Wall clock time and date at job start Tue Mar 31 2020 09:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47430 * 2 1 4 4 C 1.52999 * 109.47645 * 120.00747 * 2 1 3 5 5 C 1.50706 * 109.46573 * 294.99747 * 4 2 1 6 6 H 1.07995 * 120.00167 * 359.72054 * 5 4 2 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47405 * 60.00219 * 9 7 5 11 11 H 1.48503 * 109.46845 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47399 * 299.99813 * 9 7 5 13 13 C 1.53009 * 109.46714 * 240.00649 * 2 1 3 14 14 N 1.46890 * 109.47140 * 64.99741 * 13 2 1 15 15 C 1.46898 * 110.99812 * 179.97438 * 14 13 2 16 16 C 1.53011 * 109.47265 * 180.02562 * 15 14 13 17 17 H 1.09003 * 109.30690 * 300.00128 * 16 15 14 18 18 S 1.81328 * 109.31176 * 59.61258 * 16 15 14 19 19 C 1.82080 * 100.82223 * 166.18836 * 18 16 15 20 20 C 1.52139 * 107.71599 * 295.85464 * 19 18 16 21 21 C 1.50230 * 113.59599 * 52.79241 * 20 19 18 22 22 C 1.39948 * 114.45741 * 159.81104 * 21 20 19 23 23 C 1.37454 * 121.52691 * 179.31888 * 22 21 20 24 24 C 1.38285 * 119.51366 * 359.93253 * 23 22 21 25 25 C 1.37576 * 119.25777 * 0.34913 * 24 23 22 26 26 C 1.36685 * 126.67192 * 339.44452 * 21 20 19 27 27 H 1.08993 * 109.47092 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46455 * 299.99253 * 1 2 3 29 29 H 1.08998 * 109.47381 * 59.98990 * 1 2 3 30 30 H 1.09000 * 109.47486 * 174.99813 * 4 2 1 31 31 H 1.09001 * 109.47362 * 54.99090 * 4 2 1 32 32 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.46685 * 185.00160 * 13 2 1 34 34 H 1.08996 * 109.46802 * 304.99580 * 13 2 1 35 35 H 1.00896 * 111.00546 * 303.95518 * 14 13 2 36 36 H 1.09004 * 109.47380 * 299.99873 * 15 14 13 37 37 H 1.08994 * 109.47511 * 60.00317 * 15 14 13 38 38 H 1.08999 * 109.81230 * 55.41005 * 19 18 16 39 39 H 1.09001 * 109.80819 * 176.23427 * 19 18 16 40 40 H 1.09007 * 108.65909 * 173.85667 * 20 19 18 41 41 H 1.09003 * 108.65928 * 291.85914 * 20 19 18 42 42 H 1.08000 * 119.23410 * 359.34304 * 22 21 20 43 43 H 1.08001 * 120.23869 * 179.90739 * 23 22 21 44 44 H 1.07998 * 120.37262 * 180.37571 * 24 23 22 45 45 H 1.07996 * 119.32522 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6415 0.0569 2.4765 6 1 1.0844 0.9765 2.3755 7 6 1.9927 -0.4026 3.7282 8 7 2.6758 -1.5196 3.8509 9 14 1.4979 0.5617 5.2496 10 1 0.0180 0.6682 5.3087 11 1 1.9931 -0.1383 6.4621 12 1 2.0900 1.9222 5.1877 13 6 2.0399 -0.7212 -1.2494 14 7 1.6513 0.0376 -2.4456 15 6 2.1256 -0.6263 -3.6672 16 6 1.7031 0.1919 -4.8892 17 1 0.6160 0.2678 -4.9139 18 16 2.4180 1.8544 -4.7741 19 6 2.1514 2.4594 -6.4706 20 6 2.9746 1.5881 -7.4076 21 6 2.7220 0.1169 -7.2378 22 6 3.0979 -0.6659 -8.3352 23 6 2.9442 -2.0318 -8.3301 24 6 2.4075 -2.6528 -7.2172 25 6 2.0304 -1.8885 -6.1372 26 6 2.1838 -0.4979 -6.1420 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 3.1265 -0.7996 1.2054 31 1 1.6055 -1.7199 1.2950 32 1 2.9231 -1.8425 4.7315 33 1 3.1263 -0.7994 -1.2058 34 1 1.6053 -1.7197 -1.2953 35 1 0.6528 0.1795 -2.4753 36 1 3.2125 -0.7035 -3.6402 37 1 1.6919 -1.6242 -3.7302 38 1 1.0950 2.3834 -6.7282 39 1 2.4766 3.4969 -6.5482 40 1 2.7423 1.8654 -8.4359 41 1 4.0316 1.7818 -7.2253 42 1 3.5190 -0.1857 -9.2062 43 1 3.2401 -2.6157 -9.1892 44 1 2.2861 -3.7257 -7.1958 45 1 1.6107 -2.3723 -5.2676 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602564498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:22:21 Heat of formation + Delta-G solvation = -10.167526 kcal Electronic energy + Delta-G solvation = -22067.455146 eV Core-core repulsion = 18981.073540 eV Total energy + Delta-G solvation = -3086.381606 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.73577 -38.58371 -36.27816 -35.34687 -34.49947 -32.90601 -30.64647 -29.43922 -28.52536 -26.83723 -25.41642 -24.28069 -23.86777 -22.26421 -21.47528 -20.62182 -18.54841 -17.71276 -17.59325 -16.82945 -16.63447 -16.42533 -16.01506 -15.74400 -15.56337 -15.37938 -14.77801 -14.47062 -14.39258 -14.16003 -13.84507 -13.60426 -13.49229 -13.39113 -13.26555 -12.94605 -12.74508 -12.73469 -12.56576 -12.35091 -12.20859 -12.04199 -11.91852 -11.58349 -11.42815 -11.07192 -10.94470 -10.70531 -10.52515 -9.68807 -9.58017 -9.34651 -8.55349 -8.16949 -6.26063 0.33519 0.40696 0.85236 1.40149 1.43273 1.50820 1.63862 2.42489 2.74973 3.08515 3.16328 3.61368 3.76260 3.81690 3.88235 4.00899 4.17193 4.22066 4.23251 4.24938 4.26872 4.43761 4.48451 4.55398 4.61166 4.74962 4.77148 4.79885 4.83541 4.87372 4.93672 5.04010 5.04880 5.15575 5.23801 5.38546 5.48988 5.52494 5.55319 5.58085 5.60013 5.79820 5.89610 6.01924 6.05821 6.31524 6.47198 6.89584 7.42019 8.95047 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.025979 B = 0.002609 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.542687 B =10727.580721 C =11417.526849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 H 0.053 0.947 4 C 0.034 3.966 5 C -0.530 4.530 6 H 0.060 0.940 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.081 3.919 14 N -0.684 5.684 15 C 0.082 3.918 16 C 0.001 3.999 17 H 0.099 0.901 18 S -0.257 6.257 19 C -0.088 4.088 20 C -0.077 4.077 21 C -0.082 4.082 22 C -0.128 4.128 23 C -0.120 4.120 24 C -0.128 4.128 25 C -0.129 4.129 26 C -0.092 4.092 27 H 0.042 0.958 28 H 0.045 0.955 29 H 0.066 0.934 30 H -0.016 1.016 31 H -0.009 1.009 32 H 0.262 0.738 33 H 0.053 0.947 34 H 0.028 0.972 35 H 0.346 0.654 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.123 0.877 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.141 0.859 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.259 2.300 -29.766 29.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.093 4.093 3 H 0.072 0.928 4 C -0.004 4.004 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.194 1.194 13 C -0.048 4.048 14 N -0.316 5.316 15 C -0.048 4.048 16 C -0.128 4.128 17 H 0.117 0.883 18 S -0.029 6.029 19 C -0.236 4.236 20 C -0.116 4.116 21 C -0.082 4.082 22 C -0.145 4.145 23 C -0.138 4.138 24 C -0.146 4.146 25 C -0.148 4.148 26 C -0.094 4.094 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.002 0.998 31 H 0.010 0.990 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.166 0.834 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.142 0.858 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.161 0.839 43 H 0.164 0.836 44 H 0.159 0.841 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.174 3.177 -28.694 28.894 hybrid contribution -1.062 -1.294 0.322 1.705 sum -2.235 1.883 -28.372 28.522 Atomic orbital electron populations 1.21634 0.94805 1.00704 1.01085 1.20993 0.96319 0.98839 0.93125 0.92846 1.18991 0.94080 0.94625 0.92667 1.21614 1.34647 1.08415 0.92088 0.92145 1.25958 0.95243 0.96123 1.02663 1.70095 1.40249 1.22988 1.24340 0.85561 0.78997 0.78729 0.78141 1.19071 1.20964 1.19399 1.21802 0.99417 0.94274 0.89342 1.60395 1.20191 1.50243 1.00779 1.21877 1.00730 0.94822 0.87358 1.21901 1.02037 0.94157 0.94691 0.88275 1.87861 1.81147 1.16418 1.17485 1.23416 1.03761 1.03298 0.93131 1.20440 1.01049 0.89134 1.00944 1.19636 0.98534 0.96628 0.93413 1.21636 1.00263 0.94369 0.98271 1.21371 0.98539 0.94987 0.98932 1.21348 0.98873 1.00856 0.93532 1.21653 1.00655 0.92990 0.99536 1.19403 1.01559 0.94360 0.94088 0.93904 0.93631 0.91555 0.99756 0.99035 0.92932 0.92889 0.95423 0.83408 0.91558 0.92469 0.89254 0.85844 0.87565 0.89641 0.83907 0.83596 0.84141 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.62 8.77 71.98 0.63 -3.99 16 2 C -0.07 -3.12 2.54 -10.79 -0.03 -3.14 16 3 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 4 C 0.03 1.83 4.45 29.85 0.13 1.96 16 5 C -0.53 -30.61 8.40 25.60 0.22 -30.40 16 6 H 0.06 3.36 7.07 -2.91 -0.02 3.34 16 7 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 8 N -0.94 -58.20 13.29 21.45 0.28 -57.92 16 9 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 13 C 0.08 2.88 5.14 86.31 0.44 3.32 16 14 N -0.68 -20.16 6.01 -513.88 -3.09 -23.25 16 15 C 0.08 2.06 4.59 86.31 0.40 2.46 16 16 C 0.00 0.02 2.83 29.91 0.08 0.11 16 17 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 18 S -0.26 -6.27 21.25 -56.49 -1.20 -7.47 16 19 C -0.09 -1.37 6.57 71.70 0.47 -0.90 16 20 C -0.08 -1.06 5.29 29.42 0.16 -0.90 16 21 C -0.08 -1.43 5.73 -19.96 -0.11 -1.54 16 22 C -0.13 -1.82 9.39 22.50 0.21 -1.61 16 23 C -0.12 -1.66 10.05 22.10 0.22 -1.43 16 24 C -0.13 -2.01 10.07 22.12 0.22 -1.79 16 25 C -0.13 -2.42 8.90 22.52 0.20 -2.22 16 26 C -0.09 -1.86 5.50 -19.77 -0.11 -1.97 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 28 H 0.04 1.83 6.95 -2.38 -0.02 1.82 16 29 H 0.07 1.99 6.68 -2.39 -0.02 1.98 16 30 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 31 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 32 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.35 9.32 6.98 -89.70 -0.63 8.69 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.06 1.28 6.09 -2.39 -0.01 1.27 16 38 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.11 0.91 7.97 -2.38 -0.02 0.89 16 41 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.14 1.31 7.94 -2.91 -0.02 1.28 16 43 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 44 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 45 H 0.13 2.23 5.95 -2.91 -0.02 2.22 16 Total: -1.00 -68.08 364.72 1.96 -66.13 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.34 Total: 16.97 kcal Atomic # 6 Polarization: -45.36 SS G_CDS: 3.60 Total: -41.76 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -2.81 Total: -81.17 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 16 Polarization: -6.27 SS G_CDS: -1.20 Total: -7.47 kcal Total: -68.08 1.96 -66.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602564498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.959 kcal (2) G-P(sol) polarization free energy of solvation -68.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds