Wall clock time and date at job start Tue Mar 31 2020 09:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47048 * 2 1 4 4 C 1.50698 * 109.47194 * 239.99898 * 2 1 3 5 5 O 1.21280 * 120.00046 * 336.60281 * 4 2 1 6 6 N 1.34776 * 119.99833 * 156.60677 * 4 2 1 7 7 C 1.46932 * 120.60677 * 355.58180 * 6 4 2 8 8 C 1.53188 * 108.76916 * 233.53466 * 7 6 4 9 9 C 1.53036 * 109.34039 * 305.41042 * 8 7 6 10 10 C 1.53037 * 109.53818 * 61.35014 * 9 8 7 11 11 H 1.08998 * 109.50062 * 58.62116 * 10 9 8 12 12 C 1.50709 * 109.49774 * 178.68686 * 10 9 8 13 13 H 1.08003 * 119.99841 * 120.00278 * 12 10 9 14 14 C 1.37874 * 119.99556 * 299.99751 * 12 10 9 15 15 N 1.31516 * 120.00632 * 0.02562 * 14 12 10 16 16 Si 1.86808 * 119.99721 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46877 * 60.00011 * 16 14 12 18 18 H 1.48498 * 109.47114 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46793 * 300.00364 * 16 14 12 20 20 C 1.46932 * 120.62801 * 175.55772 * 6 4 2 21 21 C 1.50696 * 109.46729 * 119.99829 * 2 1 3 22 22 C 1.38269 * 119.99012 * 59.73306 * 21 2 1 23 23 C 1.38220 * 120.05398 * 179.72740 * 22 21 2 24 24 C 1.38231 * 120.02440 * 0.54024 * 23 22 21 25 25 C 1.38433 * 119.96962 * 359.72853 * 24 23 22 26 26 F 1.35101 * 120.02396 * 180.02562 * 25 24 23 27 27 C 1.38181 * 119.98761 * 239.99992 * 21 2 1 28 28 H 1.09007 * 109.46753 * 64.90259 * 1 2 3 29 29 H 1.09000 * 109.47334 * 184.89845 * 1 2 3 30 30 H 1.08995 * 109.47376 * 304.90601 * 1 2 3 31 31 H 1.08995 * 109.56251 * 113.76247 * 7 6 4 32 32 H 1.09006 * 109.61469 * 353.33364 * 7 6 4 33 33 H 1.09007 * 109.49753 * 185.44177 * 8 7 6 34 34 H 1.09003 * 109.50347 * 65.37830 * 8 7 6 35 35 H 1.08997 * 109.46342 * 181.37603 * 9 8 7 36 36 H 1.09007 * 109.46370 * 301.33109 * 9 8 7 37 37 H 0.96999 * 120.00339 * 180.02562 * 15 14 12 38 38 H 1.08997 * 109.58819 * 6.64215 * 20 6 4 39 39 H 1.09009 * 109.70025 * 246.29194 * 20 6 4 40 40 H 1.08005 * 119.97302 * 359.97041 * 22 21 2 41 41 H 1.07995 * 119.98971 * 180.26874 * 23 22 21 42 42 H 1.08000 * 120.01303 * 179.75278 * 24 23 22 43 43 H 1.08000 * 120.00847 * 359.97438 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 1.3257 -1.5182 -1.7953 6 7 3.2670 -0.4482 -1.7031 7 6 4.0973 0.5963 -1.0879 8 6 4.5569 1.5675 -2.1798 9 6 5.2547 0.7840 -3.2939 10 6 4.2702 -0.2098 -3.9146 11 1 3.4084 0.3293 -4.3080 12 6 4.9489 -0.9581 -5.0330 13 1 5.0393 -2.0333 -4.9864 14 6 5.4540 -0.2700 -6.1157 15 7 5.3442 1.0393 -6.1724 16 14 6.2946 -1.1976 -7.5024 17 1 5.3384 -2.1613 -8.1041 18 1 6.7454 -0.2353 -8.5396 19 1 7.4675 -1.9336 -6.9658 20 6 3.8079 -1.2016 -2.8426 21 6 2.0322 -0.7104 1.2305 22 6 1.6935 -2.0325 1.4519 23 6 2.1580 -2.6870 2.5772 24 6 2.9528 -2.0170 3.4884 25 6 3.2880 -0.6917 3.2705 26 9 4.0652 -0.0359 4.1600 27 6 2.8266 -0.0386 2.1399 28 1 -0.3633 0.4359 -0.9307 29 1 -0.3634 -1.0239 0.0878 30 1 -0.3634 0.5880 0.8427 31 1 4.9669 0.1400 -0.6151 32 1 3.5137 1.1353 -0.3414 33 1 5.2518 2.2914 -1.7539 34 1 3.6925 2.0903 -2.5892 35 1 5.6041 1.4758 -4.0604 36 1 6.1048 0.2421 -2.8794 37 1 5.6993 1.5234 -6.9343 38 1 3.0333 -1.8491 -3.2534 39 1 4.6537 -1.8063 -2.5151 40 1 1.0686 -2.5554 0.7430 41 1 1.8964 -3.7209 2.7469 42 1 3.3124 -2.5274 4.3696 43 1 3.0879 0.9953 1.9687 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597908532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:10:47 Heat of formation + Delta-G solvation = -84.177165 kcal Electronic energy + Delta-G solvation = -25402.713841 eV Core-core repulsion = 21746.909761 eV Total energy + Delta-G solvation = -3655.804080 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.86559 -41.60308 -39.84837 -38.41167 -35.52672 -34.95155 -32.99754 -31.95780 -31.66700 -30.31767 -27.32930 -26.61362 -25.07376 -23.78888 -23.36144 -22.93143 -21.17123 -19.72319 -18.77829 -18.20871 -18.06117 -17.15925 -17.08503 -16.74745 -16.61357 -16.45066 -16.17163 -15.23754 -15.06119 -14.98304 -14.67050 -14.52605 -14.32825 -14.11725 -13.73761 -13.63864 -13.53715 -13.06755 -13.04145 -12.85454 -12.75127 -12.68133 -12.57918 -12.33434 -12.02480 -11.85680 -11.74417 -11.57768 -11.27631 -10.90153 -10.71535 -10.43080 -9.92075 -9.64392 -9.49589 -8.10876 -6.26232 0.12514 0.22301 1.41209 1.42535 1.49922 1.61536 2.07918 2.43400 2.59251 3.15563 3.21516 3.52422 3.62679 3.74344 3.98390 4.08734 4.13417 4.20604 4.22574 4.31021 4.34532 4.44926 4.53608 4.60083 4.74454 4.83138 4.85671 4.89364 4.93586 4.96817 5.07744 5.11372 5.13043 5.22805 5.27539 5.37000 5.45525 5.51468 5.55058 5.60504 5.90975 5.92658 6.12753 6.33970 6.55171 6.82866 7.19677 7.41930 8.92503 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.020969 B = 0.003601 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.993727 B = 7773.592218 C = 8080.794518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.065 4.065 3 H 0.125 0.875 4 C 0.512 3.488 5 O -0.586 6.586 6 N -0.604 5.604 7 C 0.110 3.890 8 C -0.128 4.128 9 C -0.106 4.106 10 C 0.042 3.958 11 H -0.013 1.013 12 C -0.540 4.540 13 H 0.051 0.949 14 C 0.019 3.981 15 N -0.912 5.912 16 Si 0.954 3.046 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.268 1.268 20 C 0.130 3.870 21 C -0.051 4.051 22 C -0.129 4.129 23 C -0.087 4.087 24 C -0.153 4.153 25 C 0.086 3.914 26 F -0.145 7.145 27 C -0.144 4.144 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.035 0.965 37 H 0.262 0.738 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.121 0.879 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.053 -0.359 20.957 21.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.086 4.086 3 H 0.143 0.857 4 C 0.301 3.699 5 O -0.466 6.466 6 N -0.335 5.335 7 C -0.012 4.012 8 C -0.166 4.166 9 C -0.144 4.144 10 C 0.023 3.977 11 H 0.005 0.995 12 C -0.578 4.578 13 H 0.070 0.930 14 C -0.181 4.181 15 N -0.551 5.551 16 Si 0.779 3.221 17 H -0.201 1.201 18 H -0.207 1.207 19 H -0.193 1.193 20 C 0.008 3.992 21 C -0.051 4.051 22 C -0.148 4.148 23 C -0.104 4.104 24 C -0.171 4.171 25 C 0.067 3.933 26 F -0.123 7.123 27 C -0.162 4.162 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.139 0.861 41 H 0.174 0.826 42 H 0.173 0.827 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.329 -0.597 20.582 21.269 hybrid contribution 0.650 -0.326 -1.320 1.507 sum -4.679 -0.923 19.262 19.843 Atomic orbital electron populations 1.21660 0.90684 1.03188 1.02921 1.20386 0.98996 1.00516 0.88725 0.85744 1.21084 0.80601 0.82430 0.85782 1.90634 1.56623 1.37953 1.61422 1.48347 1.15675 1.37094 1.32349 1.22011 0.95342 0.88448 0.95400 1.21927 1.00429 0.97926 0.96334 1.21422 0.97533 0.98679 0.96761 1.18860 0.93922 0.93135 0.91801 0.99469 1.21416 1.37908 0.93521 1.05001 0.93033 1.25668 0.96502 0.95669 1.00226 1.69994 1.46735 1.07406 1.31010 0.85680 0.79017 0.78434 0.78937 1.20137 1.20733 1.19335 1.21536 0.96904 0.94467 0.86309 1.19217 0.97295 0.94317 0.94292 1.21297 1.00624 0.94471 0.98381 1.21246 0.95604 1.01055 0.92534 1.21440 1.00574 0.92957 1.02137 1.17795 0.94699 0.91708 0.89145 1.91495 1.72656 1.81232 1.66966 1.21165 0.99490 1.02044 0.93532 0.92689 0.92297 0.89007 0.90545 0.87175 0.89177 0.93399 0.91861 0.94615 0.92915 0.92779 0.92337 0.86051 0.82646 0.82715 0.82633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 8.50 71.98 0.61 -2.13 16 2 C -0.07 -1.53 2.11 -12.29 -0.03 -1.56 16 3 H 0.12 2.31 5.87 -2.39 -0.01 2.30 16 4 C 0.51 17.56 6.45 87.66 0.57 18.13 16 5 O -0.59 -24.71 15.59 -3.03 -0.05 -24.76 16 6 N -0.60 -21.66 2.97 -818.88 -2.43 -24.10 16 7 C 0.11 3.09 6.31 86.36 0.54 3.63 16 8 C -0.13 -4.29 6.08 30.67 0.19 -4.10 16 9 C -0.11 -4.76 4.96 30.62 0.15 -4.60 16 10 C 0.04 2.13 2.25 -11.46 -0.03 2.10 16 11 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 12 C -0.54 -30.09 8.56 25.60 0.22 -29.87 16 13 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 14 C 0.02 1.03 5.30 84.65 0.45 1.48 16 15 N -0.91 -52.25 11.31 21.45 0.24 -52.01 16 16 Si 0.95 43.69 29.54 68.60 2.03 45.71 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 C 0.13 5.77 5.66 86.36 0.49 6.26 16 21 C -0.05 -1.07 4.76 -19.87 -0.09 -1.17 16 22 C -0.13 -2.80 8.76 22.27 0.20 -2.61 16 23 C -0.09 -1.49 10.04 22.26 0.22 -1.26 16 24 C -0.15 -2.54 10.03 22.31 0.22 -2.31 16 25 C 0.09 1.63 7.30 22.37 0.16 1.80 16 26 F -0.14 -2.93 17.27 44.97 0.78 -2.16 16 27 C -0.14 -2.65 9.37 22.31 0.21 -2.44 16 28 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.06 1.38 7.11 -2.39 -0.02 1.36 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.11 2.24 4.96 -2.38 -0.01 2.23 16 33 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 3.27 6.04 -2.39 -0.01 3.26 16 36 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 38 H 0.05 2.62 7.00 -2.39 -0.02 2.61 16 39 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 40 H 0.12 2.93 7.53 -2.91 -0.02 2.91 16 41 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 42 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 43 H 0.16 2.18 7.78 -2.91 -0.02 2.16 16 Total: -1.00 -67.57 348.04 5.66 -61.91 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 1.01 Total: 14.05 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 4.09 Total: -18.65 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -2.19 Total: -76.11 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.05 Total: -24.76 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.78 Total: -2.16 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -67.57 5.66 -61.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.266 kcal (2) G-P(sol) polarization free energy of solvation -67.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds