Wall clock time and date at job start Tue Mar 31 2020 09:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47048 * 2 1 4 4 C 1.50698 * 109.47194 * 239.99898 * 2 1 3 5 5 O 1.21280 * 120.00046 * 336.60281 * 4 2 1 6 6 N 1.34776 * 119.99833 * 156.60677 * 4 2 1 7 7 C 1.46932 * 120.60677 * 355.58180 * 6 4 2 8 8 C 1.53188 * 108.76916 * 233.53466 * 7 6 4 9 9 C 1.53036 * 109.34039 * 305.41042 * 8 7 6 10 10 C 1.53037 * 109.53818 * 61.35014 * 9 8 7 11 11 H 1.08998 * 109.50062 * 58.62116 * 10 9 8 12 12 C 1.50709 * 109.49774 * 178.68686 * 10 9 8 13 13 H 1.08003 * 119.99841 * 120.00278 * 12 10 9 14 14 C 1.37874 * 119.99556 * 299.99751 * 12 10 9 15 15 N 1.31516 * 120.00632 * 0.02562 * 14 12 10 16 16 Si 1.86808 * 119.99721 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46877 * 60.00011 * 16 14 12 18 18 H 1.48498 * 109.47114 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46793 * 300.00364 * 16 14 12 20 20 C 1.46932 * 120.62801 * 175.55772 * 6 4 2 21 21 C 1.50696 * 109.46729 * 119.99829 * 2 1 3 22 22 C 1.38269 * 119.99012 * 59.73306 * 21 2 1 23 23 C 1.38220 * 120.05398 * 179.72740 * 22 21 2 24 24 C 1.38231 * 120.02440 * 0.54024 * 23 22 21 25 25 C 1.38433 * 119.96962 * 359.72853 * 24 23 22 26 26 F 1.35101 * 120.02396 * 180.02562 * 25 24 23 27 27 C 1.38181 * 119.98761 * 239.99992 * 21 2 1 28 28 H 1.09007 * 109.46753 * 64.90259 * 1 2 3 29 29 H 1.09000 * 109.47334 * 184.89845 * 1 2 3 30 30 H 1.08995 * 109.47376 * 304.90601 * 1 2 3 31 31 H 1.08995 * 109.56251 * 113.76247 * 7 6 4 32 32 H 1.09006 * 109.61469 * 353.33364 * 7 6 4 33 33 H 1.09007 * 109.49753 * 185.44177 * 8 7 6 34 34 H 1.09003 * 109.50347 * 65.37830 * 8 7 6 35 35 H 1.08997 * 109.46342 * 181.37603 * 9 8 7 36 36 H 1.09007 * 109.46370 * 301.33109 * 9 8 7 37 37 H 0.96999 * 120.00339 * 180.02562 * 15 14 12 38 38 H 1.08997 * 109.58819 * 6.64215 * 20 6 4 39 39 H 1.09009 * 109.70025 * 246.29194 * 20 6 4 40 40 H 1.08005 * 119.97302 * 359.97041 * 22 21 2 41 41 H 1.07995 * 119.98971 * 180.26874 * 23 22 21 42 42 H 1.08000 * 120.01303 * 179.75278 * 24 23 22 43 43 H 1.08000 * 120.00847 * 359.97438 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 1.3257 -1.5182 -1.7953 6 7 3.2670 -0.4482 -1.7031 7 6 4.0973 0.5963 -1.0879 8 6 4.5569 1.5675 -2.1798 9 6 5.2547 0.7840 -3.2939 10 6 4.2702 -0.2098 -3.9146 11 1 3.4084 0.3293 -4.3080 12 6 4.9489 -0.9581 -5.0330 13 1 5.0393 -2.0333 -4.9864 14 6 5.4540 -0.2700 -6.1157 15 7 5.3442 1.0393 -6.1724 16 14 6.2946 -1.1976 -7.5024 17 1 5.3384 -2.1613 -8.1041 18 1 6.7454 -0.2353 -8.5396 19 1 7.4675 -1.9336 -6.9658 20 6 3.8079 -1.2016 -2.8426 21 6 2.0322 -0.7104 1.2305 22 6 1.6935 -2.0325 1.4519 23 6 2.1580 -2.6870 2.5772 24 6 2.9528 -2.0170 3.4884 25 6 3.2880 -0.6917 3.2705 26 9 4.0652 -0.0359 4.1600 27 6 2.8266 -0.0386 2.1399 28 1 -0.3633 0.4359 -0.9307 29 1 -0.3634 -1.0239 0.0878 30 1 -0.3634 0.5880 0.8427 31 1 4.9669 0.1400 -0.6151 32 1 3.5137 1.1353 -0.3414 33 1 5.2518 2.2914 -1.7539 34 1 3.6925 2.0903 -2.5892 35 1 5.6041 1.4758 -4.0604 36 1 6.1048 0.2421 -2.8794 37 1 5.6993 1.5234 -6.9343 38 1 3.0333 -1.8491 -3.2534 39 1 4.6537 -1.8063 -2.5151 40 1 1.0686 -2.5554 0.7430 41 1 1.8964 -3.7209 2.7469 42 1 3.3124 -2.5274 4.3696 43 1 3.0879 0.9953 1.9687 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597908532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:10:47 Heat of formation + Delta-G solvation = -69.228144 kcal Electronic energy + Delta-G solvation = -25402.065603 eV Core-core repulsion = 21746.909761 eV Total energy + Delta-G solvation = -3655.155842 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.03941 -40.37910 -38.79024 -36.86132 -34.21986 -33.36128 -31.33801 -30.86591 -30.23946 -29.44082 -25.67645 -25.02661 -23.86886 -22.96644 -21.94161 -21.62750 -19.63895 -18.35486 -17.50299 -17.08092 -16.43270 -16.27696 -15.98580 -15.74968 -15.28351 -15.05257 -14.62252 -14.06341 -13.70643 -13.63896 -13.44088 -13.21456 -13.02842 -12.76413 -12.53394 -12.23128 -12.15116 -12.05214 -11.91588 -11.84995 -11.39566 -11.06023 -10.94794 -10.83579 -10.74508 -10.29862 -9.96948 -9.83839 -9.57162 -9.41547 -9.06759 -8.87139 -8.73742 -8.39886 -7.92124 -6.03079 -4.10397 0.95371 1.01466 2.94006 3.30645 3.33243 3.35149 3.38638 3.53845 4.05689 4.41450 4.46374 4.54157 4.76016 4.85915 4.99189 5.02156 5.09174 5.22481 5.26886 5.39099 5.59826 5.61889 5.68756 5.77405 5.85100 5.89627 5.91319 6.08284 6.09484 6.20976 6.30622 6.31981 6.38162 6.46200 6.63633 6.70304 6.78020 6.94259 7.14441 7.31290 7.67250 7.89196 7.98241 8.05796 8.35588 8.58951 8.92874 9.54582 11.02354 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.020969 B = 0.003601 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.993727 B = 7773.592218 C = 8080.794518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.077 4.077 3 H 0.102 0.898 4 C 0.517 3.483 5 O -0.546 6.546 6 N -0.598 5.598 7 C 0.108 3.892 8 C -0.136 4.136 9 C -0.112 4.112 10 C 0.041 3.959 11 H 0.029 0.971 12 C -0.515 4.515 13 H 0.056 0.944 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.117 3.883 21 C -0.040 4.040 22 C -0.116 4.116 23 C -0.088 4.088 24 C -0.157 4.157 25 C 0.098 3.902 26 F -0.141 7.141 27 C -0.147 4.147 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.035 0.965 37 H 0.261 0.739 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.608 -0.686 18.556 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.099 4.099 3 H 0.120 0.880 4 C 0.304 3.696 5 O -0.424 6.424 6 N -0.329 5.329 7 C -0.015 4.015 8 C -0.174 4.174 9 C -0.150 4.150 10 C 0.022 3.978 11 H 0.048 0.952 12 C -0.554 4.554 13 H 0.074 0.926 14 C -0.137 4.137 15 N -0.528 5.528 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.004 4.004 21 C -0.040 4.040 22 C -0.134 4.134 23 C -0.106 4.106 24 C -0.176 4.176 25 C 0.079 3.921 26 F -0.119 7.119 27 C -0.166 4.166 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.886 -0.937 18.154 19.108 hybrid contribution 0.855 -0.185 -0.583 1.051 sum -5.031 -1.122 17.571 18.312 Atomic orbital electron populations 1.21644 0.91422 1.03263 1.02274 1.20417 0.98408 1.00122 0.90909 0.88025 1.20184 0.81544 0.82945 0.84910 1.90657 1.55684 1.36132 1.59938 1.48282 1.14808 1.36611 1.33195 1.21817 0.94543 0.89440 0.95721 1.22017 1.00616 0.97504 0.97241 1.21630 0.97839 0.99555 0.96011 1.18960 0.95135 0.92492 0.91245 0.95242 1.21039 1.37395 0.93419 1.03522 0.92553 1.24927 0.95921 0.94858 0.98020 1.69857 1.46206 1.06247 1.30468 0.86643 0.79914 0.79595 0.81769 1.20217 1.21299 1.20255 1.22009 0.97622 0.95191 0.85593 1.19331 0.96178 0.94171 0.94359 1.21232 1.00230 0.94141 0.97791 1.21008 0.96205 1.00020 0.93380 1.21153 1.01500 0.93249 1.01686 1.17617 0.94360 0.91173 0.88963 1.91501 1.72505 1.81096 1.66846 1.21036 1.00323 1.01197 0.94008 0.91522 0.91326 0.92009 0.91917 0.91211 0.92409 0.92330 0.88586 0.94593 0.92910 0.90267 0.92711 0.84717 0.84892 0.84857 0.84564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 8.50 37.16 0.32 -1.16 16 2 C -0.08 -0.99 2.11 -92.93 -0.20 -1.18 16 3 H 0.10 1.14 5.87 -51.93 -0.31 0.83 16 4 C 0.52 8.97 6.45 -10.99 -0.07 8.89 16 5 O -0.55 -11.19 15.59 5.56 0.09 -11.10 16 6 N -0.60 -10.87 2.97 -172.76 -0.51 -11.38 16 7 C 0.11 1.66 6.31 -3.71 -0.02 1.64 16 8 C -0.14 -2.37 6.08 -26.62 -0.16 -2.54 16 9 C -0.11 -2.50 4.96 -26.69 -0.13 -2.63 16 10 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 11 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 12 C -0.52 -13.88 8.56 -34.44 -0.29 -14.18 16 13 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 14 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 15 N -0.89 -24.81 11.31 55.43 0.63 -24.18 16 16 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.12 2.51 5.66 -3.71 -0.02 2.49 16 21 C -0.04 -0.47 4.76 -104.63 -0.50 -0.97 16 22 C -0.12 -1.34 8.76 -39.58 -0.35 -1.69 16 23 C -0.09 -0.86 10.04 -39.59 -0.40 -1.26 16 24 C -0.16 -1.55 10.03 -39.51 -0.40 -1.95 16 25 C 0.10 1.09 7.30 -39.42 -0.29 0.80 16 26 F -0.14 -1.64 17.27 2.25 0.04 -1.60 16 27 C -0.15 -1.61 9.37 -39.51 -0.37 -1.98 16 28 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 29 H 0.07 0.82 7.11 -51.93 -0.37 0.45 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.86 4.96 -51.93 -0.26 0.60 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.08 1.82 7.00 -51.93 -0.36 1.46 16 39 H 0.05 1.15 8.14 -51.92 -0.42 0.73 16 40 H 0.13 1.63 7.53 -52.48 -0.40 1.24 16 41 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 43 H 0.14 1.27 7.78 -52.49 -0.41 0.86 16 LS Contribution 348.04 15.07 5.24 5.24 Total: -1.00 -29.76 348.04 -8.90 -38.66 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.18 Total: 1.64 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -3.18 Total: -13.27 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.11 Total: -35.57 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.76 -8.90 -38.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.570 kcal (2) G-P(sol) polarization free energy of solvation -29.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds