Wall clock time and date at job start Tue Mar 31 2020 08:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46817 * 2 1 4 4 C 1.53002 * 109.47370 * 179.97438 * 3 2 1 5 5 H 1.09010 * 115.54614 * 29.33428 * 4 3 2 6 6 C 1.52999 * 117.50351 * 243.62451 * 4 3 2 7 7 C 1.52994 * 117.50245 * 174.99603 * 4 3 2 8 8 H 1.09006 * 117.50024 * 0.02562 * 7 4 3 9 9 C 1.50695 * 117.50326 * 215.00811 * 7 4 3 10 10 O 1.21288 * 119.99911 * 354.95395 * 9 7 4 11 11 N 1.34780 * 120.00352 * 174.95821 * 9 7 4 12 12 C 1.37118 * 119.99506 * 5.31328 * 11 9 7 13 13 H 1.07997 * 120.00685 * 5.27528 * 12 11 9 14 14 C 1.38885 * 119.99658 * 185.27427 * 12 11 9 15 15 N 1.31427 * 120.00193 * 354.68096 * 14 12 11 16 16 Si 1.86806 * 119.99846 * 174.68565 * 14 12 11 17 17 H 1.48501 * 109.47126 * 90.00104 * 16 14 12 18 18 H 1.48497 * 109.46708 * 209.99859 * 16 14 12 19 19 H 1.48498 * 109.47084 * 329.99725 * 16 14 12 20 20 C 1.39836 * 119.99795 * 185.31556 * 11 9 7 21 21 C 1.38977 * 120.05519 * 90.00338 * 20 11 9 22 22 C 1.38039 * 119.94686 * 179.97438 * 21 20 11 23 23 C 1.38540 * 120.05587 * 359.97438 * 22 21 20 24 24 F 1.35096 * 119.94397 * 180.02562 * 23 22 21 25 25 C 1.38493 * 120.10011 * 0.02562 * 23 22 21 26 26 C 1.38080 * 120.05919 * 359.70067 * 25 23 22 27 27 C 1.50693 * 120.03395 * 180.30072 * 26 25 23 28 28 H 1.09004 * 109.47556 * 60.00232 * 1 2 3 29 29 H 1.09005 * 109.46706 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47117 * 299.99848 * 1 2 3 31 31 H 1.08993 * 109.47065 * 240.00334 * 2 1 3 32 32 H 1.08998 * 109.46890 * 119.99644 * 2 1 3 33 33 H 1.09006 * 109.47153 * 60.00174 * 3 2 1 34 34 H 1.08996 * 109.47504 * 300.00172 * 3 2 1 35 35 H 1.09002 * 117.49977 * 145.01736 * 6 4 3 36 36 H 1.09000 * 117.49706 * 359.97438 * 6 4 3 37 37 H 0.96999 * 119.99951 * 184.99743 * 15 14 12 38 38 H 1.08008 * 120.02195 * 359.97438 * 21 20 11 39 39 H 1.08002 * 119.96865 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.97027 * 179.97438 * 25 23 22 41 41 H 1.08997 * 109.47083 * 270.25591 * 27 26 25 42 42 H 1.09003 * 109.47105 * 30.25298 * 27 26 25 43 43 H 1.09003 * 109.47811 * 150.25114 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 1 4.0403 0.5852 -0.4809 6 6 4.2759 2.0458 1.2167 7 6 4.2764 2.7946 -0.1176 8 1 3.6511 3.6841 -0.1955 9 6 5.5691 2.8390 -0.8907 10 8 6.0590 1.8128 -1.3126 11 7 6.1811 4.0190 -1.1134 12 6 5.6874 5.1652 -0.5452 13 1 4.8610 5.1118 0.1479 14 6 6.2503 6.3949 -0.8611 15 7 7.3208 6.4518 -1.6215 16 14 5.4860 7.9682 -0.2051 17 1 6.0958 8.3054 1.1062 18 1 5.7312 9.0749 -1.1644 19 1 4.0234 7.7747 -0.0359 20 6 7.3193 4.0744 -1.9238 21 6 7.1902 4.2807 -3.2920 22 6 8.3154 4.3355 -4.0899 23 6 9.5727 4.1855 -3.5276 24 9 10.6723 4.2400 -4.3104 25 6 9.7038 3.9798 -2.1643 26 6 8.5816 3.9299 -1.3613 27 6 8.7253 3.7127 0.1230 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 5.2109 1.5851 1.5356 36 1 3.6504 2.4429 2.0161 37 1 7.7564 7.3033 -1.7829 38 1 6.2103 4.3981 -3.7308 39 1 8.2155 4.4954 -5.1533 40 1 10.6849 3.8627 -1.7282 41 1 8.7073 2.6442 0.3373 42 1 9.6711 4.1354 0.4621 43 1 7.9016 4.2016 0.6433 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602391667.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:55 Heat of formation + Delta-G solvation = -45.966199 kcal Electronic energy + Delta-G solvation = -25400.762467 eV Core-core repulsion = 21746.615339 eV Total energy + Delta-G solvation = -3654.147129 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.69482 -41.43315 -39.59785 -37.79900 -36.49009 -34.62273 -33.57553 -33.33136 -30.59411 -28.37126 -27.87945 -26.75204 -25.16532 -23.18596 -22.75840 -22.22430 -21.34874 -20.82834 -19.26593 -18.21107 -17.95581 -17.41091 -16.69095 -16.40034 -16.32112 -15.94349 -15.61822 -15.42266 -15.08687 -14.88044 -14.29603 -14.20746 -14.08908 -14.07986 -13.69455 -13.67112 -13.24986 -12.99684 -12.92361 -12.89001 -12.69753 -12.43381 -12.21848 -12.12583 -12.07675 -11.97479 -11.86682 -11.59851 -11.24946 -11.00143 -10.74135 -10.43305 -9.96249 -9.56857 -9.33193 -7.91166 -5.89908 0.55481 0.59498 1.41732 1.49828 1.59017 1.83078 2.27017 2.76502 2.92719 3.01412 3.27876 3.49519 3.81355 3.97209 3.98514 4.07223 4.11666 4.27398 4.34870 4.36026 4.48550 4.53151 4.63544 4.70350 4.74646 4.79174 4.89919 4.94300 4.95551 4.98558 5.06047 5.12330 5.20560 5.25185 5.32150 5.40515 5.43470 5.44989 5.47095 5.54179 5.58177 5.76548 5.93066 6.16936 6.56258 7.13112 7.52536 7.94269 8.76708 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013196 B = 0.004822 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.319966 B = 5804.911998 C = 7048.666417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.082 4.082 4 C -0.118 4.118 5 H 0.089 0.911 6 C -0.136 4.136 7 C -0.176 4.176 8 H 0.125 0.875 9 C 0.483 3.517 10 O -0.630 6.630 11 N -0.421 5.421 12 C -0.349 4.349 13 H 0.120 0.880 14 C -0.001 4.001 15 N -0.877 5.877 16 Si 0.987 3.013 17 H -0.276 1.276 18 H -0.291 1.291 19 H -0.259 1.259 20 C 0.236 3.764 21 C -0.090 4.090 22 C -0.150 4.150 23 C 0.058 3.942 24 F -0.152 7.152 25 C -0.150 4.150 26 C -0.065 4.065 27 C -0.092 4.092 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.267 0.733 38 H 0.105 0.895 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.869 -4.148 4.362 9.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.119 4.119 4 C -0.137 4.137 5 H 0.107 0.893 6 C -0.173 4.173 7 C -0.197 4.197 8 H 0.143 0.857 9 C 0.275 3.725 10 O -0.518 6.518 11 N -0.136 5.136 12 C -0.475 4.475 13 H 0.137 0.863 14 C -0.204 4.204 15 N -0.514 5.514 16 Si 0.811 3.189 17 H -0.201 1.201 18 H -0.217 1.217 19 H -0.182 1.182 20 C 0.145 3.855 21 C -0.109 4.109 22 C -0.169 4.169 23 C 0.039 3.961 24 F -0.131 7.131 25 C -0.170 4.170 26 C -0.067 4.067 27 C -0.149 4.149 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.145 0.855 37 H 0.078 0.922 38 H 0.123 0.877 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.507 -4.430 4.003 8.831 hybrid contribution 0.372 1.256 -0.281 1.339 sum -6.135 -3.174 3.721 7.846 Atomic orbital electron populations 1.21759 0.94694 1.02097 1.02104 1.21483 0.96544 0.95795 1.01968 1.21213 0.90084 0.97999 1.02599 1.22409 0.95735 0.94347 1.01194 0.89265 1.23076 1.02392 1.01414 0.90446 1.22057 0.96620 0.98606 1.02438 0.85677 1.19951 0.87036 0.82037 0.83493 1.90527 1.68964 1.34436 1.57874 1.41479 1.22482 1.07426 1.42223 1.20108 1.18465 0.82818 1.26071 0.86292 1.26000 0.96439 1.01726 0.96278 1.70005 1.18711 1.26606 1.36045 0.84990 0.79146 0.77278 0.77436 1.20142 1.21725 1.18245 1.17121 0.86457 0.92552 0.89404 1.20727 0.97546 0.99406 0.93250 1.20775 0.90635 1.04927 1.00565 1.17464 0.82446 1.07313 0.88888 1.91388 1.52400 1.94677 1.74607 1.20764 0.99273 1.05192 0.91741 1.19757 0.91743 0.98653 0.96515 1.20510 1.02514 1.00625 0.91241 0.92852 0.92055 0.92021 0.92890 0.91522 0.90176 0.91956 0.90057 0.85502 0.92153 0.87728 0.84170 0.84083 0.92332 0.90660 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 71.98 0.71 -1.70 16 2 C -0.12 -2.42 5.89 30.59 0.18 -2.24 16 3 C -0.08 -1.90 5.50 30.60 0.17 -1.73 16 4 C -0.12 -3.63 5.25 -10.80 -0.06 -3.68 16 5 H 0.09 3.16 7.61 -2.38 -0.02 3.15 16 6 C -0.14 -4.05 9.88 30.60 0.30 -3.74 16 7 C -0.18 -6.48 4.80 -11.54 -0.06 -6.54 16 8 H 0.13 4.40 6.86 -2.38 -0.02 4.38 16 9 C 0.48 22.68 7.37 87.66 0.65 23.32 16 10 O -0.63 -33.23 16.25 -3.06 -0.05 -33.28 16 11 N -0.42 -20.40 1.79 -458.87 -0.82 -21.22 16 12 C -0.35 -16.37 8.62 84.02 0.72 -15.64 16 13 H 0.12 5.13 6.05 -2.91 -0.02 5.12 16 14 C 0.00 -0.06 5.44 84.91 0.46 0.40 16 15 N -0.88 -43.52 9.34 21.65 0.20 -43.32 16 16 Si 0.99 37.75 29.56 68.60 2.03 39.78 16 17 H -0.28 -10.41 7.11 99.48 0.71 -9.71 16 18 H -0.29 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 20 C 0.24 11.58 2.22 38.21 0.08 11.67 16 21 C -0.09 -4.24 8.88 22.40 0.20 -4.05 16 22 C -0.15 -6.37 10.02 22.29 0.22 -6.14 16 23 C 0.06 2.45 7.30 22.40 0.16 2.61 16 24 F -0.15 -5.92 17.26 44.97 0.78 -5.14 16 25 C -0.15 -6.34 9.67 22.29 0.22 -6.12 16 26 C -0.06 -2.98 5.17 -19.73 -0.10 -3.08 16 27 C -0.09 -3.81 9.77 71.23 0.70 -3.11 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.59 7.87 -2.38 -0.02 1.57 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.13 2.93 8.03 -2.39 -0.02 2.91 16 37 H 0.27 13.04 8.32 -92.71 -0.77 12.27 16 38 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 39 H 0.14 5.11 8.06 -2.91 -0.02 5.08 16 40 H 0.14 5.08 8.06 -2.91 -0.02 5.06 16 41 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.07 2.68 8.09 -2.39 -0.02 2.66 16 43 H 0.06 2.63 6.91 -2.39 -0.02 2.62 16 Total: -1.00 -58.68 360.26 7.70 -50.98 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 1.00 Total: 31.97 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: 4.56 Total: -19.77 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: -0.62 Total: -64.54 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -0.05 Total: -33.28 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.78 Total: -5.14 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -58.68 7.70 -50.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602391667.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.016 kcal (2) G-P(sol) polarization free energy of solvation -58.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds