Wall clock time and date at job start Tue Mar 31 2020 09:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47190 * 2 1 4 4 C 1.50700 * 109.47295 * 239.99974 * 2 1 3 5 5 O 1.21281 * 119.99918 * 335.17035 * 4 2 1 6 6 N 1.34773 * 119.99947 * 155.16403 * 4 2 1 7 7 C 1.46920 * 120.63452 * 355.08979 * 6 4 2 8 8 C 1.53195 * 108.77655 * 126.40752 * 7 6 4 9 9 C 1.53039 * 109.30904 * 54.63942 * 8 7 6 10 10 C 1.53039 * 109.54040 * 298.63191 * 9 8 7 11 11 H 1.08999 * 109.50026 * 301.38495 * 10 9 8 12 12 C 1.50695 * 109.50258 * 181.31712 * 10 9 8 13 13 H 1.08003 * 120.00100 * 240.00244 * 12 10 9 14 14 C 1.37879 * 119.99816 * 59.72383 * 12 10 9 15 15 N 1.31516 * 120.00082 * 0.27891 * 14 12 10 16 16 Si 1.86800 * 119.99878 * 180.27796 * 14 12 10 17 17 H 1.48494 * 109.47150 * 90.00212 * 16 14 12 18 18 H 1.48507 * 109.47056 * 209.99915 * 16 14 12 19 19 H 1.48499 * 109.47185 * 329.99832 * 16 14 12 20 20 C 1.46931 * 120.62585 * 175.10927 * 6 4 2 21 21 C 1.50705 * 109.47094 * 119.99931 * 2 1 3 22 22 C 1.38216 * 120.01053 * 60.00305 * 21 2 1 23 23 C 1.38223 * 120.02147 * 179.97438 * 22 21 2 24 24 C 1.38272 * 120.05371 * 0.02562 * 23 22 21 25 25 C 1.38175 * 120.02410 * 359.97438 * 24 23 22 26 26 C 1.38437 * 120.01079 * 239.72049 * 21 2 1 27 27 F 1.35102 * 120.02652 * 0.02562 * 26 21 2 28 28 H 1.08996 * 109.47205 * 184.92866 * 1 2 3 29 29 H 1.09006 * 109.47202 * 304.92274 * 1 2 3 30 30 H 1.08997 * 109.47449 * 64.92728 * 1 2 3 31 31 H 1.09001 * 109.58273 * 6.62550 * 7 6 4 32 32 H 1.08997 * 109.59290 * 246.19970 * 7 6 4 33 33 H 1.08994 * 109.49992 * 294.68875 * 8 7 6 34 34 H 1.09004 * 109.49544 * 174.58805 * 8 7 6 35 35 H 1.09003 * 109.46000 * 178.61556 * 9 8 7 36 36 H 1.09003 * 109.46286 * 58.65597 * 9 8 7 37 37 H 0.96997 * 120.00063 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.58178 * 113.80598 * 20 6 4 39 39 H 1.08992 * 109.58756 * 353.37933 * 20 6 4 40 40 H 1.08003 * 119.99025 * 359.97438 * 22 21 2 41 41 H 1.08009 * 119.97155 * 179.97438 * 23 22 21 42 42 H 1.07994 * 119.98426 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00967 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 1.3358 -1.5371 -1.7802 6 7 3.2556 -0.4269 -1.7200 7 6 4.0675 0.6465 -1.1308 8 6 5.4408 0.0786 -0.7588 9 6 6.0670 -0.5790 -1.9907 10 6 5.1789 -1.7327 -2.4622 11 1 5.0668 -2.4583 -1.6566 12 6 5.8124 -2.4001 -3.6556 13 1 5.2862 -2.4336 -4.5981 14 6 7.0663 -2.9628 -3.5457 15 7 7.7072 -2.9219 -2.3980 16 14 7.8549 -3.7832 -5.0271 17 1 8.6437 -2.7804 -5.7868 18 1 8.7518 -4.8748 -4.5693 19 1 6.7963 -4.3469 -5.9027 20 6 3.8025 -1.1854 -2.8534 21 6 2.0323 -0.7104 1.2305 22 6 1.6986 -2.0337 1.4494 23 6 2.1597 -2.6856 2.5777 24 6 2.9546 -2.0149 3.4888 25 6 3.2895 -0.6920 3.2719 26 6 2.8330 -0.0395 2.1390 27 9 3.1641 1.2524 1.9233 28 1 -0.3633 -1.0238 0.0883 29 1 -0.3634 0.5883 0.8426 30 1 -0.3634 0.4355 -0.9308 31 1 3.5753 1.0277 -0.2360 32 1 4.1891 1.4522 -1.8547 33 1 5.3258 -0.6637 0.0309 34 1 6.0856 0.8851 -0.4097 35 1 7.0549 -0.9624 -1.7351 36 1 6.1590 0.1580 -2.7886 37 1 8.5892 -3.3181 -2.3206 38 1 3.9025 -0.5291 -3.7179 39 1 3.1355 -2.0127 -3.0953 40 1 1.0774 -2.5585 0.7387 41 1 1.8980 -3.7196 2.7482 42 1 3.3139 -2.5253 4.3701 43 1 3.9101 -0.1683 3.9839 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597913945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:10:55 Heat of formation + Delta-G solvation = -82.844863 kcal Electronic energy + Delta-G solvation = -26153.426091 eV Core-core repulsion = 22497.679783 eV Total energy + Delta-G solvation = -3655.746307 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.96924 -41.55299 -39.82027 -38.46823 -35.57775 -35.05749 -33.03502 -32.00554 -31.48697 -30.39357 -27.35537 -26.63982 -25.19655 -23.70072 -23.44011 -22.88904 -21.20107 -19.72604 -18.75200 -18.62795 -18.15647 -17.34219 -17.00435 -16.81180 -16.63210 -16.28247 -15.86178 -15.18944 -15.10627 -15.07389 -14.83503 -14.49646 -14.33051 -14.14497 -13.89104 -13.67673 -13.46511 -13.15687 -13.03471 -12.89572 -12.86138 -12.69526 -12.58000 -12.19836 -11.94985 -11.92216 -11.81878 -11.63997 -11.32078 -10.93432 -10.74554 -10.44174 -9.91508 -9.63134 -9.53613 -8.11476 -6.26980 0.12407 0.23166 1.40529 1.41435 1.51376 1.55347 2.05420 2.42912 2.61306 3.14862 3.22983 3.45242 3.52831 3.74893 3.90041 4.00341 4.13646 4.17541 4.23619 4.31058 4.37324 4.41863 4.49446 4.57869 4.73474 4.77654 4.81292 4.85463 4.91694 4.94487 5.06057 5.07661 5.13351 5.20260 5.24808 5.36057 5.44939 5.46247 5.50543 5.59295 5.90041 5.91937 6.10100 6.32197 6.49065 6.81917 7.13469 7.41222 8.92308 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016985 B = 0.004603 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.148228 B = 6081.421659 C = 6441.131555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.067 4.067 3 H 0.115 0.885 4 C 0.514 3.486 5 O -0.582 6.582 6 N -0.604 5.604 7 C 0.105 3.895 8 C -0.121 4.121 9 C -0.104 4.104 10 C 0.045 3.955 11 H -0.014 1.014 12 C -0.538 4.538 13 H 0.052 0.948 14 C 0.018 3.982 15 N -0.913 5.913 16 Si 0.956 3.044 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.272 1.272 20 C 0.130 3.870 21 C -0.120 4.120 22 C -0.097 4.097 23 C -0.130 4.130 24 C -0.087 4.087 25 C -0.153 4.153 26 C 0.092 3.908 27 F -0.137 7.137 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.038 0.962 37 H 0.262 0.738 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.122 0.878 41 H 0.149 0.851 42 H 0.165 0.835 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.875 8.112 13.327 18.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.088 4.088 3 H 0.133 0.867 4 C 0.303 3.697 5 O -0.462 6.462 6 N -0.335 5.335 7 C -0.017 4.017 8 C -0.159 4.159 9 C -0.142 4.142 10 C 0.025 3.975 11 H 0.004 0.996 12 C -0.576 4.576 13 H 0.071 0.929 14 C -0.181 4.181 15 N -0.552 5.552 16 Si 0.781 3.219 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.197 1.197 20 C 0.008 3.992 21 C -0.122 4.122 22 C -0.115 4.115 23 C -0.148 4.148 24 C -0.105 4.105 25 C -0.172 4.172 26 C 0.073 3.927 27 F -0.116 7.116 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.140 0.860 41 H 0.167 0.833 42 H 0.182 0.818 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.053 7.693 13.097 18.215 hybrid contribution 0.815 -0.567 -1.098 1.481 sum -9.238 7.126 11.999 16.736 Atomic orbital electron populations 1.21631 0.90051 1.03194 1.03121 1.20277 0.99492 1.00174 0.88884 0.86680 1.20987 0.80801 0.82540 0.85377 1.90618 1.57031 1.36577 1.61997 1.48347 1.16200 1.35520 1.33429 1.22036 0.91590 0.88855 0.99243 1.21834 0.96071 0.99947 0.98097 1.21425 1.01150 0.96305 0.95357 1.18838 0.90493 0.93275 0.94856 0.99628 1.21414 1.02231 1.36842 0.97138 0.92927 1.25686 0.97568 0.96360 0.98500 1.70009 1.14040 1.45560 1.25566 0.85595 0.78299 0.78317 0.79682 1.19681 1.20858 1.19656 1.21598 0.95575 0.94622 0.87454 1.19490 1.01058 0.95743 0.95887 1.21091 0.99288 0.93129 0.97985 1.21526 0.98070 1.01394 0.93820 1.21437 0.95802 0.93251 0.99992 1.21457 1.02269 0.96445 0.97004 1.17633 0.99099 0.79253 0.96726 1.91441 1.90961 1.34530 1.94659 0.92252 0.89429 0.91815 0.88242 0.89865 0.94218 0.89617 0.91684 0.94344 0.92903 0.92026 0.92657 0.86005 0.83299 0.81778 0.82322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.88 8.52 71.98 0.61 -2.27 16 2 C -0.07 -1.86 2.11 -12.28 -0.03 -1.89 16 3 H 0.12 2.81 5.42 -2.39 -0.01 2.79 16 4 C 0.51 19.01 6.43 87.66 0.56 19.58 16 5 O -0.58 -25.32 15.63 -3.03 -0.05 -25.36 16 6 N -0.60 -23.22 2.97 -818.90 -2.43 -25.65 16 7 C 0.10 3.34 6.27 86.36 0.54 3.88 16 8 C -0.12 -4.45 6.08 30.67 0.19 -4.26 16 9 C -0.10 -4.83 4.96 30.62 0.15 -4.68 16 10 C 0.04 2.30 2.25 -11.46 -0.03 2.27 16 11 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 12 C -0.54 -30.13 8.57 25.60 0.22 -29.91 16 13 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 14 C 0.02 1.00 5.30 84.65 0.45 1.45 16 15 N -0.91 -52.51 11.30 21.45 0.24 -52.27 16 16 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 C 0.13 5.90 5.64 86.36 0.49 6.39 16 21 C -0.12 -3.27 4.71 -19.82 -0.09 -3.36 16 22 C -0.10 -2.62 8.76 22.26 0.20 -2.43 16 23 C -0.13 -2.84 10.04 22.27 0.22 -2.62 16 24 C -0.09 -1.63 10.04 22.26 0.22 -1.40 16 25 C -0.15 -3.13 10.03 22.31 0.22 -2.90 16 26 C 0.09 2.27 7.00 22.38 0.16 2.43 16 27 F -0.14 -3.30 14.70 44.97 0.66 -2.63 16 28 H 0.06 1.50 7.12 -2.39 -0.02 1.49 16 29 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.10 2.71 3.49 -2.39 -0.01 2.70 16 32 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 35 H 0.06 3.43 6.03 -2.39 -0.01 3.42 16 36 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 38 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.05 2.73 7.03 -2.39 -0.02 2.72 16 40 H 0.12 3.57 7.55 -2.91 -0.02 3.55 16 41 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 42 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 43 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -67.25 344.18 5.55 -61.70 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 1.01 Total: 18.11 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 4.09 Total: -19.72 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -2.19 Total: -77.92 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.05 Total: -25.36 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.66 Total: -2.63 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -67.25 5.55 -61.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597913945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.148 kcal (2) G-P(sol) polarization free energy of solvation -67.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds