Wall clock time and date at job start Tue Mar 31 2020 09:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46852 * 2 1 4 4 C 1.50696 * 109.46902 * 240.00131 * 2 1 3 5 5 O 1.21276 * 120.00152 * 332.70931 * 4 2 1 6 6 N 1.34778 * 119.99666 * 152.71255 * 4 2 1 7 7 C 1.46926 * 120.63414 * 5.44907 * 6 4 2 8 8 C 1.53185 * 108.77903 * 126.36501 * 7 6 4 9 9 C 1.53048 * 109.31329 * 54.63623 * 8 7 6 10 10 C 1.53046 * 109.53469 * 298.63573 * 9 8 7 11 11 H 1.08993 * 109.49443 * 301.37812 * 10 9 8 12 12 C 1.50696 * 109.49189 * 181.31475 * 10 9 8 13 13 H 1.08002 * 120.00319 * 239.99852 * 12 10 9 14 14 C 1.37883 * 120.00375 * 60.00066 * 12 10 9 15 15 N 1.31511 * 119.99570 * 0.02562 * 14 12 10 16 16 Si 1.86794 * 120.00119 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46924 * 60.00283 * 16 14 12 18 18 H 1.48502 * 109.47043 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47345 * 299.99970 * 16 14 12 20 20 C 1.46927 * 120.63175 * 185.16489 * 6 4 2 21 21 C 1.50703 * 109.46945 * 119.99865 * 2 1 3 22 22 C 1.38267 * 119.98744 * 239.99807 * 21 2 1 23 23 C 1.38215 * 120.05284 * 180.02562 * 22 21 2 24 24 C 1.38224 * 120.02574 * 359.97438 * 23 22 21 25 25 C 1.38440 * 119.97199 * 0.02562 * 24 23 22 26 26 F 1.35097 * 120.02556 * 179.97438 * 25 24 23 27 27 C 1.38175 * 119.98567 * 60.25781 * 21 2 1 28 28 H 1.09004 * 109.47079 * 175.23752 * 1 2 3 29 29 H 1.09003 * 109.47205 * 295.24086 * 1 2 3 30 30 H 1.09001 * 109.47015 * 55.23738 * 1 2 3 31 31 H 1.09000 * 109.58435 * 246.15678 * 7 6 4 32 32 H 1.09003 * 109.58572 * 6.43482 * 7 6 4 33 33 H 1.09004 * 109.50008 * 174.58649 * 8 7 6 34 34 H 1.08996 * 109.49852 * 294.68593 * 8 7 6 35 35 H 1.08998 * 109.45692 * 58.65574 * 9 8 7 36 36 H 1.08993 * 109.46143 * 178.62686 * 9 8 7 37 37 H 0.96995 * 119.99970 * 180.02562 * 15 14 12 38 38 H 1.09004 * 109.58263 * 353.41735 * 20 6 4 39 39 H 1.09000 * 109.58578 * 113.84208 * 20 6 4 40 40 H 1.07999 * 119.97474 * 0.02629 * 22 21 2 41 41 H 1.08003 * 119.98880 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.01348 * 179.97438 * 24 23 22 43 43 H 1.08005 * 120.01294 * 359.97305 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.3544 -1.5688 -1.7543 6 7 3.2349 -0.3917 -1.7488 7 6 4.1188 0.5589 -1.0603 8 6 5.4889 -0.0967 -0.8617 9 6 6.0186 -0.5819 -2.2132 10 6 5.0623 -1.6271 -2.7923 11 1 4.9697 -2.4606 -2.0962 12 6 5.6012 -2.1277 -4.1076 13 1 5.0210 -2.0061 -5.0104 14 6 6.8351 -2.7411 -4.1586 15 7 7.5414 -2.8897 -3.0592 16 14 7.5027 -3.3622 -5.7888 17 1 7.6271 -2.2266 -6.7376 18 1 8.8376 -3.9766 -5.5752 19 1 6.5744 -4.3765 -6.3497 20 6 3.6897 -0.9930 -3.0099 21 6 2.0323 -0.7104 1.2305 22 6 2.8273 -0.0382 2.1405 23 6 3.2891 -0.6886 3.2692 24 6 2.9563 -2.0119 3.4899 25 6 2.1605 -2.6859 2.5795 26 9 1.8349 -3.9794 2.7938 27 6 1.7027 -2.0348 1.4462 28 1 -0.3633 -1.0242 -0.0853 29 1 -0.3634 0.4382 0.9296 30 1 -0.3633 0.5860 -0.8443 31 1 4.2286 1.4592 -1.6648 32 1 3.6920 0.8190 -0.0916 33 1 6.1824 0.6303 -0.4390 34 1 5.3918 -0.9445 -0.1835 35 1 6.0921 0.2624 -2.8986 36 1 7.0043 -1.0270 -2.0783 37 1 8.4095 -3.3208 -3.0951 38 1 2.9811 -1.7586 -3.3260 39 1 3.7639 -0.2217 -3.7766 40 1 3.0875 0.9959 1.9691 41 1 3.9096 -0.1624 3.9795 42 1 3.3176 -2.5200 4.3717 43 1 1.0849 -2.5608 0.7334 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597908531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:10:44 Heat of formation + Delta-G solvation = -86.678797 kcal Electronic energy + Delta-G solvation = -25732.670473 eV Core-core repulsion = 22076.757913 eV Total energy + Delta-G solvation = -3655.912559 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.94915 -41.61404 -39.82069 -38.43777 -35.52161 -34.96035 -32.99906 -32.00851 -31.49521 -30.45224 -27.33284 -26.59846 -25.13085 -23.65593 -23.41097 -22.90122 -21.21109 -19.71364 -18.68966 -18.40373 -18.10107 -17.14390 -17.02885 -16.80310 -16.65447 -16.49507 -16.09757 -15.14765 -15.06891 -14.96684 -14.71933 -14.48350 -14.32054 -14.28445 -13.85693 -13.60080 -13.45378 -13.03976 -12.95336 -12.85933 -12.77990 -12.72226 -12.59205 -12.24898 -11.97527 -11.87106 -11.80656 -11.58636 -11.26734 -10.90064 -10.72095 -10.43818 -9.92580 -9.64173 -9.47934 -8.11798 -6.27430 0.13164 0.22062 1.39794 1.41627 1.48868 1.60896 2.10735 2.42449 2.60730 3.14538 3.21390 3.56557 3.60257 3.79132 4.01043 4.04915 4.17491 4.23084 4.27744 4.33284 4.36251 4.45900 4.54711 4.62508 4.76804 4.83420 4.86651 4.88985 4.94980 4.99181 5.09508 5.13078 5.16922 5.24266 5.29367 5.35762 5.44601 5.50672 5.57755 5.60303 5.92537 5.92849 6.14263 6.33373 6.56660 6.82254 7.20736 7.40799 8.91679 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016068 B = 0.004292 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.171448 B = 6521.724174 C = 6935.825035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.062 4.062 3 H 0.142 0.858 4 C 0.508 3.492 5 O -0.592 6.592 6 N -0.605 5.605 7 C 0.106 3.894 8 C -0.124 4.124 9 C -0.106 4.106 10 C 0.042 3.958 11 H -0.022 1.022 12 C -0.540 4.540 13 H 0.052 0.948 14 C 0.017 3.983 15 N -0.913 5.913 16 Si 0.955 3.045 17 H -0.265 1.265 18 H -0.282 1.282 19 H -0.278 1.278 20 C 0.129 3.871 21 C -0.055 4.055 22 C -0.112 4.112 23 C -0.080 4.080 24 C -0.155 4.155 25 C 0.069 3.931 26 F -0.156 7.156 27 C -0.163 4.163 28 H 0.042 0.958 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.037 0.963 35 H 0.041 0.959 36 H 0.061 0.939 37 H 0.261 0.739 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.173 0.827 41 H 0.175 0.825 42 H 0.153 0.847 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.077 13.020 14.769 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.083 4.083 3 H 0.159 0.841 4 C 0.297 3.703 5 O -0.473 6.473 6 N -0.335 5.335 7 C -0.015 4.015 8 C -0.162 4.162 9 C -0.144 4.144 10 C 0.023 3.977 11 H -0.004 1.004 12 C -0.578 4.578 13 H 0.070 0.930 14 C -0.182 4.182 15 N -0.552 5.552 16 Si 0.780 3.220 17 H -0.190 1.190 18 H -0.207 1.207 19 H -0.204 1.204 20 C 0.006 3.994 21 C -0.056 4.056 22 C -0.130 4.130 23 C -0.097 4.097 24 C -0.174 4.174 25 C 0.050 3.950 26 F -0.135 7.135 27 C -0.182 4.182 28 H 0.062 0.938 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.131 0.869 33 H 0.113 0.887 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.190 0.810 41 H 0.192 0.808 42 H 0.171 0.829 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.266 12.465 14.553 20.868 hybrid contribution 0.385 -1.776 -1.276 2.221 sum -7.880 10.688 13.278 18.779 Atomic orbital electron populations 1.21677 0.90900 1.02412 1.03663 1.20435 0.98877 1.00874 0.88081 0.84051 1.21246 0.80737 0.82566 0.85751 1.90634 1.58352 1.34455 1.63860 1.48380 1.16863 1.44388 1.23918 1.22088 0.89594 0.91272 0.98529 1.21871 0.96824 1.00060 0.97488 1.21420 1.01066 0.97017 0.94881 1.18774 0.90967 0.93145 0.94850 1.00434 1.21417 1.03173 1.38710 0.94496 0.92982 1.25693 0.97105 0.95738 0.99655 1.70005 1.12956 1.43725 1.28550 0.85667 0.77326 0.78788 0.80214 1.19004 1.20731 1.20354 1.21457 0.96375 0.96684 0.84853 1.19390 0.97992 0.92523 0.95688 1.21570 0.95993 1.02072 0.93374 1.21460 0.97858 0.92740 0.97660 1.21509 0.99009 0.96823 1.00038 1.18040 1.00912 0.78814 0.97202 1.91449 1.91497 1.35659 1.94924 1.21072 1.03370 0.96586 0.97193 0.93843 0.88857 0.91345 0.89335 0.86876 0.88739 0.94457 0.94065 0.92081 0.92938 0.93394 0.91603 0.80967 0.80780 0.82926 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 8.60 71.98 0.62 -2.13 16 2 C -0.06 -1.42 2.10 -12.28 -0.03 -1.45 16 3 H 0.14 2.08 6.37 -2.39 -0.02 2.06 16 4 C 0.51 17.80 6.39 87.66 0.56 18.36 16 5 O -0.59 -26.31 15.32 -3.02 -0.05 -26.36 16 6 N -0.60 -21.57 2.98 -819.75 -2.44 -24.01 16 7 C 0.11 2.79 6.15 86.36 0.53 3.32 16 8 C -0.12 -4.08 6.08 30.67 0.19 -3.89 16 9 C -0.11 -4.72 4.96 30.63 0.15 -4.57 16 10 C 0.04 2.15 2.24 -11.61 -0.03 2.13 16 11 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 12 C -0.54 -30.39 8.56 25.60 0.22 -30.17 16 13 H 0.05 2.89 7.75 -2.91 -0.02 2.86 16 14 C 0.02 0.97 5.30 84.66 0.45 1.42 16 15 N -0.91 -53.05 11.31 21.45 0.24 -52.80 16 16 Si 0.95 44.13 29.54 68.60 2.03 46.15 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 20 C 0.13 5.75 5.64 86.22 0.49 6.23 16 21 C -0.06 -1.29 4.55 -19.87 -0.09 -1.38 16 22 C -0.11 -1.78 8.74 22.27 0.19 -1.59 16 23 C -0.08 -1.20 10.04 22.26 0.22 -0.98 16 24 C -0.16 -3.21 10.03 22.31 0.22 -2.98 16 25 C 0.07 1.96 7.30 22.38 0.16 2.13 16 26 F -0.16 -4.96 17.27 44.97 0.78 -4.18 16 27 C -0.16 -4.87 8.84 22.31 0.20 -4.67 16 28 H 0.04 1.16 7.12 -2.38 -0.02 1.15 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.11 2.02 4.05 -2.39 -0.01 2.01 16 33 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.06 3.16 6.04 -2.39 -0.01 3.15 16 37 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 38 H 0.05 2.39 7.00 -2.38 -0.02 2.37 16 39 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.17 1.31 7.45 -2.91 -0.02 1.29 16 41 H 0.17 1.27 8.06 -2.91 -0.02 1.24 16 42 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 43 H 0.11 3.81 7.52 -2.91 -0.02 3.78 16 Total: -1.00 -74.54 346.11 5.63 -68.91 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 1.01 Total: 12.50 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 4.06 Total: -20.21 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -2.20 Total: -76.81 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.05 Total: -26.36 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.78 Total: -4.18 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -74.54 5.63 -68.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.767 kcal (2) G-P(sol) polarization free energy of solvation -74.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds