Wall clock time and date at job start Tue Mar 31 2020 08:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47211 * 2 1 4 4 H 1.09001 * 109.47448 * 304.99930 * 3 2 1 5 5 C 1.50697 * 109.47489 * 184.99999 * 3 2 1 6 6 H 1.08003 * 120.00174 * 240.00158 * 5 3 2 7 7 C 1.37877 * 120.00093 * 59.99594 * 5 3 2 8 8 N 1.31514 * 119.99979 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00030 * 180.02562 * 7 5 3 10 10 H 1.48489 * 109.47347 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46983 * 120.00534 * 9 7 5 12 12 H 1.48506 * 109.46995 * 240.00130 * 9 7 5 13 13 N 1.46502 * 109.47306 * 65.00006 * 3 2 1 14 14 C 1.34777 * 119.99737 * 275.00181 * 13 3 2 15 15 O 1.21275 * 120.00115 * 4.24952 * 14 13 3 16 16 C 1.50703 * 119.99672 * 184.24815 * 14 13 3 17 17 C 1.50696 * 112.85128 * 283.78316 * 16 14 13 18 18 C 1.38246 * 119.97397 * 135.53642 * 17 16 14 19 19 C 1.38203 * 120.02526 * 179.76758 * 18 17 16 20 20 C 1.38465 * 119.97021 * 0.50919 * 19 18 17 21 21 F 1.35107 * 120.02214 * 179.76765 * 20 19 18 22 22 C 1.38457 * 119.95166 * 359.74235 * 20 19 18 23 23 C 1.38195 * 119.97319 * 0.02562 * 22 20 19 24 24 C 1.53777 * 113.61684 * 54.98240 * 16 14 13 25 25 C 1.53780 * 87.08462 * 89.11303 * 24 16 14 26 26 C 1.53784 * 87.17247 * 25.38996 * 25 24 16 27 27 H 1.09002 * 109.47048 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47384 * 299.99977 * 1 2 3 29 29 H 1.08997 * 109.47193 * 59.99962 * 1 2 3 30 30 H 1.08997 * 109.47133 * 239.99954 * 2 1 3 31 31 H 1.08997 * 109.47193 * 120.00038 * 2 1 3 32 32 H 0.96994 * 120.00413 * 179.97438 * 8 7 5 33 33 H 0.96997 * 120.00517 * 94.99807 * 13 3 2 34 34 H 1.07992 * 119.98793 * 0.02562 * 18 17 16 35 35 H 1.07993 * 120.01564 * 180.25260 * 19 18 17 36 36 H 1.07993 * 120.01172 * 180.02562 * 22 20 19 37 37 H 1.08000 * 119.98496 * 180.02562 * 23 22 20 38 38 H 1.09007 * 113.61381 * 334.56624 * 24 16 14 39 39 H 1.08998 * 113.69648 * 203.67693 * 24 16 14 40 40 H 1.08995 * 113.61698 * 139.98010 * 25 24 16 41 41 H 1.08998 * 113.61517 * 270.80403 * 25 24 16 42 42 H 1.09002 * 113.61108 * 89.15264 * 26 25 24 43 43 H 1.08990 * 113.61880 * 220.05801 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3373 -2.1732 9 14 6.0050 0.8801 -1.3810 10 1 6.5988 1.5442 -0.1931 11 1 6.4962 -0.5190 -1.4626 12 1 6.3999 1.6157 -2.6091 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3677 2.5657 0.4633 16 6 0.0716 3.4208 2.6186 17 6 -0.2479 2.5136 3.7787 18 6 0.2652 2.7890 5.0325 19 6 -0.0311 1.9603 6.0982 20 6 -0.8335 0.8482 5.9074 21 9 -1.1199 0.0348 6.9475 22 6 -1.3426 0.5705 4.6501 23 6 -1.0489 1.4032 3.5870 24 6 1.0619 4.5437 2.9693 25 6 0.1999 5.4699 2.0953 26 6 -0.9771 4.5241 2.3874 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8292 -0.0605 -2.9502 33 1 2.2718 2.1231 1.9978 34 1 0.8943 3.6542 5.1802 35 1 0.3665 2.1779 7.0784 36 1 -1.9689 -0.2964 4.5003 37 1 -1.4462 1.1870 2.6063 38 1 2.0649 4.3803 2.5750 39 1 1.0612 4.8145 4.0251 40 1 0.0712 6.4687 2.5122 41 1 0.4988 5.4840 1.0472 42 1 -1.5375 4.7886 3.2841 43 1 -1.6178 4.3449 1.5241 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613037895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:40 Heat of formation + Delta-G solvation = -44.047163 kcal Electronic energy + Delta-G solvation = -25766.655137 eV Core-core repulsion = 22112.591224 eV Total energy + Delta-G solvation = -3654.063913 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.92941 -40.82750 -38.48720 -37.12693 -34.95185 -32.38046 -31.24097 -31.05577 -30.68617 -27.20436 -25.87216 -25.50032 -23.33110 -22.82460 -21.92316 -21.20579 -19.53369 -18.74518 -17.86254 -17.13752 -16.25133 -16.20019 -15.63970 -15.51127 -15.44473 -14.86919 -14.52624 -14.13996 -13.95828 -13.54301 -13.34893 -13.15372 -12.85974 -12.68591 -12.45275 -12.23083 -11.88245 -11.66068 -11.51481 -11.27346 -11.12434 -10.96409 -10.86790 -10.77159 -10.44964 -10.31649 -10.23183 -10.14597 -9.60827 -9.15753 -9.09816 -9.03461 -8.53342 -8.45614 -7.82613 -6.14147 -4.23448 1.06821 1.18559 3.22059 3.28371 3.30695 3.32937 3.50016 3.96864 4.20153 4.34185 4.54066 4.67208 4.71368 4.77351 4.83503 4.89848 5.16419 5.17719 5.28385 5.35727 5.60757 5.67123 5.80932 5.87555 5.95374 5.96828 6.06948 6.14122 6.16851 6.22651 6.39264 6.43492 6.47572 6.52107 6.66635 6.83048 7.05321 7.18859 7.36168 7.44153 7.61102 7.72495 7.88589 8.16975 8.65887 8.75829 9.10801 9.44176 10.91163 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.014539 B = 0.004484 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.352149 B = 6242.867960 C = 6770.180611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.701 5.701 14 C 0.530 3.470 15 O -0.542 6.542 16 C -0.071 4.071 17 C -0.065 4.065 18 C -0.089 4.089 19 C -0.153 4.153 20 C 0.090 3.910 21 F -0.144 7.144 22 C -0.149 4.149 23 C -0.077 4.077 24 C -0.133 4.133 25 C -0.140 4.140 26 C -0.111 4.111 27 H 0.020 0.980 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.388 0.612 34 H 0.138 0.862 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.754 5.961 14.234 16.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.347 5.347 14 C 0.313 3.687 15 O -0.421 6.421 16 C -0.074 4.074 17 C -0.066 4.066 18 C -0.107 4.107 19 C -0.172 4.172 20 C 0.071 3.929 21 F -0.123 7.123 22 C -0.167 4.167 23 C -0.095 4.095 24 C -0.170 4.170 25 C -0.177 4.177 26 C -0.149 4.149 27 H 0.039 0.961 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.220 0.780 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.288 5.750 13.396 16.298 hybrid contribution 1.286 -0.379 0.466 1.419 sum -6.003 5.371 13.862 16.032 Atomic orbital electron populations 1.21892 0.98335 0.97884 1.01384 1.21923 0.92665 0.99813 1.02206 1.18794 0.94192 0.89229 0.80775 0.93429 1.21259 0.90711 1.38951 1.06232 0.92087 1.24874 0.98539 0.94790 0.95401 1.69900 1.35025 1.37666 1.09327 0.86423 0.84962 0.77799 0.78102 1.19752 1.20884 1.20884 1.46445 1.14524 1.55420 1.18338 1.19429 0.82950 0.79514 0.86778 1.90667 1.49581 1.60894 1.40922 1.21071 0.99876 0.93583 0.92891 1.19473 0.97716 0.95595 0.93783 1.20993 0.99025 0.99438 0.91268 1.21076 1.00485 0.95085 1.00544 1.17738 0.99866 0.90887 0.84415 1.91484 1.92166 1.71763 1.56847 1.21131 1.02554 1.01654 0.91410 1.21048 0.96356 0.93016 0.99040 1.23132 0.98540 0.94730 1.00596 1.22814 0.96487 0.97688 1.00729 1.22876 0.96196 0.93275 1.02553 0.96061 0.93963 0.93184 0.88373 0.95117 0.92624 0.77968 0.84461 0.84845 0.84786 0.84611 0.90201 0.89076 0.91180 0.89679 0.89785 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.47 37.16 0.31 -2.70 16 2 C -0.13 -3.05 5.45 -26.74 -0.15 -3.20 16 3 C 0.27 6.64 2.24 -69.09 -0.15 6.49 16 4 H 0.05 1.35 7.64 -51.93 -0.40 0.95 16 5 C -0.53 -13.77 8.73 -34.44 -0.30 -14.07 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.36 11.29 55.43 0.63 -23.73 16 9 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.70 -14.00 4.80 -54.94 -0.26 -14.27 16 14 C 0.53 9.84 4.31 -10.98 -0.05 9.80 16 15 O -0.54 -11.83 12.93 5.56 0.07 -11.76 16 16 C -0.07 -0.99 1.04 -155.91 -0.16 -1.15 16 17 C -0.07 -0.85 5.08 -104.62 -0.53 -1.38 16 18 C -0.09 -0.98 9.23 -39.59 -0.37 -1.35 16 19 C -0.15 -1.67 10.03 -39.51 -0.40 -2.07 16 20 C 0.09 1.12 7.30 -39.42 -0.29 0.83 16 21 F -0.14 -1.84 17.27 2.25 0.04 -1.80 16 22 C -0.15 -1.89 10.03 -39.52 -0.40 -2.28 16 23 C -0.08 -1.06 9.27 -39.59 -0.37 -1.43 16 24 C -0.13 -1.54 6.69 -25.92 -0.17 -1.72 16 25 C -0.14 -1.67 7.80 -25.92 -0.20 -1.87 16 26 C -0.11 -1.41 7.14 -25.82 -0.18 -1.60 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.04 0.88 4.56 -51.93 -0.24 0.64 16 29 H 0.05 1.17 7.80 -51.93 -0.41 0.76 16 30 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.39 7.03 8.29 -40.82 -0.34 6.69 16 34 H 0.14 1.19 5.68 -52.49 -0.30 0.89 16 35 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.14 2.06 6.69 -52.49 -0.35 1.71 16 38 H 0.08 1.00 7.72 -51.93 -0.40 0.60 16 39 H 0.09 0.82 5.81 -51.93 -0.30 0.52 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 43 H 0.08 1.24 7.41 -51.93 -0.38 0.85 16 LS Contribution 345.62 15.07 5.21 5.21 Total: -1.00 -28.73 345.62 -8.75 -37.49 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -5.92 Total: 9.56 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -3.49 Total: -16.03 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.36 Total: -38.00 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.07 Total: -11.76 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.73 -8.75 -37.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.558 kcal (2) G-P(sol) polarization free energy of solvation -28.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds