Wall clock time and date at job start Tue Mar 31 2020 09:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47466 * 2 1 4 4 C 1.52995 * 109.47297 * 120.00021 * 2 1 3 5 5 C 1.50699 * 109.47387 * 294.99862 * 4 2 1 6 6 H 1.08003 * 119.99580 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99890 * 180.02562 * 5 4 2 8 8 N 1.31506 * 120.00452 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99690 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47170 * 89.99753 * 9 7 5 11 11 H 1.48494 * 109.47053 * 210.00101 * 9 7 5 12 12 H 1.48499 * 109.47110 * 329.99959 * 9 7 5 13 13 C 1.53001 * 109.46967 * 240.00037 * 2 1 3 14 14 N 1.46901 * 109.46960 * 63.41727 * 13 2 1 15 15 C 1.46471 * 111.00002 * 201.88532 * 14 13 2 16 16 C 1.53253 * 109.86195 * 162.23525 * 15 14 13 17 17 S 1.81896 * 108.50552 * 62.00172 * 16 15 14 18 18 C 1.81896 * 101.91531 * 308.69603 * 17 16 15 19 19 H 1.08997 * 109.63578 * 291.60038 * 18 17 16 20 20 C 1.50704 * 109.63356 * 171.00690 * 18 17 16 21 21 C 1.38228 * 120.00258 * 300.71916 * 20 18 17 22 22 C 1.38232 * 120.00590 * 179.80772 * 21 20 18 23 23 C 1.38244 * 119.99548 * 0.41618 * 22 21 20 24 24 C 1.38231 * 119.99699 * 359.81068 * 23 22 21 25 25 C 1.38233 * 119.99821 * 120.98578 * 20 18 17 26 26 C 1.46473 * 111.00033 * 75.90545 * 14 13 2 27 27 H 1.09001 * 109.46804 * 305.49765 * 1 2 3 28 28 H 1.09002 * 109.47257 * 65.49471 * 1 2 3 29 29 H 1.08996 * 109.47105 * 185.50123 * 1 2 3 30 30 H 1.09000 * 109.47283 * 55.00364 * 4 2 1 31 31 H 1.08999 * 109.47131 * 174.99677 * 4 2 1 32 32 H 0.97002 * 120.00368 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47214 * 303.41857 * 13 2 1 34 34 H 1.08998 * 109.47400 * 183.41335 * 13 2 1 35 35 H 1.09004 * 109.40735 * 282.35120 * 15 14 13 36 36 H 1.09002 * 109.40562 * 42.11205 * 15 14 13 37 37 H 1.08998 * 109.62936 * 181.71015 * 16 15 14 38 38 H 1.09003 * 109.62956 * 302.29760 * 16 15 14 39 39 H 1.08009 * 120.00042 * 359.97438 * 21 20 18 40 40 H 1.07999 * 120.00990 * 180.20809 * 22 21 20 41 41 H 1.07992 * 120.00199 * 179.79276 * 23 22 21 42 42 H 1.08004 * 120.00143 * 179.97438 * 24 23 22 43 43 H 1.08007 * 120.00190 * 359.97438 * 25 20 18 44 44 H 1.09001 * 109.40450 * 77.64857 * 26 14 13 45 45 H 1.08991 * 109.33925 * 317.84287 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0570 2.4766 6 1 1.0808 0.9746 2.3756 7 6 1.9934 -0.4018 3.7282 8 7 2.6774 -1.5182 3.8510 9 14 1.4999 0.5634 5.2496 10 1 0.1728 0.0953 5.7238 11 1 2.5097 0.3535 6.3180 12 1 1.4250 2.0085 4.9163 13 6 2.0400 -0.7213 -1.2493 14 7 1.6188 0.0173 -2.4473 15 6 1.6158 -0.8522 -3.6259 16 6 0.7756 -0.2172 -4.7393 17 16 1.5390 1.3663 -5.2068 18 6 1.7257 2.1842 -3.5929 19 1 0.7432 2.4374 -3.1947 20 6 2.5500 3.4357 -3.7518 21 6 3.8376 3.3569 -4.2482 22 6 4.5923 4.5054 -4.3978 23 6 4.0623 5.7318 -4.0428 24 6 2.7763 5.8100 -3.5419 25 6 2.0203 4.6620 -3.3960 26 6 2.4351 1.2186 -2.6373 27 1 -0.3633 0.5967 0.8367 28 1 -0.3634 0.4263 -0.9351 29 1 -0.3633 -1.0229 0.0985 30 1 1.6055 -1.7198 1.2951 31 1 3.1263 -0.7995 1.2055 32 1 2.9248 -1.8412 4.7316 33 1 1.6275 -1.7297 -1.2804 34 1 3.1282 -0.7746 -1.2193 35 1 2.6384 -0.9895 -3.9774 36 1 1.1923 -1.8209 -3.3603 37 1 0.7509 -0.8812 -5.6033 38 1 -0.2382 -0.0427 -4.3788 39 1 4.2532 2.3983 -4.5218 40 1 5.5972 4.4442 -4.7888 41 1 4.6530 6.6287 -4.1564 42 1 2.3623 6.7681 -3.2642 43 1 1.0155 4.7231 -3.0044 44 1 3.4008 0.9374 -3.0575 45 1 2.5872 1.7075 -1.6752 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602472235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:22:03 Heat of formation + Delta-G solvation = 12.087674 kcal Electronic energy + Delta-G solvation = -22734.965676 eV Core-core repulsion = 19649.549128 eV Total energy + Delta-G solvation = -3085.416548 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.55728 -38.27778 -34.94255 -33.39722 -32.24837 -31.03074 -30.34421 -28.63112 -26.79221 -25.18590 -24.08785 -22.87770 -22.64876 -21.22312 -20.83045 -18.90589 -17.27475 -16.69147 -16.36854 -15.63059 -15.44004 -14.97537 -14.67376 -14.46081 -14.32194 -13.99322 -13.86287 -13.48702 -13.27591 -12.80783 -12.65084 -12.61237 -12.44355 -12.03124 -11.80368 -11.55461 -11.36062 -11.25249 -11.13961 -10.84910 -10.79416 -10.68933 -10.35414 -10.30779 -9.88274 -9.60719 -9.15220 -9.02878 -9.00001 -8.80209 -8.33810 -8.20034 -7.71307 -5.98636 -3.99721 1.00658 1.30251 1.88849 2.46082 3.32334 3.38755 3.41945 3.67571 3.87043 4.47133 4.58192 4.68149 4.85314 4.86685 4.92759 5.01821 5.12543 5.17527 5.19247 5.37419 5.38941 5.43466 5.53355 5.61676 5.72302 5.76480 5.82110 5.86488 5.93973 5.98527 6.11491 6.32438 6.33546 6.39569 6.47932 6.48363 6.66081 6.86609 6.94925 7.07814 7.15760 7.27146 7.32274 7.67561 7.83056 8.01265 8.45473 9.06560 9.63899 11.12918 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013523 B = 0.003756 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.979684 B = 7453.109135 C = 8855.861085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.079 4.079 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.066 3.934 14 N -0.548 5.548 15 C 0.055 3.945 16 C -0.076 4.076 17 S -0.268 6.268 18 C 0.002 3.998 19 H 0.103 0.897 20 C -0.067 4.067 21 C -0.098 4.098 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.101 4.101 26 C 0.065 3.935 27 H 0.051 0.949 28 H 0.042 0.958 29 H 0.039 0.961 30 H 0.015 0.985 31 H 0.012 0.988 32 H 0.259 0.741 33 H 0.070 0.930 34 H 0.033 0.967 35 H 0.044 0.956 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.045 0.955 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.098 8.494 -19.340 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.061 4.061 14 N -0.273 5.273 15 C -0.075 4.075 16 C -0.225 4.225 17 S -0.039 6.039 18 C -0.127 4.127 19 H 0.121 0.879 20 C -0.069 4.069 21 C -0.117 4.117 22 C -0.140 4.140 23 C -0.137 4.137 24 C -0.139 4.139 25 C -0.120 4.120 26 C -0.065 4.065 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.110 0.890 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.064 0.936 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.046 8.834 -20.194 22.042 hybrid contribution 0.227 -0.282 1.989 2.022 sum 0.181 8.552 -18.205 20.115 Atomic orbital electron populations 1.21559 0.95775 1.00629 0.99877 1.21206 0.95953 0.99000 0.93596 0.92730 1.19128 0.95895 0.95526 0.90468 1.21218 1.34572 1.08272 0.90948 0.92614 1.25006 0.95294 0.95093 0.99072 1.69958 1.39047 1.21320 1.23371 0.86646 0.78235 0.80468 0.82981 1.20708 1.21305 1.19905 1.22314 0.97752 0.97056 0.88955 1.61143 1.55278 1.07281 1.03558 1.22233 0.98637 0.96346 0.90283 1.23534 1.02192 0.95503 1.01262 1.86927 1.81985 1.19937 1.15034 1.22135 1.02025 0.94418 0.94076 0.87859 1.19266 0.94423 0.93069 1.00101 1.21061 0.93572 0.98869 0.98201 1.21132 0.99867 0.92545 1.00423 1.21175 0.95718 0.97726 0.99085 1.21117 0.94653 0.98272 0.99866 1.21061 1.00054 0.91685 0.99248 1.22296 0.93728 0.90801 0.99664 0.93034 0.93904 0.94194 0.96617 0.96973 0.93100 0.91138 0.94820 0.93813 0.89692 0.87820 0.89020 0.85704 0.86017 0.86154 0.85925 0.85780 0.93643 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 8.85 37.16 0.33 -1.97 16 2 C -0.08 -1.57 2.38 -90.62 -0.22 -1.78 16 3 H 0.05 1.12 6.68 -51.93 -0.35 0.77 16 4 C 0.03 0.69 4.45 -27.89 -0.12 0.57 16 5 C -0.51 -14.22 8.48 -34.44 -0.29 -14.51 16 6 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.07 1.09 4.41 -3.82 -0.02 1.07 16 14 N -0.55 -7.69 3.62 -235.02 -0.85 -8.54 16 15 C 0.05 0.64 5.42 -3.93 -0.02 0.62 16 16 C -0.08 -0.81 6.69 37.29 0.25 -0.57 16 17 S -0.27 -3.26 21.37 -107.50 -2.30 -5.56 16 18 C 0.00 0.03 2.96 -27.75 -0.08 -0.06 16 19 H 0.10 1.34 7.90 -51.93 -0.41 0.93 16 20 C -0.07 -0.80 4.81 -104.63 -0.50 -1.31 16 21 C -0.10 -1.12 8.79 -39.59 -0.35 -1.47 16 22 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 23 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 24 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 25 C -0.10 -1.13 9.67 -39.58 -0.38 -1.51 16 26 C 0.06 0.88 4.32 -3.92 -0.02 0.86 16 27 H 0.05 1.04 7.12 -51.93 -0.37 0.67 16 28 H 0.04 0.73 7.55 -51.93 -0.39 0.33 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.07 1.15 7.57 -51.93 -0.39 0.76 16 34 H 0.03 0.57 8.00 -51.93 -0.42 0.16 16 35 H 0.04 0.52 7.92 -51.93 -0.41 0.11 16 36 H 0.08 0.94 7.60 -51.93 -0.39 0.55 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.13 1.39 7.59 -52.48 -0.40 0.99 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.12 1.24 7.96 -52.48 -0.42 0.82 16 44 H 0.05 0.62 7.22 -51.93 -0.37 0.24 16 45 H 0.09 1.41 6.46 -51.93 -0.34 1.08 16 LS Contribution 365.75 15.07 5.51 5.51 Total: -1.00 -29.83 365.75 -12.18 -42.01 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.55 Total: -0.60 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -2.71 Total: -23.33 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: -0.11 Total: -34.66 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -2.30 Total: -5.56 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.83 -12.18 -42.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602472235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.095 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds