Wall clock time and date at job start Tue Mar 31 2020 08:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47279 * 2 1 4 4 H 1.08999 * 109.46898 * 55.00021 * 3 2 1 5 5 C 1.50698 * 109.46705 * 175.00342 * 3 2 1 6 6 H 1.07999 * 119.99751 * 120.00738 * 5 3 2 7 7 C 1.37880 * 119.99821 * 299.99480 * 5 3 2 8 8 N 1.31509 * 119.99965 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99733 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46863 * 90.00479 * 9 7 5 11 11 H 1.48500 * 109.47203 * 210.00180 * 9 7 5 12 12 H 1.48497 * 109.47418 * 330.00382 * 9 7 5 13 13 N 1.46495 * 109.46950 * 295.00242 * 3 2 1 14 14 C 1.34770 * 120.00437 * 85.00182 * 13 3 2 15 15 O 1.21288 * 120.00063 * 5.26094 * 14 13 3 16 16 C 1.50698 * 120.00477 * 185.26081 * 14 13 3 17 17 C 1.50696 * 112.90751 * 316.18337 * 16 14 13 18 18 C 1.38244 * 119.97307 * 283.39493 * 17 16 14 19 19 C 1.38202 * 120.02885 * 179.76804 * 18 17 16 20 20 C 1.38464 * 119.96697 * 0.50822 * 19 18 17 21 21 F 1.35102 * 120.02156 * 179.76502 * 20 19 18 22 22 C 1.38457 * 119.95259 * 359.75170 * 20 19 18 23 23 C 1.38200 * 119.97255 * 359.97438 * 22 20 19 24 24 C 1.53785 * 113.61824 * 184.92582 * 16 14 13 25 25 C 1.53780 * 87.17438 * 270.92718 * 24 16 14 26 26 C 1.53779 * 87.08322 * 334.52387 * 25 24 16 27 27 H 1.08999 * 109.47542 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46677 * 300.00049 * 1 2 3 29 29 H 1.09002 * 109.47012 * 59.99970 * 1 2 3 30 30 H 1.09000 * 109.46677 * 239.99951 * 2 1 3 31 31 H 1.09001 * 109.47190 * 120.00550 * 2 1 3 32 32 H 0.97000 * 119.99608 * 179.97438 * 8 7 5 33 33 H 0.97007 * 120.00009 * 264.99755 * 13 3 2 34 34 H 1.08005 * 119.98868 * 0.02631 * 18 17 16 35 35 H 1.08002 * 120.01657 * 180.25784 * 19 18 17 36 36 H 1.08002 * 120.01292 * 180.02562 * 22 20 19 37 37 H 1.07996 * 119.98479 * 180.02562 * 23 22 20 38 38 H 1.08997 * 113.61425 * 156.33583 * 24 16 14 39 39 H 1.09005 * 113.60830 * 25.52110 * 24 16 14 40 40 H 1.09000 * 113.61283 * 89.06819 * 25 24 16 41 41 H 1.08997 * 113.61448 * 219.89148 * 25 24 16 42 42 H 1.09003 * 113.61601 * 139.97435 * 26 25 24 43 43 H 1.08998 * 113.61729 * 270.80084 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4441 0.1237 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8782 1.2279 8 7 3.4062 0.3366 2.1728 9 14 6.0050 0.8809 1.3816 10 1 6.4418 2.1139 2.0848 11 1 6.4396 -0.3101 2.1548 12 1 6.6136 0.8413 0.0277 13 7 1.6525 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3669 15 8 -0.3027 2.7169 -0.4058 16 6 -0.0091 3.2331 -2.6899 17 6 1.0661 4.0382 -3.3731 18 6 1.3547 5.3173 -2.9352 19 6 2.3438 6.0548 -3.5578 20 6 3.0387 5.5159 -4.6274 21 9 4.0025 6.2377 -5.2399 22 6 2.7452 4.2368 -5.0685 23 6 1.7595 3.4991 -4.4406 24 6 -1.3687 3.9489 -2.6273 25 6 -2.0139 2.5874 -2.9354 26 6 -0.6872 2.1996 -3.6093 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8293 -0.0619 2.9494 33 1 2.2720 2.1231 -1.9978 34 1 0.8097 5.7389 -2.1035 35 1 2.5718 7.0525 -3.2129 36 1 3.2868 3.8153 -5.9024 37 1 1.5307 2.5011 -4.7843 38 1 -1.5100 4.6876 -3.4163 39 1 -1.6140 4.3345 -1.6377 40 1 -2.2396 1.9999 -2.0455 41 1 -2.8546 2.6490 -3.6265 42 1 -0.3811 1.1723 -3.4119 43 1 -0.6426 2.4587 -4.6671 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613037894.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:37 Heat of formation + Delta-G solvation = -48.657580 kcal Electronic energy + Delta-G solvation = -25789.072361 eV Core-core repulsion = 22134.808525 eV Total energy + Delta-G solvation = -3654.263836 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.90228 -40.78996 -38.49227 -37.04037 -34.90700 -32.43095 -31.25307 -31.21694 -30.41399 -27.23890 -25.84507 -25.54967 -23.14286 -22.79253 -21.94487 -21.21766 -19.54689 -18.80861 -17.77570 -17.11234 -16.32139 -16.23809 -15.62794 -15.48362 -15.19441 -14.75984 -14.51042 -14.20694 -13.95379 -13.60581 -13.34301 -13.17930 -12.73856 -12.63128 -12.38579 -12.16019 -12.08899 -11.71579 -11.45248 -11.27481 -11.10567 -10.96138 -10.85270 -10.81003 -10.43540 -10.31604 -10.23504 -10.13920 -9.66796 -9.18005 -9.13973 -9.04747 -8.50962 -8.41979 -7.81353 -6.12740 -4.21644 1.08877 1.20048 3.24224 3.27797 3.31285 3.33458 3.51682 4.03061 4.23242 4.36113 4.52413 4.65322 4.70488 4.79620 4.85628 4.95326 5.18690 5.24710 5.26597 5.41082 5.67135 5.68679 5.79415 5.86533 5.95887 5.96086 6.07831 6.14712 6.15559 6.24727 6.34712 6.40202 6.48294 6.50819 6.61873 6.84222 6.99752 7.16516 7.33666 7.45024 7.61404 7.72665 7.89763 8.17242 8.67915 8.78015 9.12953 9.45836 10.92603 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011146 B = 0.005749 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.493366 B = 4869.658157 C = 6786.135185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.531 3.469 15 O -0.543 6.543 16 C -0.073 4.073 17 C -0.071 4.071 18 C -0.076 4.076 19 C -0.149 4.149 20 C 0.091 3.909 21 F -0.144 7.144 22 C -0.150 4.150 23 C -0.086 4.086 24 C -0.112 4.112 25 C -0.137 4.137 26 C -0.121 4.121 27 H 0.024 0.976 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.031 0.969 31 H 0.100 0.900 32 H 0.264 0.736 33 H 0.388 0.612 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.965 6.456 -14.234 16.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.347 5.347 14 C 0.315 3.685 15 O -0.422 6.422 16 C -0.076 4.076 17 C -0.072 4.072 18 C -0.094 4.094 19 C -0.168 4.168 20 C 0.072 3.928 21 F -0.122 7.122 22 C -0.169 4.169 23 C -0.104 4.104 24 C -0.149 4.149 25 C -0.174 4.174 26 C -0.159 4.159 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.220 0.780 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.416 6.380 -13.349 16.127 hybrid contribution 1.686 0.117 -0.349 1.726 sum -4.730 6.497 -13.698 15.882 Atomic orbital electron populations 1.21830 0.98510 0.98203 1.01010 1.21937 0.92480 0.99873 1.02344 1.18789 0.94247 0.89059 0.81086 0.93215 1.21223 0.90752 1.38878 1.06244 0.92196 1.24863 0.98505 0.94807 0.95387 1.69886 1.35086 1.37679 1.09349 0.86491 0.85013 0.77660 0.78221 1.20564 1.21048 1.19850 1.46432 1.14321 1.55484 1.18507 1.19414 0.82700 0.78545 0.87844 1.90659 1.54170 1.58616 1.38750 1.21135 0.93631 0.97652 0.95181 1.19601 0.97156 0.94403 0.96000 1.20881 0.96226 0.93575 0.98756 1.21111 0.97730 1.01560 0.96384 1.17725 0.89540 0.90928 0.94579 1.91485 1.61199 1.77512 1.82038 1.21095 1.00159 0.93337 1.02307 1.20921 0.94596 0.99847 0.95008 1.22807 0.92368 0.96788 1.02960 1.22794 0.96230 0.97397 1.00995 1.22990 0.96082 0.98570 0.98242 0.95675 0.93147 0.94467 0.95036 0.88213 0.92583 0.77995 0.84981 0.84804 0.84769 0.84735 0.89872 0.89865 0.89264 0.91421 0.90733 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.59 37.16 0.32 -2.65 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.68 2.25 -69.09 -0.16 6.53 16 4 H 0.05 1.43 7.51 -51.93 -0.39 1.04 16 5 C -0.53 -14.03 8.73 -34.44 -0.30 -14.33 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.56 11.29 55.43 0.63 -23.93 16 9 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 13 N -0.70 -14.28 4.93 -54.94 -0.27 -14.55 16 14 C 0.53 10.02 5.10 -10.99 -0.06 9.96 16 15 O -0.54 -12.03 13.13 5.55 0.07 -11.95 16 16 C -0.07 -1.01 1.01 -155.85 -0.16 -1.17 16 17 C -0.07 -0.92 4.13 -104.62 -0.43 -1.35 16 18 C -0.08 -0.98 9.39 -39.59 -0.37 -1.35 16 19 C -0.15 -1.82 10.03 -39.51 -0.40 -2.22 16 20 C 0.09 1.15 7.30 -39.42 -0.29 0.86 16 21 F -0.14 -1.88 17.27 2.25 0.04 -1.84 16 22 C -0.15 -1.72 10.03 -39.51 -0.40 -2.11 16 23 C -0.09 -0.99 8.89 -39.59 -0.35 -1.34 16 24 C -0.11 -1.40 6.65 -25.92 -0.17 -1.57 16 25 C -0.14 -1.65 7.71 -25.92 -0.20 -1.85 16 26 C -0.12 -1.43 6.21 -25.77 -0.16 -1.59 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 1.16 7.92 -51.93 -0.41 0.75 16 29 H 0.04 0.76 5.76 -51.93 -0.30 0.46 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.39 7.26 7.80 -40.82 -0.32 6.95 16 34 H 0.13 1.64 8.04 -52.48 -0.42 1.22 16 35 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.13 1.31 6.99 -52.49 -0.37 0.95 16 38 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 39 H 0.08 1.18 7.50 -51.93 -0.39 0.79 16 40 H 0.09 1.27 7.88 -51.93 -0.41 0.86 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 43 H 0.09 0.85 7.42 -51.93 -0.39 0.47 16 LS Contribution 349.77 15.07 5.27 5.27 Total: -1.00 -29.12 349.77 -8.84 -37.96 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.20 Total: 9.02 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -3.36 Total: -15.65 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.36 Total: -38.48 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.07 Total: -11.95 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.12 -8.84 -37.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037894.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.698 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds