Wall clock time and date at job start Tue Mar 31 2020 08:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47211 * 2 1 4 4 H 1.09001 * 109.47448 * 304.99930 * 3 2 1 5 5 C 1.50697 * 109.47489 * 184.99999 * 3 2 1 6 6 H 1.08003 * 120.00174 * 240.00158 * 5 3 2 7 7 C 1.37877 * 120.00093 * 59.99594 * 5 3 2 8 8 N 1.31514 * 119.99979 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00030 * 180.02562 * 7 5 3 10 10 H 1.48489 * 109.47347 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46983 * 120.00534 * 9 7 5 12 12 H 1.48506 * 109.46995 * 240.00130 * 9 7 5 13 13 N 1.46502 * 109.47306 * 65.00006 * 3 2 1 14 14 C 1.34777 * 119.99737 * 275.00181 * 13 3 2 15 15 O 1.21275 * 120.00115 * 4.24952 * 14 13 3 16 16 C 1.50703 * 119.99672 * 184.24815 * 14 13 3 17 17 C 1.50696 * 112.85128 * 283.78316 * 16 14 13 18 18 C 1.38246 * 119.97397 * 135.53642 * 17 16 14 19 19 C 1.38203 * 120.02526 * 179.76758 * 18 17 16 20 20 C 1.38465 * 119.97021 * 0.50919 * 19 18 17 21 21 F 1.35107 * 120.02214 * 179.76765 * 20 19 18 22 22 C 1.38457 * 119.95166 * 359.74235 * 20 19 18 23 23 C 1.38195 * 119.97319 * 0.02562 * 22 20 19 24 24 C 1.53777 * 113.61684 * 54.98240 * 16 14 13 25 25 C 1.53780 * 87.08462 * 89.11303 * 24 16 14 26 26 C 1.53784 * 87.17247 * 25.38996 * 25 24 16 27 27 H 1.09002 * 109.47048 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47384 * 299.99977 * 1 2 3 29 29 H 1.08997 * 109.47193 * 59.99962 * 1 2 3 30 30 H 1.08997 * 109.47133 * 239.99954 * 2 1 3 31 31 H 1.08997 * 109.47193 * 120.00038 * 2 1 3 32 32 H 0.96994 * 120.00413 * 179.97438 * 8 7 5 33 33 H 0.96997 * 120.00517 * 94.99807 * 13 3 2 34 34 H 1.07992 * 119.98793 * 0.02562 * 18 17 16 35 35 H 1.07993 * 120.01564 * 180.25260 * 19 18 17 36 36 H 1.07993 * 120.01172 * 180.02562 * 22 20 19 37 37 H 1.08000 * 119.98496 * 180.02562 * 23 22 20 38 38 H 1.09007 * 113.61381 * 334.56624 * 24 16 14 39 39 H 1.08998 * 113.69648 * 203.67693 * 24 16 14 40 40 H 1.08995 * 113.61698 * 139.98010 * 25 24 16 41 41 H 1.08998 * 113.61517 * 270.80403 * 25 24 16 42 42 H 1.09002 * 113.61108 * 89.15264 * 26 25 24 43 43 H 1.08990 * 113.61880 * 220.05801 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3373 -2.1732 9 14 6.0050 0.8801 -1.3810 10 1 6.5988 1.5442 -0.1931 11 1 6.4962 -0.5190 -1.4626 12 1 6.3999 1.6157 -2.6091 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3677 2.5657 0.4633 16 6 0.0716 3.4208 2.6186 17 6 -0.2479 2.5136 3.7787 18 6 0.2652 2.7890 5.0325 19 6 -0.0311 1.9603 6.0982 20 6 -0.8335 0.8482 5.9074 21 9 -1.1199 0.0348 6.9475 22 6 -1.3426 0.5705 4.6501 23 6 -1.0489 1.4032 3.5870 24 6 1.0619 4.5437 2.9693 25 6 0.1999 5.4699 2.0953 26 6 -0.9771 4.5241 2.3874 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8292 -0.0605 -2.9502 33 1 2.2718 2.1231 1.9978 34 1 0.8943 3.6542 5.1802 35 1 0.3665 2.1779 7.0784 36 1 -1.9689 -0.2964 4.5003 37 1 -1.4462 1.1870 2.6063 38 1 2.0649 4.3803 2.5750 39 1 1.0612 4.8145 4.0251 40 1 0.0712 6.4687 2.5122 41 1 0.4988 5.4840 1.0472 42 1 -1.5375 4.7886 3.2841 43 1 -1.6178 4.3449 1.5241 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613037895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:39 Heat of formation + Delta-G solvation = -59.249597 kcal Electronic energy + Delta-G solvation = -25767.314364 eV Core-core repulsion = 22112.591224 eV Total energy + Delta-G solvation = -3654.723140 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.88465 -42.02478 -39.73604 -38.34675 -36.75510 -34.27328 -32.79365 -32.16556 -31.78572 -29.07404 -26.95913 -26.62362 -25.02619 -23.97958 -23.08095 -22.46533 -21.33888 -20.20131 -18.82413 -18.54555 -17.69079 -17.29622 -17.17958 -16.79106 -16.57995 -16.27092 -15.94395 -15.60074 -15.21399 -14.67039 -14.61039 -14.43574 -14.29771 -13.84335 -13.70747 -13.55493 -13.44023 -13.19825 -13.00366 -12.85963 -12.70798 -12.67463 -12.18563 -12.10508 -11.98507 -11.77877 -11.58280 -11.37501 -11.25930 -11.04403 -10.60370 -10.49153 -10.07190 -9.60668 -9.49741 -8.16078 -6.33158 0.10624 0.26844 1.43550 1.45045 1.56455 1.83051 2.34743 2.52517 2.65071 3.13652 3.27081 3.51194 3.65325 3.68482 3.81997 3.89952 3.96823 4.04367 4.27796 4.40483 4.48042 4.53893 4.57435 4.75874 4.77369 4.84328 4.95779 5.01525 5.06314 5.07518 5.13102 5.15904 5.16422 5.25600 5.29103 5.44199 5.48075 5.55062 5.56758 5.63863 5.79357 5.90749 5.93304 6.17060 6.75232 7.01197 7.34094 7.59212 8.89447 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.014539 B = 0.004484 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.352149 B = 6242.867960 C = 6770.180611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.281 3.719 4 H -0.003 1.003 5 C -0.545 4.545 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.260 1.260 11 H -0.281 1.281 12 H -0.284 1.284 13 N -0.699 5.699 14 C 0.528 3.472 15 O -0.581 6.581 16 C -0.071 4.071 17 C -0.073 4.073 18 C -0.078 4.078 19 C -0.143 4.143 20 C 0.080 3.920 21 F -0.147 7.147 22 C -0.155 4.155 23 C -0.096 4.096 24 C -0.120 4.120 25 C -0.139 4.139 26 C -0.109 4.109 27 H 0.040 0.960 28 H 0.050 0.950 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.400 0.600 34 H 0.171 0.829 35 H 0.164 0.836 36 H 0.140 0.860 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.133 0.867 40 H 0.102 0.898 41 H 0.054 0.946 42 H 0.114 0.886 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.466 7.337 17.589 19.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.178 3.822 4 H 0.015 0.985 5 C -0.583 4.583 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.183 1.183 11 H -0.207 1.207 12 H -0.210 1.210 13 N -0.347 5.347 14 C 0.314 3.686 15 O -0.462 6.462 16 C -0.075 4.075 17 C -0.073 4.073 18 C -0.095 4.095 19 C -0.161 4.161 20 C 0.061 3.939 21 F -0.126 7.126 22 C -0.174 4.174 23 C -0.114 4.114 24 C -0.157 4.157 25 C -0.176 4.176 26 C -0.146 4.146 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.234 0.766 34 H 0.188 0.812 35 H 0.182 0.818 36 H 0.157 0.843 37 H 0.129 0.871 38 H 0.089 0.911 39 H 0.151 0.849 40 H 0.120 0.880 41 H 0.072 0.928 42 H 0.132 0.868 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.003 7.140 16.788 19.205 hybrid contribution 0.801 -0.816 -0.589 1.286 sum -5.201 6.324 16.199 18.151 Atomic orbital electron populations 1.21735 0.96978 0.98829 1.00595 1.21768 0.93785 0.99397 1.00943 1.18335 0.93614 0.88997 0.81250 0.98463 1.21592 0.91398 1.38746 1.06567 0.91076 1.25746 1.03166 0.94392 0.95060 1.70054 1.36962 1.38485 1.09885 0.85355 0.79324 0.77756 0.78263 1.18330 1.20665 1.20984 1.46200 1.15565 1.55716 1.17221 1.20252 0.81669 0.78661 0.88006 1.90647 1.50533 1.62040 1.43002 1.20953 1.01769 0.93991 0.90753 1.19451 0.98245 0.95247 0.94385 1.21266 0.98266 1.00148 0.89842 1.21422 0.99034 0.93774 1.01876 1.17921 1.00401 0.91562 0.84048 1.91478 1.92275 1.72021 1.56828 1.21188 1.02857 1.01786 0.91575 1.20922 0.97755 0.94395 0.98371 1.23222 0.97142 0.92563 1.02790 1.22779 0.95990 0.99473 0.99381 1.22940 0.96021 0.92921 1.02742 0.94114 0.93152 0.95566 0.91165 0.94570 0.92670 0.76588 0.81165 0.81827 0.84255 0.87109 0.91083 0.84946 0.87975 0.92763 0.86794 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.47 71.98 0.61 -5.07 16 2 C -0.12 -5.98 5.45 30.59 0.17 -5.81 16 3 C 0.28 14.32 2.24 44.24 0.10 14.42 16 4 H 0.00 -0.15 7.64 -2.39 -0.02 -0.17 16 5 C -0.54 -28.51 8.73 25.60 0.22 -28.29 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.88 5.29 84.65 0.45 1.32 16 8 N -0.92 -52.26 11.29 21.45 0.24 -52.02 16 9 Si 0.97 41.78 29.54 68.60 2.03 43.80 16 10 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 13 N -0.70 -28.45 4.80 -446.11 -2.14 -30.59 16 14 C 0.53 20.11 4.31 87.66 0.38 20.48 16 15 O -0.58 -26.89 12.93 -3.02 -0.04 -26.93 16 16 C -0.07 -1.91 1.04 -53.09 -0.06 -1.96 16 17 C -0.07 -1.75 5.08 -19.86 -0.10 -1.85 16 18 C -0.08 -1.36 9.23 22.26 0.21 -1.16 16 19 C -0.14 -2.52 10.03 22.32 0.22 -2.29 16 20 C 0.08 1.79 7.30 22.38 0.16 1.95 16 21 F -0.15 -3.44 17.27 44.97 0.78 -2.67 16 22 C -0.16 -3.81 10.03 22.31 0.22 -3.58 16 23 C -0.10 -2.64 9.27 22.26 0.21 -2.43 16 24 C -0.12 -2.40 6.69 31.12 0.21 -2.20 16 25 C -0.14 -3.04 7.80 31.12 0.24 -2.79 16 26 C -0.11 -2.61 7.14 31.18 0.22 -2.39 16 27 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.05 2.20 4.56 -2.38 -0.01 2.19 16 29 H 0.03 1.28 7.80 -2.39 -0.02 1.26 16 30 H 0.07 3.92 5.95 -2.39 -0.01 3.91 16 31 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 33 H 0.40 14.24 8.29 -92.71 -0.77 13.48 16 34 H 0.17 1.83 5.68 -2.91 -0.02 1.81 16 35 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 37 H 0.11 3.54 6.69 -2.91 -0.02 3.52 16 38 H 0.07 1.59 7.72 -2.38 -0.02 1.57 16 39 H 0.13 1.58 5.81 -2.39 -0.01 1.57 16 40 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.11 2.07 8.10 -2.39 -0.02 2.05 16 43 H 0.06 1.70 7.41 -2.39 -0.02 1.68 16 Total: -1.00 -66.02 345.62 4.60 -61.42 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.27 Total: 28.63 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: 3.46 Total: -21.65 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -1.90 Total: -82.61 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.04 Total: -26.93 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.78 Total: -2.67 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Total: -66.02 4.60 -61.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.173 kcal (2) G-P(sol) polarization free energy of solvation -66.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds