Wall clock time and date at job start Tue Mar 31 2020 08:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47071 * 2 1 4 4 C 1.53003 * 109.47187 * 120.00125 * 2 1 3 5 5 N 1.46504 * 109.46930 * 64.99910 * 4 2 1 6 6 C 1.46496 * 120.00183 * 90.00494 * 5 4 2 7 7 C 1.50691 * 109.47464 * 89.99536 * 6 5 4 8 8 H 1.08004 * 120.00042 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00158 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99794 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99990 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47382 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.46773 * 119.99990 * 11 9 7 14 14 H 1.48504 * 109.46947 * 239.99854 * 11 9 7 15 15 C 1.34776 * 119.99525 * 270.27350 * 5 4 2 16 16 O 1.21712 * 119.99454 * 179.72927 * 15 5 4 17 17 C 1.46332 * 120.00589 * 359.72781 * 15 5 4 18 18 C 1.34901 * 120.00319 * 186.37524 * 17 15 5 19 19 C 1.47080 * 119.99737 * 10.07645 * 18 17 15 20 20 C 1.39894 * 120.19054 * 48.55246 * 19 18 17 21 21 C 1.37814 * 119.85354 * 179.71584 * 20 19 18 22 22 C 1.38489 * 120.23491 * 0.55935 * 21 20 19 23 23 C 1.38264 * 120.39248 * 359.71806 * 22 21 20 24 24 C 1.38237 * 120.13818 * 359.97438 * 23 22 21 25 25 F 1.35100 * 120.12088 * 179.97438 * 24 23 22 26 26 H 1.08998 * 109.47191 * 299.99756 * 1 2 3 27 27 H 1.08996 * 109.46984 * 59.99813 * 1 2 3 28 28 H 1.08997 * 109.47519 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46874 * 239.99802 * 2 1 3 30 30 H 1.09006 * 109.47056 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47369 * 299.99951 * 3 2 1 32 32 H 1.08997 * 109.47433 * 60.00145 * 3 2 1 33 33 H 1.09005 * 109.47035 * 305.00150 * 4 2 1 34 34 H 1.08995 * 109.47279 * 184.99907 * 4 2 1 35 35 H 1.09000 * 109.46772 * 209.99725 * 6 5 4 36 36 H 1.09008 * 109.46512 * 329.99218 * 6 5 4 37 37 H 0.97000 * 120.00068 * 180.02562 * 10 9 7 38 38 H 1.08002 * 120.00056 * 6.37522 * 17 15 5 39 39 H 1.08000 * 119.99829 * 190.07578 * 18 17 15 40 40 H 1.07998 * 120.07594 * 359.97438 * 20 19 18 41 41 H 1.07999 * 119.88528 * 180.25098 * 21 20 19 42 42 H 1.08008 * 119.80582 * 179.73816 * 22 21 20 43 43 H 1.07993 * 119.93120 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 2.5427 -3.1114 0.5612 7 6 3.4831 -3.6733 1.5959 8 1 3.4240 -3.3350 2.6199 9 6 4.4199 -4.6185 1.2352 10 7 4.4930 -5.0293 -0.0120 11 14 5.5853 -5.3156 2.5180 12 1 5.3004 -4.6932 3.8358 13 1 5.3953 -6.7853 2.6127 14 1 6.9869 -5.0219 2.1251 15 6 0.4743 -2.5303 1.7106 16 8 0.1501 -3.7023 1.6574 17 6 -0.4150 -1.5530 2.3393 18 6 -1.5319 -1.9667 2.9728 19 6 -1.7455 -3.3997 3.2262 20 6 -0.7261 -4.1739 3.7906 21 6 -0.9358 -5.5147 4.0306 22 6 -2.1476 -6.1003 3.7043 23 6 -3.1599 -5.3458 3.1407 24 6 -2.9689 -3.9982 2.8991 25 9 -3.9582 -3.2614 2.3479 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6053 -0.2618 2.1370 34 1 3.1263 -0.6444 1.2952 35 1 1.9496 -3.9192 0.1325 36 1 3.1179 -2.6251 -0.2268 37 1 5.1518 -5.6946 -0.2657 38 1 -0.1772 -0.5003 2.2962 39 1 -2.2691 -1.2457 3.2938 40 1 0.2216 -3.7210 4.0417 41 1 -0.1506 -6.1119 4.4700 42 1 -2.3030 -7.1527 3.8914 43 1 -4.1021 -5.8100 2.8896 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701318989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:01 Heat of formation + Delta-G solvation = -35.344483 kcal Electronic energy + Delta-G solvation = -25576.667031 eV Core-core repulsion = 21922.980495 eV Total energy + Delta-G solvation = -3653.686536 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.63894 -39.67971 -38.31202 -36.29297 -34.13110 -33.19395 -32.25845 -30.25290 -29.60409 -27.55497 -27.00987 -25.63120 -24.15100 -22.69697 -22.11778 -20.60828 -20.17070 -17.95894 -17.43881 -16.85557 -16.43419 -15.94449 -15.59329 -15.34916 -14.97459 -14.63122 -14.41835 -14.12978 -13.92819 -13.58664 -13.28926 -13.08333 -12.77479 -12.70765 -12.33485 -12.20872 -12.11669 -11.74685 -11.66016 -11.35434 -11.30534 -10.98063 -10.91331 -10.83059 -10.69358 -10.58190 -10.37472 -10.15019 -9.63686 -9.57515 -9.01972 -8.44977 -8.37582 -7.87670 -7.58023 -6.05234 -4.09935 1.00479 1.59406 2.05611 3.27534 3.35245 3.38480 3.95815 3.98620 4.00490 4.43813 4.52717 4.82488 5.01489 5.03831 5.06960 5.14268 5.26886 5.29067 5.40807 5.47582 5.55242 5.67407 5.69365 5.72641 5.85329 5.95182 6.07032 6.10333 6.18845 6.22113 6.26115 6.30362 6.41363 6.46883 6.49414 6.56929 6.67178 6.81138 7.11477 7.21761 7.45991 7.56400 7.91503 8.23012 8.44680 8.90071 9.12333 9.55216 11.02713 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.010071 B = 0.006092 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.536644 B = 4594.858339 C = 6831.885640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.142 4.142 4 C 0.115 3.885 5 N -0.588 5.588 6 C 0.247 3.753 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.895 3.105 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.528 3.472 16 O -0.529 6.529 17 C -0.189 4.189 18 C -0.057 4.057 19 C -0.084 4.084 20 C -0.010 4.010 21 C -0.135 4.135 22 C -0.087 4.087 23 C -0.169 4.169 24 C 0.103 3.897 25 F -0.144 7.144 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.030 0.970 37 H 0.262 0.738 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.123 8.489 5.752 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.138 4.138 3 C -0.200 4.200 4 C -0.010 4.010 5 N -0.318 5.318 6 C 0.128 3.872 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.723 3.277 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.210 1.210 15 C 0.316 3.684 16 O -0.408 6.408 17 C -0.210 4.210 18 C -0.077 4.077 19 C -0.085 4.085 20 C -0.028 4.028 21 C -0.153 4.153 22 C -0.105 4.105 23 C -0.188 4.188 24 C 0.084 3.916 25 F -0.123 7.123 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.153 0.847 39 H 0.149 0.851 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.178 7.761 5.555 14.698 hybrid contribution 0.678 -0.193 0.287 0.762 sum -10.500 7.568 5.843 14.200 Atomic orbital electron populations 1.22055 0.95558 1.01958 1.01008 1.21587 0.95988 0.96091 1.00123 1.21757 1.01185 0.95653 1.01389 1.21559 1.01080 0.81885 0.96427 1.48180 1.18427 1.08237 1.56947 1.19257 0.87962 0.87063 0.92966 1.21439 1.16144 1.23009 0.95536 0.92480 1.24927 0.97491 0.96256 0.95391 1.69942 1.35639 1.31207 1.16529 0.86484 0.80510 0.79016 0.81659 1.19811 1.20909 1.20999 1.18216 0.81748 0.88226 0.80184 1.90850 1.73869 1.18096 1.57986 1.23638 0.96498 1.00539 1.00312 1.22086 0.96228 0.93561 0.95823 1.18828 0.92856 0.94237 1.02574 1.21015 0.95868 0.93432 0.92535 1.21026 0.97294 0.95053 1.01936 1.20961 0.92869 0.99372 0.97302 1.20846 1.01047 0.92265 1.04630 1.17736 0.85224 0.89662 0.99014 1.91437 1.60293 1.77215 1.83359 0.92726 0.93112 0.92244 0.90564 0.92455 0.92853 0.92859 0.91579 0.89941 0.93866 0.95192 0.92807 0.84689 0.85144 0.85691 0.85662 0.85693 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 7.61 37.16 0.28 -1.64 16 2 C -0.12 -1.62 3.13 -90.62 -0.28 -1.90 16 3 C -0.14 -1.53 9.19 37.16 0.34 -1.19 16 4 C 0.11 1.83 4.94 -4.04 -0.02 1.81 16 5 N -0.59 -12.11 2.35 -176.74 -0.41 -12.53 16 6 C 0.25 6.33 5.16 -5.20 -0.03 6.30 16 7 C -0.52 -14.45 9.39 -34.44 -0.32 -14.77 16 8 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 11 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.53 10.71 5.61 -13.01 -0.07 10.64 16 16 O -0.53 -12.65 11.93 5.18 0.06 -12.59 16 17 C -0.19 -2.93 7.12 -37.51 -0.27 -3.20 16 18 C -0.06 -0.84 9.44 -37.18 -0.35 -1.19 16 19 C -0.08 -1.41 4.36 -105.00 -0.46 -1.86 16 20 C -0.01 -0.18 6.72 -39.12 -0.26 -0.44 16 21 C -0.13 -2.15 10.03 -39.64 -0.40 -2.54 16 22 C -0.09 -1.23 10.04 -39.48 -0.40 -1.63 16 23 C -0.17 -2.46 10.01 -39.57 -0.40 -2.85 16 24 C 0.10 1.66 7.30 -38.89 -0.28 1.38 16 25 F -0.14 -2.28 16.83 2.25 0.04 -2.24 16 26 H 0.05 0.60 6.39 -51.93 -0.33 0.27 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.93 5.84 -51.93 -0.30 0.63 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.89 6.19 -51.93 -0.32 0.57 16 34 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 35 H 0.04 1.27 7.41 -51.93 -0.38 0.88 16 36 H 0.03 0.79 8.07 -51.92 -0.42 0.37 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.14 1.69 4.16 -52.49 -0.22 1.47 16 39 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.13 2.27 7.44 -52.49 -0.39 1.88 16 41 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 43 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 353.40 15.07 5.33 5.33 Total: -1.00 -31.93 353.40 -8.43 -40.36 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.14 Total: 2.26 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -3.01 Total: -11.47 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.32 Total: -38.14 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.06 Total: -12.59 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.93 -8.43 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701318989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.013 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds