Wall clock time and date at job start Tue Mar 31 2020 09:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46852 * 2 1 4 4 C 1.50696 * 109.46902 * 240.00131 * 2 1 3 5 5 O 1.21276 * 120.00152 * 332.70931 * 4 2 1 6 6 N 1.34778 * 119.99666 * 152.71255 * 4 2 1 7 7 C 1.46926 * 120.63414 * 5.44907 * 6 4 2 8 8 C 1.53185 * 108.77903 * 126.36501 * 7 6 4 9 9 C 1.53048 * 109.31329 * 54.63623 * 8 7 6 10 10 C 1.53046 * 109.53469 * 298.63573 * 9 8 7 11 11 H 1.08993 * 109.49443 * 301.37812 * 10 9 8 12 12 C 1.50696 * 109.49189 * 181.31475 * 10 9 8 13 13 H 1.08002 * 120.00319 * 239.99852 * 12 10 9 14 14 C 1.37883 * 120.00375 * 60.00066 * 12 10 9 15 15 N 1.31511 * 119.99570 * 0.02562 * 14 12 10 16 16 Si 1.86794 * 120.00119 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46924 * 60.00283 * 16 14 12 18 18 H 1.48502 * 109.47043 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47345 * 299.99970 * 16 14 12 20 20 C 1.46927 * 120.63175 * 185.16489 * 6 4 2 21 21 C 1.50703 * 109.46945 * 119.99865 * 2 1 3 22 22 C 1.38267 * 119.98744 * 239.99807 * 21 2 1 23 23 C 1.38215 * 120.05284 * 180.02562 * 22 21 2 24 24 C 1.38224 * 120.02574 * 359.97438 * 23 22 21 25 25 C 1.38440 * 119.97199 * 0.02562 * 24 23 22 26 26 F 1.35097 * 120.02556 * 179.97438 * 25 24 23 27 27 C 1.38175 * 119.98567 * 60.25781 * 21 2 1 28 28 H 1.09004 * 109.47079 * 175.23752 * 1 2 3 29 29 H 1.09003 * 109.47205 * 295.24086 * 1 2 3 30 30 H 1.09001 * 109.47015 * 55.23738 * 1 2 3 31 31 H 1.09000 * 109.58435 * 246.15678 * 7 6 4 32 32 H 1.09003 * 109.58572 * 6.43482 * 7 6 4 33 33 H 1.09004 * 109.50008 * 174.58649 * 8 7 6 34 34 H 1.08996 * 109.49852 * 294.68593 * 8 7 6 35 35 H 1.08998 * 109.45692 * 58.65574 * 9 8 7 36 36 H 1.08993 * 109.46143 * 178.62686 * 9 8 7 37 37 H 0.96995 * 119.99970 * 180.02562 * 15 14 12 38 38 H 1.09004 * 109.58263 * 353.41735 * 20 6 4 39 39 H 1.09000 * 109.58578 * 113.84208 * 20 6 4 40 40 H 1.07999 * 119.97474 * 0.02629 * 22 21 2 41 41 H 1.08003 * 119.98880 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.01348 * 179.97438 * 24 23 22 43 43 H 1.08005 * 120.01294 * 359.97305 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.3544 -1.5688 -1.7543 6 7 3.2349 -0.3917 -1.7488 7 6 4.1188 0.5589 -1.0603 8 6 5.4889 -0.0967 -0.8617 9 6 6.0186 -0.5819 -2.2132 10 6 5.0623 -1.6271 -2.7923 11 1 4.9697 -2.4606 -2.0962 12 6 5.6012 -2.1277 -4.1076 13 1 5.0210 -2.0061 -5.0104 14 6 6.8351 -2.7411 -4.1586 15 7 7.5414 -2.8897 -3.0592 16 14 7.5027 -3.3622 -5.7888 17 1 7.6271 -2.2266 -6.7376 18 1 8.8376 -3.9766 -5.5752 19 1 6.5744 -4.3765 -6.3497 20 6 3.6897 -0.9930 -3.0099 21 6 2.0323 -0.7104 1.2305 22 6 2.8273 -0.0382 2.1405 23 6 3.2891 -0.6886 3.2692 24 6 2.9563 -2.0119 3.4899 25 6 2.1605 -2.6859 2.5795 26 9 1.8349 -3.9794 2.7938 27 6 1.7027 -2.0348 1.4462 28 1 -0.3633 -1.0242 -0.0853 29 1 -0.3634 0.4382 0.9296 30 1 -0.3633 0.5860 -0.8443 31 1 4.2286 1.4592 -1.6648 32 1 3.6920 0.8190 -0.0916 33 1 6.1824 0.6303 -0.4390 34 1 5.3918 -0.9445 -0.1835 35 1 6.0921 0.2624 -2.8986 36 1 7.0043 -1.0270 -2.0783 37 1 8.4095 -3.3208 -3.0951 38 1 2.9811 -1.7586 -3.3260 39 1 3.7639 -0.2217 -3.7766 40 1 3.0875 0.9959 1.9691 41 1 3.9096 -0.1624 3.9795 42 1 3.3176 -2.5200 4.3717 43 1 1.0849 -2.5608 0.7334 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597908531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:10:45 Heat of formation + Delta-G solvation = -69.924225 kcal Electronic energy + Delta-G solvation = -25731.943940 eV Core-core repulsion = 22076.757913 eV Total energy + Delta-G solvation = -3655.186027 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.86667 -40.36044 -38.70656 -36.87501 -34.17449 -33.36344 -31.33104 -30.69723 -30.15528 -29.53034 -25.66650 -25.01504 -23.91070 -22.70788 -21.94411 -21.58747 -19.63903 -18.32847 -17.35660 -17.21567 -16.35054 -16.19669 -15.85797 -15.59416 -15.24354 -14.93993 -14.54509 -13.98127 -13.78803 -13.51680 -13.42551 -13.28898 -12.79085 -12.76138 -12.67575 -12.17307 -12.09653 -12.03857 -11.88074 -11.84466 -11.27625 -11.00868 -10.96370 -10.81702 -10.73926 -10.30169 -9.95749 -9.82105 -9.54759 -9.38969 -8.96930 -8.84892 -8.65674 -8.38758 -7.91290 -6.01908 -4.09236 1.04870 1.14374 2.94812 3.31232 3.35718 3.37578 3.43263 3.57955 4.17696 4.42270 4.54560 4.61251 4.79880 4.95485 5.00116 5.08573 5.18596 5.27161 5.31414 5.39856 5.61489 5.64319 5.71548 5.79156 5.84167 5.95593 6.07123 6.08835 6.13914 6.19764 6.31907 6.36863 6.41313 6.47551 6.64612 6.80169 6.81595 6.96172 7.15804 7.32392 7.68545 7.90712 7.99357 8.07287 8.36665 8.59879 8.94186 9.55618 11.03615 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016068 B = 0.004292 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.171448 B = 6521.724174 C = 6935.825035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.074 4.074 3 H 0.100 0.900 4 C 0.516 3.484 5 O -0.545 6.545 6 N -0.599 5.599 7 C 0.107 3.893 8 C -0.133 4.133 9 C -0.112 4.112 10 C 0.040 3.960 11 H 0.028 0.972 12 C -0.515 4.515 13 H 0.056 0.944 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.116 3.884 21 C -0.043 4.043 22 C -0.123 4.123 23 C -0.089 4.089 24 C -0.156 4.156 25 C 0.101 3.899 26 F -0.140 7.140 27 C -0.138 4.138 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.035 0.965 36 H 0.095 0.905 37 H 0.261 0.739 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.830 9.354 13.093 18.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.095 4.095 3 H 0.118 0.882 4 C 0.303 3.697 5 O -0.423 6.423 6 N -0.330 5.330 7 C -0.016 4.016 8 C -0.171 4.171 9 C -0.150 4.150 10 C 0.021 3.979 11 H 0.047 0.953 12 C -0.553 4.553 13 H 0.074 0.926 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.004 4.004 21 C -0.044 4.044 22 C -0.141 4.141 23 C -0.107 4.107 24 C -0.175 4.175 25 C 0.082 3.918 26 F -0.118 7.118 27 C -0.156 4.156 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.114 0.886 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.017 8.773 12.859 17.990 hybrid contribution 0.618 -0.575 -0.785 1.153 sum -8.400 8.198 12.074 16.839 Atomic orbital electron populations 1.21667 0.91604 1.03716 1.01869 1.20386 0.98262 0.99821 0.91051 0.88164 1.20238 0.81485 0.83153 0.84828 1.90656 1.57061 1.32363 1.62261 1.48289 1.15928 1.43977 1.24848 1.21815 0.91771 0.91824 0.96237 1.21971 0.94397 0.99718 1.01004 1.21630 1.03465 0.98004 0.91915 1.18874 0.88445 0.93684 0.96870 0.95349 1.21030 1.02776 1.38017 0.93519 0.92559 1.24931 0.96845 0.95604 0.96372 1.69860 1.12789 1.43318 1.26774 0.86642 0.78059 0.79178 0.84039 1.20254 1.21303 1.20218 1.21925 0.98944 0.97110 0.82454 1.19300 0.96893 0.93251 0.94941 1.21095 0.98158 1.00441 0.94451 1.20938 0.98744 0.93639 0.97359 1.21151 1.00229 0.95858 1.00230 1.17674 0.99036 0.78999 0.96066 1.91502 1.91093 1.34471 1.94769 1.21115 1.02305 0.95175 0.97046 0.91047 0.91887 0.91867 0.91978 0.91087 0.92494 0.92397 0.94601 0.88626 0.92917 0.90306 0.92650 0.85174 0.84870 0.84841 0.84206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.60 37.16 0.32 -1.17 16 2 C -0.07 -0.94 2.10 -92.92 -0.19 -1.14 16 3 H 0.10 1.03 6.37 -51.93 -0.33 0.70 16 4 C 0.52 9.09 6.39 -10.99 -0.07 9.02 16 5 O -0.55 -11.47 15.32 5.56 0.09 -11.38 16 6 N -0.60 -10.93 2.98 -173.04 -0.52 -11.44 16 7 C 0.11 1.61 6.15 -3.71 -0.02 1.58 16 8 C -0.13 -2.34 6.08 -26.61 -0.16 -2.50 16 9 C -0.11 -2.50 4.96 -26.68 -0.13 -2.63 16 10 C 0.04 1.00 2.24 -91.87 -0.21 0.79 16 11 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 12 C -0.51 -13.98 8.56 -34.44 -0.29 -14.27 16 13 H 0.06 1.51 7.75 -52.49 -0.41 1.10 16 14 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 15 N -0.89 -25.07 11.31 55.43 0.63 -24.44 16 16 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 C 0.12 2.52 5.64 -3.93 -0.02 2.50 16 21 C -0.04 -0.55 4.55 -104.63 -0.48 -1.03 16 22 C -0.12 -1.29 8.74 -39.58 -0.35 -1.64 16 23 C -0.09 -0.88 10.04 -39.59 -0.40 -1.28 16 24 C -0.16 -1.78 10.03 -39.51 -0.40 -2.17 16 25 C 0.10 1.41 7.30 -39.42 -0.29 1.12 16 26 F -0.14 -2.07 17.27 2.25 0.04 -2.03 16 27 C -0.14 -1.99 8.84 -39.52 -0.35 -2.34 16 28 H 0.07 0.92 7.12 -51.93 -0.37 0.55 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.85 4.05 -51.93 -0.21 0.64 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 2.43 6.04 -51.93 -0.31 2.12 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.08 1.84 7.00 -51.93 -0.36 1.48 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.13 1.03 7.45 -52.49 -0.39 0.63 16 41 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 42 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.14 2.18 7.52 -52.48 -0.39 1.79 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -30.67 346.11 -8.84 -39.52 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.14 Total: 1.92 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -3.13 Total: -13.50 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.11 Total: -35.89 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.67 -8.84 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.406 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds