Wall clock time and date at job start Tue Mar 31 2020 09:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47426 * 2 1 4 4 C 1.53005 * 109.47267 * 240.00036 * 2 1 3 5 5 C 1.50700 * 109.46868 * 65.00093 * 4 2 1 6 6 H 1.08001 * 120.00235 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99945 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00009 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00045 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47042 * 90.00118 * 9 7 5 11 11 H 1.48502 * 109.47373 * 210.00127 * 9 7 5 12 12 H 1.48503 * 109.47245 * 330.00210 * 9 7 5 13 13 C 1.53001 * 109.47249 * 120.00246 * 2 1 3 14 14 N 1.46897 * 109.47053 * 295.00038 * 13 2 1 15 15 C 1.46467 * 111.00242 * 293.95493 * 14 13 2 16 16 C 1.53247 * 109.86486 * 162.23356 * 15 14 13 17 17 S 1.81896 * 108.67019 * 61.90213 * 16 15 14 18 18 C 1.81990 * 101.87890 * 308.95970 * 17 16 15 19 19 C 1.46473 * 111.00135 * 167.97110 * 14 13 2 20 20 H 1.09006 * 109.40338 * 77.72891 * 19 14 13 21 21 C 1.50697 * 109.40514 * 317.88518 * 19 14 13 22 22 C 1.38233 * 119.99927 * 319.72495 * 21 19 14 23 23 C 1.38236 * 119.99816 * 179.76702 * 22 21 19 24 24 C 1.38238 * 120.00154 * 0.48196 * 23 22 21 25 25 C 1.38246 * 119.99736 * 359.79706 * 24 23 22 26 26 C 1.38235 * 119.99751 * 139.99779 * 21 19 14 27 27 H 1.08995 * 109.47210 * 300.00032 * 1 2 3 28 28 H 1.09002 * 109.47130 * 60.00147 * 1 2 3 29 29 H 1.09000 * 109.46777 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47173 * 184.99633 * 4 2 1 31 31 H 1.08995 * 109.46998 * 305.00074 * 4 2 1 32 32 H 0.96999 * 120.00070 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47075 * 174.99961 * 13 2 1 34 34 H 1.08997 * 109.47100 * 54.99653 * 13 2 1 35 35 H 1.09001 * 109.40617 * 42.11274 * 15 14 13 36 36 H 1.09003 * 109.40269 * 282.35491 * 15 14 13 37 37 H 1.09002 * 109.63363 * 181.70852 * 16 15 14 38 38 H 1.08995 * 109.62997 * 302.10064 * 16 15 14 39 39 H 1.09005 * 109.46130 * 291.34240 * 18 17 16 40 40 H 1.09002 * 109.82199 * 170.93803 * 18 17 16 41 41 H 1.07999 * 120.00217 * 359.97438 * 22 21 19 42 42 H 1.08005 * 120.00464 * 180.25384 * 23 22 21 43 43 H 1.07991 * 120.00372 * 179.76835 * 24 23 22 44 44 H 1.07997 * 120.00178 * 179.97438 * 25 24 23 45 45 H 1.07995 * 120.00249 * 0.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0571 -2.4766 6 1 1.0807 0.9746 -2.3757 7 6 1.9933 -0.4016 -3.7283 8 7 2.6765 -1.5186 -3.8512 9 14 1.4985 0.5628 -5.2496 10 1 2.5632 1.5432 -5.5821 11 1 1.3123 -0.3712 -6.3890 12 1 0.2268 1.2832 -4.9871 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.3320 1.3335 2.4894 16 6 1.6079 2.2693 3.4632 17 16 1.6728 1.5401 5.1284 18 6 1.0686 -0.1490 4.8215 19 6 1.8670 -0.7519 3.6606 20 1 2.9278 -0.7479 3.9115 21 6 1.4136 -2.1694 3.4239 22 6 0.2567 -2.4146 2.7081 23 6 -0.1565 -3.7151 2.4869 24 6 0.5817 -4.7700 2.9899 25 6 1.7356 -4.5246 3.7106 26 6 2.1517 -3.2243 3.9273 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1263 -0.7994 -1.2056 31 1 1.6054 -1.7198 -1.2952 32 1 2.9237 -1.8415 -4.7318 33 1 3.1263 -0.7995 1.2055 34 1 1.6054 -1.7198 1.2951 35 1 2.3316 1.7766 1.4935 36 1 3.3607 1.1913 2.8208 37 1 2.0994 3.2422 3.4701 38 1 0.5691 2.3860 3.1548 39 1 0.0110 -0.1144 4.5596 40 1 1.2048 -0.7583 5.7149 41 1 -0.3224 -1.5904 2.3189 42 1 -1.0582 -3.9069 1.9241 43 1 0.2569 -5.7859 2.8203 44 1 2.3122 -5.3487 4.1040 45 1 3.0529 -3.0325 4.4906 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602440930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:56 Heat of formation + Delta-G solvation = 21.663811 kcal Electronic energy + Delta-G solvation = -23554.246739 eV Core-core repulsion = 20469.245444 eV Total energy + Delta-G solvation = -3085.001295 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.07729 -37.81057 -34.99539 -32.85535 -32.21003 -30.87689 -29.80139 -29.38165 -26.82695 -25.15438 -23.98055 -23.14555 -22.39402 -21.87642 -20.05933 -18.87026 -17.26326 -16.43946 -16.31699 -15.78542 -15.22626 -14.87068 -14.58064 -14.36428 -14.20415 -14.12815 -13.87166 -13.32382 -13.18194 -12.81266 -12.67261 -12.52126 -12.41124 -11.92610 -11.70514 -11.54071 -11.43101 -11.30024 -10.97627 -10.85940 -10.79225 -10.70254 -10.31286 -10.26862 -9.88684 -9.56417 -9.16706 -8.98991 -8.82904 -8.56786 -8.33924 -8.19520 -7.73334 -5.98689 -4.00039 1.32940 1.46841 1.75595 2.46068 3.31552 3.38237 3.41098 3.75024 3.89060 4.46758 4.67133 4.82655 4.88881 4.95370 5.05132 5.12683 5.18707 5.21133 5.26764 5.36444 5.37289 5.55640 5.63457 5.65000 5.76589 5.82720 5.86688 5.98243 6.00345 6.11588 6.14267 6.37487 6.45979 6.51364 6.57772 6.60371 6.65455 6.93957 7.02061 7.08265 7.16913 7.29624 7.33346 7.68094 7.83416 8.01269 8.44727 9.06320 9.63488 11.12744 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.004555 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.059623 B = 6145.393067 C = 7742.062285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 H 0.055 0.945 4 C 0.029 3.971 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.053 3.947 14 N -0.540 5.540 15 C 0.052 3.948 16 C -0.070 4.070 17 S -0.285 6.285 18 C -0.059 4.059 19 C 0.128 3.872 20 H 0.058 0.942 21 C -0.081 4.081 22 C -0.087 4.087 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.124 4.124 26 C -0.114 4.114 27 H 0.040 0.960 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.011 0.989 31 H 0.016 0.984 32 H 0.259 0.741 33 H 0.028 0.972 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.044 0.956 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.134 0.866 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.107 -0.950 18.158 18.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.009 4.009 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.073 4.073 14 N -0.265 5.265 15 C -0.077 4.077 16 C -0.218 4.218 17 S -0.057 6.057 18 C -0.208 4.208 19 C 0.018 3.982 20 H 0.076 0.924 21 C -0.083 4.083 22 C -0.106 4.106 23 C -0.141 4.141 24 C -0.136 4.136 25 C -0.142 4.142 26 C -0.133 4.133 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.105 0.895 35 H 0.117 0.883 36 H 0.062 0.938 37 H 0.122 0.878 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.152 0.848 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.194 -0.448 18.997 19.269 hybrid contribution 0.337 -0.282 -2.046 2.093 sum -2.857 -0.731 16.951 17.206 Atomic orbital electron populations 1.21596 0.95842 1.00447 1.00090 1.21242 0.95880 0.98870 0.93790 0.92696 1.19101 0.95855 0.95557 0.90372 1.21209 1.34644 1.08233 0.90954 0.92630 1.25009 0.95334 0.95053 0.99058 1.69965 1.39064 1.21177 1.23365 0.86653 0.78924 0.79832 0.82943 1.20774 1.21305 1.19894 1.22559 0.97882 0.98332 0.88509 1.61248 1.59566 1.03640 1.02014 1.22284 0.95149 0.89726 1.00559 1.23525 1.05098 1.00613 0.92574 1.86807 1.87757 1.14232 1.16906 1.23531 1.02958 0.93690 1.00614 1.20646 0.97679 0.89512 0.90394 0.92401 1.19652 0.95971 0.93665 0.99055 1.21170 0.95685 0.97206 0.96504 1.21206 1.00231 0.92737 0.99905 1.21160 0.95436 0.99034 0.98010 1.21045 0.97029 0.96441 0.99729 1.20974 0.99537 0.92439 1.00344 0.94110 0.92715 0.94158 0.97055 0.96610 0.93107 0.95386 0.89524 0.88303 0.93756 0.87763 0.88933 0.88978 0.87888 0.84791 0.85989 0.86318 0.86288 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 8.58 37.16 0.32 -1.93 16 2 C -0.08 -1.55 2.28 -90.62 -0.21 -1.75 16 3 H 0.05 1.08 6.09 -51.93 -0.32 0.77 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.09 8.41 -34.44 -0.29 -14.38 16 6 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.05 0.90 3.67 -3.83 -0.01 0.88 16 14 N -0.54 -7.45 3.26 -228.43 -0.75 -8.20 16 15 C 0.05 0.68 5.29 -3.93 -0.02 0.66 16 16 C -0.07 -0.79 6.68 37.29 0.25 -0.54 16 17 S -0.28 -3.40 22.41 -107.50 -2.41 -5.81 16 18 C -0.06 -0.67 5.94 37.29 0.22 -0.44 16 19 C 0.13 1.59 2.10 -68.97 -0.14 1.44 16 20 H 0.06 0.75 7.77 -51.93 -0.40 0.35 16 21 C -0.08 -1.03 3.64 -104.63 -0.38 -1.41 16 22 C -0.09 -1.15 7.14 -39.58 -0.28 -1.43 16 23 C -0.12 -1.52 10.05 -39.58 -0.40 -1.91 16 24 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 25 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 26 C -0.11 -1.34 9.67 -39.58 -0.38 -1.72 16 27 H 0.04 0.66 7.75 -51.93 -0.40 0.26 16 28 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 29 H 0.04 0.73 8.09 -51.93 -0.42 0.31 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 34 H 0.09 1.51 4.61 -51.93 -0.24 1.27 16 35 H 0.10 1.38 5.82 -51.93 -0.30 1.08 16 36 H 0.04 0.59 7.91 -51.93 -0.41 0.17 16 37 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.13 1.84 7.25 -52.49 -0.38 1.46 16 42 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 43 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 45 H 0.12 1.19 8.04 -52.49 -0.42 0.77 16 LS Contribution 360.07 15.07 5.43 5.43 Total: -1.00 -29.29 360.07 -11.75 -41.04 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.39 Total: 1.07 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -2.35 Total: -23.98 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: -0.01 Total: -34.24 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -2.41 Total: -5.81 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.29 -11.75 -41.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602440930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.704 kcal (2) G-P(sol) polarization free energy of solvation -29.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds