Wall clock time and date at job start Tue Mar 31 2020 09:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46837 * 2 1 4 4 C 1.52999 * 109.47226 * 120.00071 * 2 1 3 5 5 C 1.50696 * 109.46948 * 294.72111 * 4 2 1 6 6 H 1.08001 * 120.00538 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99665 * 179.72492 * 5 4 2 8 8 N 1.31516 * 120.00295 * 0.27703 * 7 5 4 9 9 Si 1.86804 * 119.99797 * 180.27562 * 7 5 4 10 10 H 1.48493 * 109.47277 * 60.00370 * 9 7 5 11 11 H 1.48508 * 109.47055 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47344 * 299.99782 * 9 7 5 13 13 C 1.52994 * 109.46809 * 240.00176 * 2 1 3 14 14 N 1.46896 * 109.47234 * 157.37076 * 13 2 1 15 15 C 1.46476 * 111.00034 * 70.25723 * 14 13 2 16 16 C 1.53244 * 109.86234 * 162.23639 * 15 14 13 17 17 S 1.81900 * 108.50453 * 62.00320 * 16 15 14 18 18 C 1.81898 * 101.91643 * 308.69592 * 17 16 15 19 19 C 1.46464 * 111.00289 * 304.27837 * 14 13 2 20 20 H 1.09000 * 109.40749 * 77.64027 * 19 14 13 21 21 C 1.50704 * 109.40525 * 317.88502 * 19 14 13 22 22 C 1.38233 * 119.99728 * 311.28163 * 21 19 14 23 23 C 1.38235 * 119.99967 * 179.76605 * 22 21 19 24 24 C 1.38231 * 119.99782 * 0.48414 * 23 22 21 25 25 C 1.38231 * 120.00315 * 359.79204 * 24 23 22 26 26 C 1.38235 * 120.00193 * 131.55521 * 21 19 14 27 27 H 1.09008 * 109.47103 * 305.16856 * 1 2 3 28 28 H 1.08995 * 109.47699 * 65.16869 * 1 2 3 29 29 H 1.09005 * 109.46959 * 185.17454 * 1 2 3 30 30 H 1.08996 * 109.47040 * 174.72227 * 4 2 1 31 31 H 1.08997 * 109.47177 * 54.72044 * 4 2 1 32 32 H 0.96997 * 120.00087 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47308 * 277.37402 * 13 2 1 34 34 H 1.09002 * 109.47885 * 37.36939 * 13 2 1 35 35 H 1.09000 * 109.40625 * 282.35470 * 15 14 13 36 36 H 1.08997 * 109.40333 * 42.11545 * 15 14 13 37 37 H 1.09002 * 109.63576 * 181.70987 * 16 15 14 38 38 H 1.09008 * 109.63224 * 302.10161 * 16 15 14 39 39 H 1.08993 * 109.63099 * 171.01496 * 18 17 16 40 40 H 1.09006 * 109.62805 * 291.40322 * 18 17 16 41 41 H 1.08005 * 119.99923 * 359.97438 * 22 21 19 42 42 H 1.07998 * 119.99828 * 180.25038 * 23 22 21 43 43 H 1.08010 * 119.99783 * 179.76516 * 24 23 22 44 44 H 1.07999 * 120.00053 * 179.97438 * 25 24 23 45 45 H 1.08004 * 120.00173 * 359.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6473 0.0606 2.4762 6 1 1.0901 0.9802 2.3751 7 6 1.9950 -0.4008 3.7281 8 7 2.6740 -1.5203 3.8512 9 14 1.5014 0.5644 5.2494 10 1 0.0218 0.6760 5.3064 11 1 1.9924 -0.1381 6.4622 12 1 2.0984 1.9228 5.1892 13 6 2.0399 -0.7212 -1.2492 14 7 3.4084 -0.2775 -1.5465 15 6 4.3532 -0.7850 -0.5489 16 6 5.7826 -0.6992 -1.0944 17 16 6.1766 1.0486 -1.4086 18 6 4.7572 1.5786 -2.4152 19 6 3.4690 1.1790 -1.6878 20 1 3.4530 1.6397 -0.7001 21 6 2.2785 1.6552 -2.4798 22 6 1.9475 1.0353 -3.6701 23 6 0.8527 1.4689 -4.3942 24 6 0.0948 2.5289 -3.9328 25 6 0.4291 3.1525 -2.7453 26 6 1.5208 2.7155 -2.0187 27 1 -0.3634 0.5920 0.8401 28 1 -0.3634 0.4315 -0.9326 29 1 -0.3633 -1.0235 0.0927 30 1 3.1259 -0.8038 1.2032 31 1 1.6016 -1.7180 1.2978 32 1 2.9189 -1.8447 4.7319 33 1 2.0367 -1.7971 -1.0745 34 1 1.3911 -0.4885 -2.0936 35 1 4.2759 -0.1880 0.3598 36 1 4.1147 -1.8236 -0.3197 37 1 6.4795 -1.1056 -0.3614 38 1 5.8552 -1.2665 -2.0224 39 1 4.7841 2.6604 -2.5452 40 1 4.7972 1.0916 -3.3896 41 1 2.5424 0.2100 -4.0328 42 1 0.5918 0.9820 -5.3222 43 1 -0.7584 2.8702 -4.5005 44 1 -0.1628 3.9809 -2.3852 45 1 1.7818 3.2025 -1.0906 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602440929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:53 Heat of formation + Delta-G solvation = 13.146160 kcal Electronic energy + Delta-G solvation = -24155.529434 eV Core-core repulsion = 21070.158786 eV Total energy + Delta-G solvation = -3085.370648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.29502 -39.00131 -36.25472 -34.26207 -33.80291 -31.78256 -31.04146 -30.24891 -28.97016 -26.20410 -25.17163 -24.95977 -23.47475 -22.77187 -21.49204 -20.25718 -18.51444 -17.93258 -17.28208 -16.94032 -16.87753 -16.54397 -15.93842 -15.42081 -15.21076 -14.88761 -14.78906 -14.68780 -14.18021 -14.13409 -13.93863 -13.84518 -13.50261 -13.28161 -13.06933 -12.93419 -12.81594 -12.76767 -12.47074 -12.38033 -12.27355 -12.14375 -11.84797 -11.57906 -11.33360 -11.18822 -10.93455 -10.74807 -10.47674 -9.69702 -9.55000 -9.22938 -8.67264 -8.17089 -6.24493 0.47411 0.60016 0.83355 1.35921 1.37138 1.44650 1.54818 2.39458 2.75866 3.00112 3.15837 3.73951 3.86003 3.92803 4.04944 4.15306 4.20151 4.23607 4.26822 4.34987 4.37942 4.40801 4.49602 4.50264 4.71324 4.75485 4.77855 4.82381 4.86529 4.93747 4.99238 5.09026 5.14875 5.25623 5.26456 5.39640 5.42144 5.56102 5.63888 5.71353 5.71920 5.78955 5.90957 6.06031 6.11420 6.20343 6.32192 6.90192 7.42253 8.93160 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011994 B = 0.005791 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.844204 B = 4833.873672 C = 6220.551306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.107 4.107 3 H 0.055 0.945 4 C 0.022 3.978 5 C -0.527 4.527 6 H 0.049 0.951 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.948 3.052 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.068 3.932 14 N -0.525 5.525 15 C 0.056 3.944 16 C -0.060 4.060 17 S -0.307 6.307 18 C -0.048 4.048 19 C 0.129 3.871 20 H 0.038 0.962 21 C -0.078 4.078 22 C -0.101 4.101 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.125 4.125 26 C -0.122 4.122 27 H 0.037 0.963 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.020 0.980 31 H -0.018 1.018 32 H 0.260 0.740 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.130 0.870 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.133 0.867 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.653 5.908 -18.195 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.127 4.127 3 H 0.073 0.927 4 C -0.015 4.015 5 C -0.565 4.565 6 H 0.068 0.932 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.774 3.226 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.197 1.197 13 C -0.059 4.059 14 N -0.248 5.248 15 C -0.073 4.073 16 C -0.208 4.208 17 S -0.080 6.080 18 C -0.197 4.197 19 C 0.019 3.981 20 H 0.056 0.944 21 C -0.080 4.080 22 C -0.119 4.119 23 C -0.142 4.142 24 C -0.139 4.139 25 C -0.143 4.143 26 C -0.141 4.141 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.038 0.962 31 H 0.000 1.000 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.122 0.878 41 H 0.148 0.852 42 H 0.161 0.839 43 H 0.160 0.840 44 H 0.151 0.849 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.522 6.180 -18.163 19.192 hybrid contribution -1.300 -0.161 2.055 2.437 sum -0.779 6.019 -16.108 17.213 Atomic orbital electron populations 1.21524 0.95436 1.00468 1.00135 1.21676 0.96271 0.99235 0.95535 0.92699 1.19418 0.96312 0.93732 0.92036 1.21571 1.34489 1.07962 0.92473 0.93230 1.25782 0.95437 0.95990 1.02061 1.70056 1.40341 1.22477 1.24078 0.85758 0.78820 0.78951 0.79089 1.19544 1.20915 1.19690 1.22340 0.88328 0.98735 0.96534 1.61627 1.06495 1.09910 1.46763 1.22380 0.91164 1.00840 0.92964 1.23516 0.98489 0.93336 1.05492 1.86915 1.34867 1.15375 1.70837 1.23517 0.91413 1.04580 1.00177 1.20599 0.92725 0.88267 0.96501 0.94430 1.19534 0.95943 0.96575 0.95909 1.21082 0.97686 0.99379 0.93782 1.21416 0.95083 0.97181 1.00548 1.21435 1.00169 0.96135 0.96167 1.21288 0.96787 1.00663 0.95568 1.21104 0.96210 0.97136 0.99663 0.94424 0.92432 0.94169 0.96164 0.99999 0.93074 0.92010 0.89086 0.94556 0.90301 0.87238 0.87655 0.86924 0.87828 0.85213 0.83911 0.83955 0.84888 0.87425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.39 8.86 71.98 0.64 -3.76 16 2 C -0.11 -4.24 1.84 -10.79 -0.02 -4.26 16 3 H 0.05 2.26 4.81 -2.39 -0.01 2.25 16 4 C 0.02 1.10 4.09 29.85 0.12 1.22 16 5 C -0.53 -29.59 8.47 25.60 0.22 -29.38 16 6 H 0.05 2.74 7.08 -2.91 -0.02 2.72 16 7 C 0.00 0.29 5.46 84.65 0.46 0.75 16 8 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 9 Si 0.95 44.89 29.54 68.60 2.03 46.91 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 13 C 0.07 2.23 4.48 86.30 0.39 2.62 16 14 N -0.52 -15.90 4.20 -876.65 -3.68 -19.58 16 15 C 0.06 1.89 3.74 86.47 0.32 2.21 16 16 C -0.06 -1.67 6.69 72.06 0.48 -1.19 16 17 S -0.31 -8.92 22.40 -56.49 -1.27 -10.19 16 18 C -0.05 -1.22 5.86 72.06 0.42 -0.80 16 19 C 0.13 3.72 1.35 44.33 0.06 3.78 16 20 H 0.04 1.35 6.37 -2.39 -0.02 1.34 16 21 C -0.08 -1.98 3.08 -19.87 -0.06 -2.04 16 22 C -0.10 -2.20 7.36 22.27 0.16 -2.04 16 23 C -0.12 -2.29 10.05 22.27 0.22 -2.07 16 24 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 25 C -0.13 -2.66 10.05 22.27 0.22 -2.43 16 26 C -0.12 -3.13 8.94 22.27 0.20 -2.93 16 27 H 0.04 1.52 7.13 -2.38 -0.02 1.50 16 28 H 0.06 1.82 8.01 -2.39 -0.02 1.80 16 29 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.02 1.07 4.18 -2.39 -0.01 1.06 16 31 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 32 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 33 H 0.06 2.14 7.63 -2.39 -0.02 2.12 16 34 H 0.09 2.68 5.28 -2.39 -0.01 2.67 16 35 H 0.04 1.54 5.83 -2.39 -0.01 1.52 16 36 H 0.08 2.80 7.57 -2.39 -0.02 2.78 16 37 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.10 2.55 8.14 -2.38 -0.02 2.53 16 39 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.10 2.33 8.08 -2.38 -0.02 2.31 16 41 H 0.13 2.71 7.98 -2.91 -0.02 2.69 16 42 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 43 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 44 H 0.13 2.36 8.06 -2.91 -0.02 2.33 16 45 H 0.11 2.95 7.98 -2.91 -0.02 2.93 16 Total: -1.00 -62.87 352.22 2.39 -60.48 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.96 Total: 20.42 kcal Atomic # 6 Polarization: -46.37 SS G_CDS: 4.07 Total: -42.30 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -3.39 Total: -75.33 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.27 Total: -10.19 kcal Total: -62.87 2.39 -60.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602440929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.628 kcal (2) G-P(sol) polarization free energy of solvation -62.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds