Wall clock time and date at job start Tue Mar 31 2020 09:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47190 * 2 1 4 4 C 1.50700 * 109.47295 * 239.99974 * 2 1 3 5 5 O 1.21281 * 119.99918 * 335.17035 * 4 2 1 6 6 N 1.34773 * 119.99947 * 155.16403 * 4 2 1 7 7 C 1.46920 * 120.63452 * 355.08979 * 6 4 2 8 8 C 1.53195 * 108.77655 * 126.40752 * 7 6 4 9 9 C 1.53039 * 109.30904 * 54.63942 * 8 7 6 10 10 C 1.53039 * 109.54040 * 298.63191 * 9 8 7 11 11 H 1.08999 * 109.50026 * 301.38495 * 10 9 8 12 12 C 1.50695 * 109.50258 * 181.31712 * 10 9 8 13 13 H 1.08003 * 120.00100 * 240.00244 * 12 10 9 14 14 C 1.37879 * 119.99816 * 59.72383 * 12 10 9 15 15 N 1.31516 * 120.00082 * 0.27891 * 14 12 10 16 16 Si 1.86800 * 119.99878 * 180.27796 * 14 12 10 17 17 H 1.48494 * 109.47150 * 90.00212 * 16 14 12 18 18 H 1.48507 * 109.47056 * 209.99915 * 16 14 12 19 19 H 1.48499 * 109.47185 * 329.99832 * 16 14 12 20 20 C 1.46931 * 120.62585 * 175.10927 * 6 4 2 21 21 C 1.50705 * 109.47094 * 119.99931 * 2 1 3 22 22 C 1.38216 * 120.01053 * 60.00305 * 21 2 1 23 23 C 1.38223 * 120.02147 * 179.97438 * 22 21 2 24 24 C 1.38272 * 120.05371 * 0.02562 * 23 22 21 25 25 C 1.38175 * 120.02410 * 359.97438 * 24 23 22 26 26 C 1.38437 * 120.01079 * 239.72049 * 21 2 1 27 27 F 1.35102 * 120.02652 * 0.02562 * 26 21 2 28 28 H 1.08996 * 109.47205 * 184.92866 * 1 2 3 29 29 H 1.09006 * 109.47202 * 304.92274 * 1 2 3 30 30 H 1.08997 * 109.47449 * 64.92728 * 1 2 3 31 31 H 1.09001 * 109.58273 * 6.62550 * 7 6 4 32 32 H 1.08997 * 109.59290 * 246.19970 * 7 6 4 33 33 H 1.08994 * 109.49992 * 294.68875 * 8 7 6 34 34 H 1.09004 * 109.49544 * 174.58805 * 8 7 6 35 35 H 1.09003 * 109.46000 * 178.61556 * 9 8 7 36 36 H 1.09003 * 109.46286 * 58.65597 * 9 8 7 37 37 H 0.96997 * 120.00063 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.58178 * 113.80598 * 20 6 4 39 39 H 1.08992 * 109.58756 * 353.37933 * 20 6 4 40 40 H 1.08003 * 119.99025 * 359.97438 * 22 21 2 41 41 H 1.08009 * 119.97155 * 179.97438 * 23 22 21 42 42 H 1.07994 * 119.98426 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00967 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 1.3358 -1.5371 -1.7802 6 7 3.2556 -0.4269 -1.7200 7 6 4.0675 0.6465 -1.1308 8 6 5.4408 0.0786 -0.7588 9 6 6.0670 -0.5790 -1.9907 10 6 5.1789 -1.7327 -2.4622 11 1 5.0668 -2.4583 -1.6566 12 6 5.8124 -2.4001 -3.6556 13 1 5.2862 -2.4336 -4.5981 14 6 7.0663 -2.9628 -3.5457 15 7 7.7072 -2.9219 -2.3980 16 14 7.8549 -3.7832 -5.0271 17 1 8.6437 -2.7804 -5.7868 18 1 8.7518 -4.8748 -4.5693 19 1 6.7963 -4.3469 -5.9027 20 6 3.8025 -1.1854 -2.8534 21 6 2.0323 -0.7104 1.2305 22 6 1.6986 -2.0337 1.4494 23 6 2.1597 -2.6856 2.5777 24 6 2.9546 -2.0149 3.4888 25 6 3.2895 -0.6920 3.2719 26 6 2.8330 -0.0395 2.1390 27 9 3.1641 1.2524 1.9233 28 1 -0.3633 -1.0238 0.0883 29 1 -0.3634 0.5883 0.8426 30 1 -0.3634 0.4355 -0.9308 31 1 3.5753 1.0277 -0.2360 32 1 4.1891 1.4522 -1.8547 33 1 5.3258 -0.6637 0.0309 34 1 6.0856 0.8851 -0.4097 35 1 7.0549 -0.9624 -1.7351 36 1 6.1590 0.1580 -2.7886 37 1 8.5892 -3.3181 -2.3206 38 1 3.9025 -0.5291 -3.7179 39 1 3.1355 -2.0127 -3.0953 40 1 1.0774 -2.5585 0.7387 41 1 1.8980 -3.7196 2.7482 42 1 3.3139 -2.5253 4.3701 43 1 3.9101 -0.1683 3.9839 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597913945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:10:55 Heat of formation + Delta-G solvation = -67.662130 kcal Electronic energy + Delta-G solvation = -26152.767718 eV Core-core repulsion = 22497.679783 eV Total energy + Delta-G solvation = -3655.087935 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.98151 -40.18607 -38.69881 -36.83814 -34.22639 -33.35508 -31.29556 -30.59869 -30.17054 -29.40471 -25.65006 -24.97676 -23.91418 -22.69811 -21.87014 -21.55820 -19.56349 -18.24794 -17.67448 -17.23221 -16.38017 -16.17389 -15.77375 -15.66045 -15.08362 -14.72093 -14.48028 -14.11514 -13.69822 -13.55342 -13.43026 -13.14816 -12.75533 -12.70927 -12.64346 -12.26090 -12.11505 -11.96738 -11.86952 -11.81092 -11.17330 -10.97674 -10.95177 -10.80030 -10.70498 -10.25280 -9.93998 -9.81770 -9.53822 -9.35862 -8.94171 -8.81811 -8.61716 -8.38319 -7.88739 -6.01738 -4.09019 1.08463 1.17729 2.97755 3.29417 3.36191 3.39601 3.47415 3.62336 4.20097 4.42387 4.55141 4.64311 4.83121 4.90348 5.07553 5.17197 5.23902 5.27892 5.34096 5.48404 5.66801 5.69667 5.77977 5.85908 5.89224 6.01331 6.04649 6.13412 6.17880 6.32173 6.35605 6.38016 6.41853 6.50532 6.66854 6.82063 6.83759 6.97447 7.18242 7.34593 7.69236 7.91740 8.01463 8.08080 8.37346 8.62219 8.94607 9.55798 11.03632 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016985 B = 0.004603 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.148228 B = 6081.421659 C = 6441.131555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.077 4.077 3 H 0.101 0.899 4 C 0.519 3.481 5 O -0.548 6.548 6 N -0.598 5.598 7 C 0.102 3.898 8 C -0.131 4.131 9 C -0.112 4.112 10 C 0.041 3.959 11 H 0.028 0.972 12 C -0.514 4.514 13 H 0.057 0.943 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.117 3.883 21 C -0.104 4.104 22 C -0.076 4.076 23 C -0.126 4.126 24 C -0.092 4.092 25 C -0.153 4.153 26 C 0.105 3.895 27 F -0.137 7.137 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.035 0.965 37 H 0.260 0.740 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.002 6.877 12.017 17.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.098 4.098 3 H 0.119 0.881 4 C 0.305 3.695 5 O -0.426 6.426 6 N -0.329 5.329 7 C -0.021 4.021 8 C -0.169 4.169 9 C -0.150 4.150 10 C 0.022 3.978 11 H 0.047 0.953 12 C -0.552 4.552 13 H 0.075 0.925 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.004 4.004 21 C -0.105 4.105 22 C -0.094 4.094 23 C -0.144 4.144 24 C -0.110 4.110 25 C -0.171 4.171 26 C 0.085 3.915 27 F -0.115 7.115 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.173 6.435 11.773 16.838 hybrid contribution 0.855 -0.113 -0.747 1.141 sum -9.318 6.322 11.026 15.759 Atomic orbital electron populations 1.21625 0.91492 1.03240 1.02018 1.20293 0.98308 1.00230 0.90965 0.88122 1.20194 0.81529 0.83009 0.84722 1.90643 1.56118 1.35056 1.60828 1.48287 1.15464 1.35172 1.33959 1.21890 0.93067 0.89405 0.97759 1.21955 0.94541 0.99741 1.00700 1.21633 1.02953 0.96953 0.93465 1.18960 0.88519 0.93391 0.96906 0.95342 1.21074 1.01660 1.35962 0.96529 0.92491 1.24935 0.97123 0.95878 0.95850 1.69875 1.13824 1.45127 1.23912 0.86583 0.79275 0.79170 0.82925 1.20686 1.21248 1.19852 1.22019 0.97547 0.94805 0.86002 1.19486 0.99939 0.95421 0.95668 1.21044 0.98430 0.92826 0.97130 1.21214 0.98411 1.00377 0.94421 1.21020 0.97063 0.93474 0.99458 1.21084 1.02696 0.96039 0.97320 1.17484 0.98794 0.79115 0.96077 1.91453 1.90931 1.34544 1.94587 0.91272 0.92092 0.91757 0.90730 0.91905 0.92583 0.92547 0.88602 0.94610 0.92993 0.92693 0.90348 0.84541 0.85230 0.85066 0.84719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 8.52 37.16 0.32 -1.23 16 2 C -0.08 -1.10 2.11 -92.92 -0.20 -1.30 16 3 H 0.10 1.34 5.42 -51.93 -0.28 1.06 16 4 C 0.52 9.53 6.43 -10.99 -0.07 9.46 16 5 O -0.55 -11.55 15.63 5.56 0.09 -11.46 16 6 N -0.60 -11.48 2.97 -172.77 -0.51 -12.00 16 7 C 0.10 1.71 6.27 -3.71 -0.02 1.69 16 8 C -0.13 -2.47 6.08 -26.61 -0.16 -2.63 16 9 C -0.11 -2.57 4.96 -26.69 -0.13 -2.70 16 10 C 0.04 1.03 2.25 -91.65 -0.21 0.82 16 11 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 12 C -0.51 -13.99 8.57 -34.44 -0.30 -14.29 16 13 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 14 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 15 N -0.89 -25.05 11.30 55.43 0.63 -24.43 16 16 Si 0.89 21.17 29.54 -169.99 -5.02 16.14 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.12 2.59 5.64 -3.70 -0.02 2.57 16 21 C -0.10 -1.46 4.71 -104.55 -0.49 -1.95 16 22 C -0.08 -1.04 8.76 -39.60 -0.35 -1.39 16 23 C -0.13 -1.46 10.04 -39.57 -0.40 -1.86 16 24 C -0.09 -0.99 10.04 -39.59 -0.40 -1.38 16 25 C -0.15 -1.77 10.03 -39.51 -0.40 -2.16 16 26 C 0.10 1.39 7.00 -39.42 -0.28 1.12 16 27 F -0.14 -1.82 14.70 2.25 0.03 -1.78 16 28 H 0.07 0.87 7.12 -51.93 -0.37 0.50 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.11 3.49 -51.93 -0.18 0.93 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.10 2.48 6.03 -51.93 -0.31 2.17 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.84 7.03 -51.93 -0.37 1.48 16 40 H 0.14 1.91 7.55 -52.48 -0.40 1.51 16 41 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 42 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 43 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 344.18 15.07 5.19 5.19 Total: -1.00 -30.09 344.18 -8.89 -38.98 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.10 Total: 2.95 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -3.19 Total: -13.58 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.11 Total: -36.42 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.03 Total: -1.78 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.09 -8.89 -38.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597913945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.685 kcal (2) G-P(sol) polarization free energy of solvation -30.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds