Wall clock time and date at job start Tue Mar 31 2020 09:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46723 * 2 1 4 4 C 1.50702 * 109.47198 * 119.99473 * 2 1 3 5 5 O 1.21285 * 119.99680 * 113.71801 * 4 2 1 6 6 N 1.34772 * 120.00212 * 293.72286 * 4 2 1 7 7 C 1.46940 * 120.60361 * 356.35544 * 6 4 2 8 8 C 1.53190 * 108.77122 * 233.57843 * 7 6 4 9 9 C 1.53040 * 109.34267 * 305.41682 * 8 7 6 10 10 C 1.53047 * 109.53874 * 61.34781 * 9 8 7 11 11 H 1.08997 * 109.49406 * 58.61886 * 10 9 8 12 12 C 1.50698 * 109.49873 * 178.68868 * 10 9 8 13 13 H 1.07998 * 120.00240 * 119.99622 * 12 10 9 14 14 C 1.37883 * 119.99778 * 300.00038 * 12 10 9 15 15 N 1.31516 * 119.99871 * 359.97438 * 14 12 10 16 16 Si 1.86793 * 120.00100 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47217 * 59.99346 * 16 14 12 18 18 H 1.48500 * 109.47156 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47135 * 299.99569 * 16 14 12 20 20 C 1.46930 * 120.63103 * 176.38024 * 6 4 2 21 21 C 1.50697 * 109.47356 * 239.99850 * 2 1 3 22 22 C 1.38267 * 119.98725 * 119.99725 * 21 2 1 23 23 C 1.38223 * 120.05132 * 180.02562 * 22 21 2 24 24 C 1.38220 * 120.02588 * 359.95820 * 23 22 21 25 25 C 1.38444 * 119.97394 * 0.02562 * 24 23 22 26 26 F 1.35096 * 120.02529 * 179.97438 * 25 24 23 27 27 C 1.38172 * 119.98526 * 299.72650 * 21 2 1 28 28 H 1.09000 * 109.47175 * 306.99386 * 1 2 3 29 29 H 1.09003 * 109.47281 * 66.99053 * 1 2 3 30 30 H 1.08999 * 109.46957 * 186.99373 * 1 2 3 31 31 H 1.08998 * 109.55869 * 113.80993 * 7 6 4 32 32 H 1.08991 * 109.61554 * 353.38397 * 7 6 4 33 33 H 1.09000 * 109.50162 * 185.44781 * 8 7 6 34 34 H 1.08998 * 109.49835 * 65.37983 * 8 7 6 35 35 H 1.08997 * 109.46510 * 181.36825 * 9 8 7 36 36 H 1.09006 * 109.46046 * 301.33001 * 9 8 7 37 37 H 0.96998 * 119.99809 * 179.97438 * 15 14 12 38 38 H 1.08996 * 109.58315 * 6.60233 * 20 6 4 39 39 H 1.08992 * 109.70449 * 246.24363 * 20 6 4 40 40 H 1.07998 * 119.97268 * 359.97438 * 22 21 2 41 41 H 1.08003 * 119.98594 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.01639 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.01281 * 359.97438 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.6329 -1.7586 1.1229 6 7 1.8143 -0.1808 2.4505 7 6 1.1589 1.1267 2.5923 8 6 2.0452 2.0316 3.4540 9 6 2.3460 1.3313 4.7811 10 6 3.1026 0.0283 4.5124 11 1 4.0266 0.2480 3.9777 12 6 3.4264 -0.6444 5.8214 13 1 3.0494 -1.6352 6.0272 14 6 4.2042 0.0053 6.7565 15 7 4.6637 1.2117 6.5057 16 14 4.6063 -0.8288 8.3788 17 1 5.3406 -2.0927 8.1170 18 1 5.4512 0.0726 9.2027 19 1 3.3471 -1.1295 9.1062 20 6 2.2279 -0.8996 3.6634 21 6 2.0324 -0.7104 -1.2304 22 6 2.8273 -0.0382 -2.1404 23 6 3.2884 -0.6884 -3.2697 24 6 2.9560 -2.0118 -3.4900 25 6 2.1604 -2.6860 -2.5794 26 9 1.8344 -3.9793 -2.7940 27 6 1.7031 -2.0349 -1.4459 28 1 -0.3633 0.6184 0.8208 29 1 -0.3634 0.4017 -0.9459 30 1 -0.3633 -1.0200 0.1251 31 1 0.1896 0.9987 3.0741 32 1 1.0239 1.5768 1.6089 33 1 1.5271 2.9708 3.6475 34 1 2.9791 2.2327 2.9291 35 1 2.9564 1.9834 5.4057 36 1 1.4104 1.1087 5.2944 37 1 5.2105 1.6689 7.1636 38 1 2.7978 -1.7863 3.3862 39 1 1.3473 -1.1947 4.2339 40 1 3.0874 0.9959 -1.9691 41 1 3.9089 -0.1621 -3.9800 42 1 3.3166 -2.5197 -4.3722 43 1 1.0862 -2.5612 -0.7325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597908530.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:10:42 Heat of formation + Delta-G solvation = -67.478983 kcal Electronic energy + Delta-G solvation = -25203.283412 eV Core-core repulsion = 21548.203419 eV Total energy + Delta-G solvation = -3655.079993 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.87128 -40.34437 -38.75566 -36.75842 -34.38766 -33.32117 -31.38342 -30.60704 -30.34092 -29.32760 -25.50788 -25.12198 -24.05194 -22.71320 -21.90318 -21.62133 -19.69827 -18.40505 -17.40910 -16.93642 -16.35776 -16.24473 -15.91178 -15.58068 -15.29631 -14.93184 -14.51260 -13.95285 -13.85285 -13.59615 -13.43442 -13.34994 -13.00451 -12.75766 -12.51673 -12.21748 -12.16782 -12.05438 -11.92056 -11.80173 -11.34215 -11.01191 -10.96626 -10.83909 -10.76453 -10.33738 -9.97174 -9.82340 -9.48952 -9.28974 -8.97513 -8.85824 -8.68091 -8.40316 -7.92720 -6.03658 -4.10843 1.09045 1.19770 2.98999 3.30379 3.34321 3.34953 3.39736 3.66846 4.16856 4.41154 4.46573 4.61406 4.80617 4.94657 5.01847 5.08394 5.16467 5.25565 5.32883 5.34495 5.52436 5.57345 5.64319 5.73462 5.78896 5.96211 5.98926 6.07592 6.10596 6.21343 6.29695 6.36647 6.43487 6.46236 6.63160 6.77449 6.84824 6.94024 7.13502 7.30410 7.66842 7.88817 7.97867 8.05328 8.35291 8.60208 8.92535 9.54120 11.01807 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.021685 B = 0.003392 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.895086 B = 8252.916024 C = 8772.516052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.075 4.075 3 H 0.105 0.895 4 C 0.513 3.487 5 O -0.541 6.541 6 N -0.600 5.600 7 C 0.106 3.894 8 C -0.136 4.136 9 C -0.112 4.112 10 C 0.041 3.959 11 H 0.029 0.971 12 C -0.515 4.515 13 H 0.056 0.944 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.117 3.883 21 C -0.035 4.035 22 C -0.123 4.123 23 C -0.096 4.096 24 C -0.157 4.157 25 C 0.093 3.907 26 F -0.143 7.143 27 C -0.113 4.113 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.035 0.965 37 H 0.261 0.739 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.318 2.101 -17.223 19.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.096 4.096 3 H 0.123 0.877 4 C 0.299 3.701 5 O -0.419 6.419 6 N -0.332 5.332 7 C -0.017 4.017 8 C -0.174 4.174 9 C -0.150 4.150 10 C 0.022 3.978 11 H 0.047 0.953 12 C -0.554 4.554 13 H 0.074 0.926 14 C -0.138 4.138 15 N -0.528 5.528 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.004 4.004 21 C -0.035 4.035 22 C -0.141 4.141 23 C -0.114 4.114 24 C -0.176 4.176 25 C 0.074 3.926 26 F -0.121 7.121 27 C -0.132 4.132 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.904 1.628 -17.178 18.979 hybrid contribution 0.279 -0.528 0.987 1.154 sum -7.625 1.100 -16.191 17.930 Atomic orbital electron populations 1.21893 0.91874 1.03271 1.03089 1.20333 0.97868 1.00365 0.91045 0.87690 1.20241 0.79886 0.85671 0.84264 1.90698 1.41390 1.23769 1.86061 1.48251 1.58553 1.20074 1.06290 1.21876 0.96112 0.83640 1.00068 1.22020 0.98902 0.97479 0.99028 1.21632 0.99587 0.99798 0.94029 1.18960 0.93457 0.91413 0.94015 0.95293 1.21042 1.31750 1.01965 1.00634 0.92551 1.24930 0.95489 0.94897 0.98439 1.69859 1.35058 1.12545 1.35323 0.86639 0.78390 0.79415 0.83460 1.20218 1.21297 1.20248 1.22002 0.98759 0.96487 0.83150 1.19203 0.96537 0.93221 0.94572 1.21095 0.98032 1.00494 0.94492 1.20904 0.99235 0.93699 0.97522 1.21100 1.00499 0.95835 1.00184 1.17674 0.99641 0.78983 0.96307 1.91484 1.91182 1.34621 1.94831 1.20927 1.01594 0.94828 0.95853 0.90873 0.91324 0.91891 0.91828 0.90833 0.92415 0.92378 0.88620 0.94579 0.92915 0.90312 0.92673 0.85362 0.85088 0.85054 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.55 37.16 0.32 -1.11 16 2 C -0.07 -0.93 2.05 -92.92 -0.19 -1.12 16 3 H 0.11 1.12 6.93 -51.93 -0.36 0.76 16 4 C 0.51 8.88 6.90 -10.99 -0.08 8.80 16 5 O -0.54 -11.46 14.28 5.55 0.08 -11.38 16 6 N -0.60 -10.62 2.97 -172.76 -0.51 -11.13 16 7 C 0.11 1.53 5.08 -3.70 -0.02 1.51 16 8 C -0.14 -2.30 6.08 -26.61 -0.16 -2.47 16 9 C -0.11 -2.46 4.96 -26.69 -0.13 -2.59 16 10 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 11 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 12 C -0.52 -13.87 8.56 -34.44 -0.29 -14.17 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 15 N -0.89 -24.76 11.31 55.43 0.63 -24.14 16 16 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C 0.12 2.49 5.66 -3.71 -0.02 2.47 16 21 C -0.03 -0.45 4.46 -104.64 -0.47 -0.92 16 22 C -0.12 -1.36 9.67 -39.58 -0.38 -1.74 16 23 C -0.10 -0.96 10.04 -39.59 -0.40 -1.36 16 24 C -0.16 -1.75 10.03 -39.51 -0.40 -2.15 16 25 C 0.09 1.25 7.30 -39.41 -0.29 0.96 16 26 F -0.14 -2.00 17.27 2.25 0.04 -1.96 16 27 C -0.11 -1.59 7.91 -39.51 -0.31 -1.90 16 28 H 0.07 0.66 5.88 -51.93 -0.31 0.35 16 29 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 30 H 0.06 0.67 7.65 -51.93 -0.40 0.27 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.82 4.83 -51.93 -0.25 0.57 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.10 2.39 6.04 -51.93 -0.31 2.07 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.08 1.82 7.00 -51.93 -0.36 1.46 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.13 1.13 7.94 -52.49 -0.42 0.71 16 41 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 42 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.13 1.94 7.46 -52.48 -0.39 1.55 16 LS Contribution 344.38 15.07 5.19 5.19 Total: -1.00 -30.60 344.38 -8.87 -39.47 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.14 Total: 1.31 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -3.12 Total: -13.36 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.11 Total: -35.27 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.08 Total: -11.38 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.60 -8.87 -39.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908530.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.014 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds