Wall clock time and date at job start Tue Mar 31 2020 09:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47430 * 2 1 4 4 C 1.52999 * 109.47645 * 120.00747 * 2 1 3 5 5 C 1.50706 * 109.46573 * 294.99747 * 4 2 1 6 6 H 1.07995 * 120.00167 * 359.72054 * 5 4 2 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47405 * 60.00219 * 9 7 5 11 11 H 1.48503 * 109.46845 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47399 * 299.99813 * 9 7 5 13 13 C 1.53009 * 109.46714 * 240.00649 * 2 1 3 14 14 N 1.46890 * 109.47140 * 64.99741 * 13 2 1 15 15 C 1.46898 * 110.99812 * 179.97438 * 14 13 2 16 16 C 1.53011 * 109.47265 * 180.02562 * 15 14 13 17 17 H 1.09003 * 109.30690 * 300.00128 * 16 15 14 18 18 S 1.81328 * 109.31176 * 59.61258 * 16 15 14 19 19 C 1.82080 * 100.82223 * 166.18836 * 18 16 15 20 20 C 1.52139 * 107.71599 * 295.85464 * 19 18 16 21 21 C 1.50230 * 113.59599 * 52.79241 * 20 19 18 22 22 C 1.39948 * 114.45741 * 159.81104 * 21 20 19 23 23 C 1.37454 * 121.52691 * 179.31888 * 22 21 20 24 24 C 1.38285 * 119.51366 * 359.93253 * 23 22 21 25 25 C 1.37576 * 119.25777 * 0.34913 * 24 23 22 26 26 C 1.36685 * 126.67192 * 339.44452 * 21 20 19 27 27 H 1.08993 * 109.47092 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46455 * 299.99253 * 1 2 3 29 29 H 1.08998 * 109.47381 * 59.98990 * 1 2 3 30 30 H 1.09000 * 109.47486 * 174.99813 * 4 2 1 31 31 H 1.09001 * 109.47362 * 54.99090 * 4 2 1 32 32 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.46685 * 185.00160 * 13 2 1 34 34 H 1.08996 * 109.46802 * 304.99580 * 13 2 1 35 35 H 1.00896 * 111.00546 * 303.95518 * 14 13 2 36 36 H 1.09004 * 109.47380 * 299.99873 * 15 14 13 37 37 H 1.08994 * 109.47511 * 60.00317 * 15 14 13 38 38 H 1.08999 * 109.81230 * 55.41005 * 19 18 16 39 39 H 1.09001 * 109.80819 * 176.23427 * 19 18 16 40 40 H 1.09007 * 108.65909 * 173.85667 * 20 19 18 41 41 H 1.09003 * 108.65928 * 291.85914 * 20 19 18 42 42 H 1.08000 * 119.23410 * 359.34304 * 22 21 20 43 43 H 1.08001 * 120.23869 * 179.90739 * 23 22 21 44 44 H 1.07998 * 120.37262 * 180.37571 * 24 23 22 45 45 H 1.07996 * 119.32522 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6415 0.0569 2.4765 6 1 1.0844 0.9765 2.3755 7 6 1.9927 -0.4026 3.7282 8 7 2.6758 -1.5196 3.8509 9 14 1.4979 0.5617 5.2496 10 1 0.0180 0.6682 5.3087 11 1 1.9931 -0.1383 6.4621 12 1 2.0900 1.9222 5.1877 13 6 2.0399 -0.7212 -1.2494 14 7 1.6513 0.0376 -2.4456 15 6 2.1256 -0.6263 -3.6672 16 6 1.7031 0.1919 -4.8892 17 1 0.6160 0.2678 -4.9139 18 16 2.4180 1.8544 -4.7741 19 6 2.1514 2.4594 -6.4706 20 6 2.9746 1.5881 -7.4076 21 6 2.7220 0.1169 -7.2378 22 6 3.0979 -0.6659 -8.3352 23 6 2.9442 -2.0318 -8.3301 24 6 2.4075 -2.6528 -7.2172 25 6 2.0304 -1.8885 -6.1372 26 6 2.1838 -0.4979 -6.1420 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 3.1265 -0.7996 1.2054 31 1 1.6055 -1.7199 1.2950 32 1 2.9231 -1.8425 4.7315 33 1 3.1263 -0.7994 -1.2058 34 1 1.6053 -1.7197 -1.2953 35 1 0.6528 0.1795 -2.4753 36 1 3.2125 -0.7035 -3.6402 37 1 1.6919 -1.6242 -3.7302 38 1 1.0950 2.3834 -6.7282 39 1 2.4766 3.4969 -6.5482 40 1 2.7423 1.8654 -8.4359 41 1 4.0316 1.7818 -7.2253 42 1 3.5190 -0.1857 -9.2062 43 1 3.2401 -2.6157 -9.1892 44 1 2.2861 -3.7257 -7.1958 45 1 1.6107 -2.3723 -5.2676 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602564498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:22:21 Heat of formation + Delta-G solvation = 5.791059 kcal Electronic energy + Delta-G solvation = -22066.763130 eV Core-core repulsion = 18981.073540 eV Total energy + Delta-G solvation = -3085.689589 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.05038 -37.19688 -34.87787 -34.67330 -32.77573 -31.49614 -29.96222 -28.27583 -26.77476 -25.49996 -24.23562 -23.46791 -22.23502 -21.36922 -20.77724 -18.91421 -16.93323 -16.85084 -16.34616 -15.82473 -15.66159 -15.17053 -14.83092 -14.62314 -14.39537 -14.22794 -13.61564 -13.53284 -13.19228 -13.01334 -12.79790 -12.56050 -12.18182 -12.08770 -11.97320 -11.74419 -11.56448 -11.41594 -11.25122 -10.84653 -10.81397 -10.65039 -10.31322 -10.17066 -9.89782 -9.66826 -9.13402 -9.01207 -8.95322 -8.87441 -8.29225 -8.13991 -7.59664 -5.94128 -3.95085 1.02572 1.06308 1.67459 2.44164 3.37321 3.41379 3.42667 3.44258 4.07443 4.36237 4.41543 4.51173 4.65381 4.70839 4.79431 4.84817 4.86803 5.04966 5.12851 5.19802 5.30592 5.41613 5.43930 5.50103 5.55684 5.67813 5.74868 5.77748 5.81957 5.90215 6.09657 6.17588 6.22190 6.26196 6.28018 6.49671 6.59927 6.69308 6.95938 7.14510 7.21340 7.35450 7.64743 7.73909 7.90073 8.06346 8.50314 9.11113 9.68078 11.17444 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.025979 B = 0.002609 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.542687 B =10727.580721 C =11417.526849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.083 4.083 3 H 0.067 0.933 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.066 3.934 14 N -0.683 5.683 15 C 0.077 3.923 16 C -0.017 4.017 17 H 0.096 0.904 18 S -0.188 6.188 19 C -0.106 4.106 20 C -0.079 4.079 21 C -0.069 4.069 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.114 4.114 26 C -0.072 4.072 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.015 0.985 31 H 0.014 0.986 32 H 0.260 0.740 33 H 0.067 0.933 34 H 0.023 0.977 35 H 0.339 0.661 36 H 0.082 0.918 37 H 0.043 0.957 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.346 1.598 -27.712 27.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.102 4.102 3 H 0.085 0.915 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.062 4.062 14 N -0.315 5.315 15 C -0.053 4.053 16 C -0.146 4.146 17 H 0.114 0.886 18 S 0.040 5.960 19 C -0.254 4.254 20 C -0.117 4.117 21 C -0.070 4.070 22 C -0.141 4.141 23 C -0.136 4.136 24 C -0.139 4.139 25 C -0.134 4.134 26 C -0.074 4.074 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.033 0.967 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.158 0.842 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.127 0.873 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.248 2.466 -26.619 26.734 hybrid contribution -1.386 -1.048 -0.213 1.751 sum -1.635 1.418 -26.832 26.919 Atomic orbital electron populations 1.21737 0.96720 1.00313 1.00314 1.21213 0.94813 1.00199 0.93988 0.91501 1.19103 0.96123 0.95310 0.90370 1.21208 1.34762 1.08108 0.90988 0.92603 1.25019 0.95340 0.95112 0.99085 1.69957 1.39071 1.21281 1.23447 0.86691 0.78839 0.80177 0.82488 1.20324 1.21405 1.20254 1.22134 1.00449 0.94247 0.89375 1.60515 1.19659 1.50330 1.00971 1.21919 1.01712 0.93928 0.87763 1.22089 1.02160 0.95448 0.94950 0.88614 1.87712 1.80511 1.14711 1.13037 1.23371 1.03087 1.02626 0.96364 1.20416 1.01358 0.90164 0.99811 1.19365 0.98704 0.95551 0.93346 1.21331 1.00752 0.94102 0.97958 1.21015 0.99456 0.94704 0.98451 1.21069 0.99228 0.99929 0.93673 1.21550 0.99929 0.93015 0.98857 1.19365 1.00076 0.93995 0.93995 0.94134 0.91865 0.94935 0.96683 0.96813 0.93072 0.91408 0.95879 0.84212 0.89934 0.93886 0.89934 0.87296 0.90253 0.89468 0.86206 0.85973 0.85781 0.85556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.77 37.16 0.33 -2.18 16 2 C -0.08 -1.72 2.54 -90.61 -0.23 -1.96 16 3 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 4 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.52 8.40 -34.44 -0.29 -14.81 16 6 H 0.06 1.54 7.07 -52.49 -0.37 1.17 16 7 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 9 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.07 1.16 5.14 -3.82 -0.02 1.14 16 14 N -0.68 -10.15 6.01 -113.78 -0.68 -10.83 16 15 C 0.08 0.97 4.59 -3.82 -0.02 0.95 16 16 C -0.02 -0.20 2.83 -27.79 -0.08 -0.28 16 17 H 0.10 1.04 8.14 -51.92 -0.42 0.62 16 18 S -0.19 -2.32 21.25 -107.50 -2.28 -4.61 16 19 C -0.11 -0.92 6.57 36.72 0.24 -0.68 16 20 C -0.08 -0.63 5.29 -28.55 -0.15 -0.78 16 21 C -0.07 -0.67 5.73 -104.77 -0.60 -1.27 16 22 C -0.12 -1.04 9.39 -39.23 -0.37 -1.41 16 23 C -0.12 -0.96 10.05 -39.85 -0.40 -1.36 16 24 C -0.12 -1.05 10.07 -39.81 -0.40 -1.45 16 25 C -0.11 -1.13 8.90 -39.20 -0.35 -1.48 16 26 C -0.07 -0.77 5.50 -104.47 -0.57 -1.34 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 29 H 0.03 0.51 6.68 -51.93 -0.35 0.17 16 30 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.34 4.76 6.98 -39.29 -0.27 4.48 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.04 0.50 6.09 -51.93 -0.32 0.18 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.48 7.97 -51.92 -0.41 0.06 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.12 0.76 7.94 -52.49 -0.42 0.34 16 43 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.13 1.15 5.95 -52.49 -0.31 0.84 16 LS Contribution 364.72 15.07 5.50 5.50 Total: -1.00 -30.91 364.72 -12.33 -43.25 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -7.44 Total: 1.09 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -3.13 Total: -24.79 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.05 Total: -37.39 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: -2.32 SS G_CDS: -2.28 Total: -4.61 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.91 -12.33 -43.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602564498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.039 kcal (2) G-P(sol) polarization free energy of solvation -30.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds