0.18 -3.49 9.17 22.36 0.21 -3.28 16 19 C 0.09 2.48 6.69 22.53 0.15 2.63 16 20 O -0.31 -9.03 10.26 -93.00 -0.95 -9.98 16 21 C -0.02 -0.45 6.18 30.59 0.19 -0.26 16 22 C -0.18 -2.51 10.48 30.62 0.32 -2.19 16 23 C -0.17 -2.47 10.48 30.62 0.32 -2.15 16 24 C 0.05 1.70 7.25 22.45 0.16 1.86 16 25 F -0.15 -6.78 16.50 44.97 0.74 -6.04 16 26 H 0.11 3.10 8.06 -2.91 -0.02 3.08 16 27 H 0.09 3.06 7.84 -2.91 -0.02 3.04 16 28 H 0.11 3.50 6.80 -2.91 -0.02 3.48 16 29 H 0.06 2.53 6.90 -2.39 -0.02 2.52 16 30 H 0.09 2.90 6.35 -2.39 -0.02 2.88 16 31 H -0.01 -0.81 6.67 -2.39 -0.02 -0.82 16 32 H -0.01 -0.47 7.81 -2.39 -0.02 -0.49 16 33 H 0.26 15.31 8.31 -92.71 -0.77 14.53 16 34 H 0.06 2.04 6.23 -2.39 -0.01 2.03 16 35 H 0.06 2.37 7.66 -2.39 -0.02 2.35 16 36 H 0.15 2.87 8.03 -2.91 -0.02 2.85 16 37 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 38 H 0.17 1.97 5.53 -2.91 -0.02 1.95 16 39 H 0.15 1.75 5.37 -2.39 -0.01 1.73 16 40 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -74.88 359.14 3.65 -71.23 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 1.01 Total: 13.10 kcal Atomic # 6 Polarization: -35.17 SS G_CDS: 4.77 Total: -30.40 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -3.94 Total: -86.06 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.95 Total: -9.98 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 0.74 Total: -6.04 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -74.88 3.65 -71.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597130603.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.720 kcal (2) G-P(sol) polarization free energy of solvation -74.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds