Wall clock time and date at job start Tue Mar 31 2020 09:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46837 * 2 1 4 4 C 1.52999 * 109.47226 * 120.00071 * 2 1 3 5 5 C 1.50696 * 109.46948 * 294.72111 * 4 2 1 6 6 H 1.08001 * 120.00538 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99665 * 179.72492 * 5 4 2 8 8 N 1.31516 * 120.00295 * 0.27703 * 7 5 4 9 9 Si 1.86804 * 119.99797 * 180.27562 * 7 5 4 10 10 H 1.48493 * 109.47277 * 60.00370 * 9 7 5 11 11 H 1.48508 * 109.47055 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47344 * 299.99782 * 9 7 5 13 13 C 1.52994 * 109.46809 * 240.00176 * 2 1 3 14 14 N 1.46896 * 109.47234 * 157.37076 * 13 2 1 15 15 C 1.46476 * 111.00034 * 70.25723 * 14 13 2 16 16 C 1.53244 * 109.86234 * 162.23639 * 15 14 13 17 17 S 1.81900 * 108.50453 * 62.00320 * 16 15 14 18 18 C 1.81898 * 101.91643 * 308.69592 * 17 16 15 19 19 C 1.46464 * 111.00289 * 304.27837 * 14 13 2 20 20 H 1.09000 * 109.40749 * 77.64027 * 19 14 13 21 21 C 1.50704 * 109.40525 * 317.88502 * 19 14 13 22 22 C 1.38233 * 119.99728 * 311.28163 * 21 19 14 23 23 C 1.38235 * 119.99967 * 179.76605 * 22 21 19 24 24 C 1.38231 * 119.99782 * 0.48414 * 23 22 21 25 25 C 1.38231 * 120.00315 * 359.79204 * 24 23 22 26 26 C 1.38235 * 120.00193 * 131.55521 * 21 19 14 27 27 H 1.09008 * 109.47103 * 305.16856 * 1 2 3 28 28 H 1.08995 * 109.47699 * 65.16869 * 1 2 3 29 29 H 1.09005 * 109.46959 * 185.17454 * 1 2 3 30 30 H 1.08996 * 109.47040 * 174.72227 * 4 2 1 31 31 H 1.08997 * 109.47177 * 54.72044 * 4 2 1 32 32 H 0.96997 * 120.00087 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47308 * 277.37402 * 13 2 1 34 34 H 1.09002 * 109.47885 * 37.36939 * 13 2 1 35 35 H 1.09000 * 109.40625 * 282.35470 * 15 14 13 36 36 H 1.08997 * 109.40333 * 42.11545 * 15 14 13 37 37 H 1.09002 * 109.63576 * 181.70987 * 16 15 14 38 38 H 1.09008 * 109.63224 * 302.10161 * 16 15 14 39 39 H 1.08993 * 109.63099 * 171.01496 * 18 17 16 40 40 H 1.09006 * 109.62805 * 291.40322 * 18 17 16 41 41 H 1.08005 * 119.99923 * 359.97438 * 22 21 19 42 42 H 1.07998 * 119.99828 * 180.25038 * 23 22 21 43 43 H 1.08010 * 119.99783 * 179.76516 * 24 23 22 44 44 H 1.07999 * 120.00053 * 179.97438 * 25 24 23 45 45 H 1.08004 * 120.00173 * 359.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6473 0.0606 2.4762 6 1 1.0901 0.9802 2.3751 7 6 1.9950 -0.4008 3.7281 8 7 2.6740 -1.5203 3.8512 9 14 1.5014 0.5644 5.2494 10 1 0.0218 0.6760 5.3064 11 1 1.9924 -0.1381 6.4622 12 1 2.0984 1.9228 5.1892 13 6 2.0399 -0.7212 -1.2492 14 7 3.4084 -0.2775 -1.5465 15 6 4.3532 -0.7850 -0.5489 16 6 5.7826 -0.6992 -1.0944 17 16 6.1766 1.0486 -1.4086 18 6 4.7572 1.5786 -2.4152 19 6 3.4690 1.1790 -1.6878 20 1 3.4530 1.6397 -0.7001 21 6 2.2785 1.6552 -2.4798 22 6 1.9475 1.0353 -3.6701 23 6 0.8527 1.4689 -4.3942 24 6 0.0948 2.5289 -3.9328 25 6 0.4291 3.1525 -2.7453 26 6 1.5208 2.7155 -2.0187 27 1 -0.3634 0.5920 0.8401 28 1 -0.3634 0.4315 -0.9326 29 1 -0.3633 -1.0235 0.0927 30 1 3.1259 -0.8038 1.2032 31 1 1.6016 -1.7180 1.2978 32 1 2.9189 -1.8447 4.7319 33 1 2.0367 -1.7971 -1.0745 34 1 1.3911 -0.4885 -2.0936 35 1 4.2759 -0.1880 0.3598 36 1 4.1147 -1.8236 -0.3197 37 1 6.4795 -1.1056 -0.3614 38 1 5.8552 -1.2665 -2.0224 39 1 4.7841 2.6604 -2.5452 40 1 4.7972 1.0916 -3.3896 41 1 2.5424 0.2100 -4.0328 42 1 0.5918 0.9820 -5.3222 43 1 -0.7584 2.8702 -4.5005 44 1 -0.1628 3.9809 -2.3852 45 1 1.7818 3.2025 -1.0906 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602440929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:53 Heat of formation + Delta-G solvation = 27.087968 kcal Electronic energy + Delta-G solvation = -24154.924872 eV Core-core repulsion = 21070.158786 eV Total energy + Delta-G solvation = -3084.766086 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.13790 -37.86091 -34.59894 -32.66983 -32.26765 -30.85113 -29.65706 -29.23506 -27.07410 -24.72412 -23.84982 -23.42939 -22.40960 -21.61559 -20.09162 -18.83273 -16.94837 -16.28959 -16.21983 -15.69020 -15.55234 -14.98625 -14.59245 -14.22754 -13.96182 -13.67570 -13.49363 -13.23112 -13.15046 -12.83698 -12.55618 -12.39475 -12.14623 -11.76942 -11.61309 -11.57221 -11.32481 -11.23019 -10.93575 -10.87380 -10.75527 -10.62265 -10.42253 -10.33947 -9.64747 -9.56370 -9.19084 -9.11305 -8.75729 -8.57706 -8.33624 -7.82496 -7.47072 -6.00199 -4.00863 1.41233 1.51569 1.97239 2.69109 3.31694 3.36596 3.38823 3.83882 4.11663 4.45488 4.82834 4.97521 5.03713 5.09965 5.14903 5.23337 5.32957 5.36651 5.44413 5.53247 5.56252 5.61770 5.69879 5.81504 5.83516 5.95245 6.03244 6.05640 6.10772 6.19172 6.29539 6.39663 6.47107 6.52977 6.55670 6.60123 6.72534 6.93872 7.03388 7.08619 7.13589 7.34004 7.42265 7.66281 7.81424 7.99138 8.43769 9.04154 9.62371 11.10670 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011994 B = 0.005791 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.844204 B = 4833.873672 C = 6220.551306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 H 0.061 0.939 4 C 0.016 3.984 5 C -0.513 4.513 6 H 0.052 0.948 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.058 3.942 14 N -0.540 5.540 15 C 0.049 3.951 16 C -0.071 4.071 17 S -0.281 6.281 18 C -0.061 4.061 19 C 0.123 3.877 20 H 0.071 0.929 21 C -0.066 4.066 22 C -0.096 4.096 23 C -0.128 4.128 24 C -0.123 4.123 25 C -0.120 4.120 26 C -0.104 4.104 27 H 0.056 0.944 28 H 0.030 0.970 29 H 0.043 0.957 30 H 0.031 0.969 31 H 0.012 0.988 32 H 0.260 0.740 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.125 0.875 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.367 5.039 -16.065 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.140 4.140 3 H 0.079 0.921 4 C -0.021 4.021 5 C -0.552 4.552 6 H 0.070 0.930 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.069 4.069 14 N -0.263 5.263 15 C -0.080 4.080 16 C -0.220 4.220 17 S -0.053 6.053 18 C -0.210 4.210 19 C 0.013 3.987 20 H 0.089 0.911 21 C -0.068 4.068 22 C -0.114 4.114 23 C -0.146 4.146 24 C -0.142 4.142 25 C -0.139 4.139 26 C -0.123 4.123 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.120 0.880 40 H 0.106 0.894 41 H 0.143 0.857 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.544 5.298 -16.024 16.948 hybrid contribution -1.588 0.073 1.424 2.135 sum -0.044 5.371 -14.599 15.556 Atomic orbital electron populations 1.21609 0.96218 1.00888 0.99587 1.21862 0.95754 0.99970 0.96390 0.92116 1.19516 0.97025 0.95174 0.90387 1.21181 1.34963 1.07902 0.91123 0.93025 1.24974 0.95333 0.95017 0.98930 1.69932 1.39146 1.20974 1.23454 0.86755 0.78860 0.80230 0.82747 1.20389 1.21330 1.20325 1.22463 0.87335 0.99632 0.97491 1.61546 1.07504 1.09169 1.48098 1.22575 0.89141 1.02272 0.94023 1.23589 1.00350 0.93441 1.04586 1.86816 1.33788 1.14633 1.70071 1.23514 0.93349 1.03789 1.00353 1.20697 0.90943 0.89436 0.97581 0.91090 1.19656 0.96115 0.95802 0.95230 1.20998 0.96988 0.99232 0.94183 1.21096 0.96019 0.97462 0.99990 1.21088 0.99702 0.96725 0.96650 1.21057 0.97303 1.00214 0.95282 1.21076 0.95113 0.96578 0.99525 0.92532 0.95089 0.93779 0.95134 0.96969 0.93058 0.91248 0.91025 0.90478 0.89285 0.87725 0.89624 0.88036 0.89358 0.85667 0.86476 0.86606 0.86350 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.86 37.16 0.33 -2.02 16 2 C -0.12 -2.33 1.84 -90.62 -0.17 -2.49 16 3 H 0.06 1.21 4.81 -51.93 -0.25 0.96 16 4 C 0.02 0.38 4.09 -27.89 -0.11 0.26 16 5 C -0.51 -14.00 8.47 -34.44 -0.29 -14.29 16 6 H 0.05 1.39 7.08 -52.49 -0.37 1.02 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.90 -26.26 13.29 55.43 0.74 -25.53 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.06 0.96 4.48 -3.83 -0.02 0.94 16 14 N -0.54 -8.21 4.20 -228.44 -0.96 -9.17 16 15 C 0.05 0.80 3.74 -3.93 -0.01 0.78 16 16 C -0.07 -1.00 6.69 37.28 0.25 -0.75 16 17 S -0.28 -4.11 22.40 -107.50 -2.41 -6.52 16 18 C -0.06 -0.80 5.86 37.28 0.22 -0.59 16 19 C 0.12 1.79 1.35 -68.97 -0.09 1.69 16 20 H 0.07 1.22 6.37 -51.93 -0.33 0.89 16 21 C -0.07 -0.88 3.08 -104.62 -0.32 -1.21 16 22 C -0.10 -1.18 7.36 -39.58 -0.29 -1.47 16 23 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 24 C -0.12 -1.35 10.05 -39.59 -0.40 -1.75 16 25 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 26 C -0.10 -1.38 8.94 -39.58 -0.35 -1.74 16 27 H 0.06 1.14 7.13 -51.92 -0.37 0.77 16 28 H 0.03 0.51 8.01 -51.93 -0.42 0.10 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.03 0.76 4.18 -51.93 -0.22 0.55 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.07 1.20 7.63 -51.93 -0.40 0.80 16 34 H 0.07 1.12 5.28 -51.93 -0.27 0.85 16 35 H 0.08 1.53 5.83 -51.93 -0.30 1.23 16 36 H 0.09 1.51 7.57 -51.93 -0.39 1.12 16 37 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 39 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.09 1.10 8.08 -51.93 -0.42 0.68 16 41 H 0.13 1.50 7.98 -52.48 -0.42 1.09 16 42 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 44 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.12 1.62 7.98 -52.48 -0.42 1.20 16 LS Contribution 352.22 15.07 5.31 5.31 Total: -1.00 -28.64 352.22 -11.60 -40.24 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.10 Total: 3.82 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: -2.16 Total: -24.71 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: -0.22 Total: -34.70 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -4.11 SS G_CDS: -2.41 Total: -6.52 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.64 -11.60 -40.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602440929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.328 kcal (2) G-P(sol) polarization free energy of solvation -28.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds