Wall clock time and date at job start Tue Mar 31 2020 08:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47071 * 2 1 4 4 C 1.53003 * 109.47187 * 120.00125 * 2 1 3 5 5 N 1.46504 * 109.46930 * 64.99910 * 4 2 1 6 6 C 1.46496 * 120.00183 * 90.00494 * 5 4 2 7 7 C 1.50691 * 109.47464 * 89.99536 * 6 5 4 8 8 H 1.08004 * 120.00042 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00158 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99794 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99990 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47382 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.46773 * 119.99990 * 11 9 7 14 14 H 1.48504 * 109.46947 * 239.99854 * 11 9 7 15 15 C 1.34776 * 119.99525 * 270.27350 * 5 4 2 16 16 O 1.21712 * 119.99454 * 179.72927 * 15 5 4 17 17 C 1.46332 * 120.00589 * 359.72781 * 15 5 4 18 18 C 1.34901 * 120.00319 * 186.37524 * 17 15 5 19 19 C 1.47080 * 119.99737 * 10.07645 * 18 17 15 20 20 C 1.39894 * 120.19054 * 48.55246 * 19 18 17 21 21 C 1.37814 * 119.85354 * 179.71584 * 20 19 18 22 22 C 1.38489 * 120.23491 * 0.55935 * 21 20 19 23 23 C 1.38264 * 120.39248 * 359.71806 * 22 21 20 24 24 C 1.38237 * 120.13818 * 359.97438 * 23 22 21 25 25 F 1.35100 * 120.12088 * 179.97438 * 24 23 22 26 26 H 1.08998 * 109.47191 * 299.99756 * 1 2 3 27 27 H 1.08996 * 109.46984 * 59.99813 * 1 2 3 28 28 H 1.08997 * 109.47519 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46874 * 239.99802 * 2 1 3 30 30 H 1.09006 * 109.47056 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47369 * 299.99951 * 3 2 1 32 32 H 1.08997 * 109.47433 * 60.00145 * 3 2 1 33 33 H 1.09005 * 109.47035 * 305.00150 * 4 2 1 34 34 H 1.08995 * 109.47279 * 184.99907 * 4 2 1 35 35 H 1.09000 * 109.46772 * 209.99725 * 6 5 4 36 36 H 1.09008 * 109.46512 * 329.99218 * 6 5 4 37 37 H 0.97000 * 120.00068 * 180.02562 * 10 9 7 38 38 H 1.08002 * 120.00056 * 6.37522 * 17 15 5 39 39 H 1.08000 * 119.99829 * 190.07578 * 18 17 15 40 40 H 1.07998 * 120.07594 * 359.97438 * 20 19 18 41 41 H 1.07999 * 119.88528 * 180.25098 * 21 20 19 42 42 H 1.08008 * 119.80582 * 179.73816 * 22 21 20 43 43 H 1.07993 * 119.93120 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 2.5427 -3.1114 0.5612 7 6 3.4831 -3.6733 1.5959 8 1 3.4240 -3.3350 2.6199 9 6 4.4199 -4.6185 1.2352 10 7 4.4930 -5.0293 -0.0120 11 14 5.5853 -5.3156 2.5180 12 1 5.3004 -4.6932 3.8358 13 1 5.3953 -6.7853 2.6127 14 1 6.9869 -5.0219 2.1251 15 6 0.4743 -2.5303 1.7106 16 8 0.1501 -3.7023 1.6574 17 6 -0.4150 -1.5530 2.3393 18 6 -1.5319 -1.9667 2.9728 19 6 -1.7455 -3.3997 3.2262 20 6 -0.7261 -4.1739 3.7906 21 6 -0.9358 -5.5147 4.0306 22 6 -2.1476 -6.1003 3.7043 23 6 -3.1599 -5.3458 3.1407 24 6 -2.9689 -3.9982 2.8991 25 9 -3.9582 -3.2614 2.3479 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6053 -0.2618 2.1370 34 1 3.1263 -0.6444 1.2952 35 1 1.9496 -3.9192 0.1325 36 1 3.1179 -2.6251 -0.2268 37 1 5.1518 -5.6946 -0.2657 38 1 -0.1772 -0.5003 2.2962 39 1 -2.2691 -1.2457 3.2938 40 1 0.2216 -3.7210 4.0417 41 1 -0.1506 -6.1119 4.4700 42 1 -2.3030 -7.1527 3.8914 43 1 -4.1021 -5.8100 2.8896 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701318989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:00 Heat of formation + Delta-G solvation = -52.270638 kcal Electronic energy + Delta-G solvation = -25577.401004 eV Core-core repulsion = 21922.980495 eV Total energy + Delta-G solvation = -3654.420510 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.86239 -41.15381 -39.57790 -37.66593 -35.71784 -34.69988 -34.04312 -31.46976 -30.93844 -29.39615 -28.02095 -26.94371 -25.83012 -24.23542 -23.38313 -22.04819 -21.33538 -19.35389 -18.79572 -18.55545 -18.14219 -17.22756 -17.11161 -16.58661 -16.53439 -16.16406 -15.77974 -15.52668 -15.17963 -14.84010 -14.56299 -14.42544 -14.31335 -13.98533 -13.86835 -13.68702 -13.29542 -13.19469 -12.94730 -12.73705 -12.72850 -12.57985 -12.51177 -12.30242 -12.09295 -12.01078 -11.78892 -11.59465 -11.51137 -10.84906 -10.65029 -10.51901 -9.65516 -9.28142 -9.15552 -8.21395 -6.36385 -0.22617 0.35868 0.83231 1.35622 1.37259 1.49339 2.30810 2.47995 2.54110 2.74403 3.07826 3.32274 3.65454 3.78607 3.88393 3.95418 4.05188 4.11657 4.26055 4.37400 4.40683 4.51742 4.53272 4.72449 4.82398 4.90645 4.93745 4.96705 5.02102 5.08970 5.09203 5.12648 5.20370 5.26271 5.29398 5.31689 5.43273 5.48761 5.51767 5.60338 5.61649 5.89558 6.02595 6.07630 6.72217 6.85656 7.29911 7.55330 8.85497 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.010071 B = 0.006092 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.536644 B = 4594.858339 C = 6831.885640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C -0.135 4.135 4 C 0.110 3.890 5 N -0.595 5.595 6 C 0.267 3.733 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.008 3.992 10 N -0.930 5.930 11 Si 0.965 3.035 12 H -0.265 1.265 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.521 3.479 16 O -0.576 6.576 17 C -0.194 4.194 18 C -0.042 4.042 19 C -0.103 4.103 20 C -0.032 4.032 21 C -0.151 4.151 22 C -0.084 4.084 23 C -0.169 4.169 24 C 0.088 3.912 25 F -0.143 7.143 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.026 0.974 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.070 0.930 35 H -0.006 1.006 36 H 0.014 0.986 37 H 0.266 0.734 38 H 0.171 0.829 39 H 0.172 0.828 40 H 0.106 0.894 41 H 0.132 0.868 42 H 0.158 0.842 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.215 10.049 7.368 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 C -0.192 4.192 4 C -0.013 4.013 5 N -0.324 5.324 6 C 0.145 3.855 7 C -0.572 4.572 8 H 0.072 0.928 9 C -0.191 4.191 10 N -0.570 5.570 11 Si 0.790 3.210 12 H -0.189 1.189 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.312 3.688 16 O -0.458 6.458 17 C -0.214 4.214 18 C -0.062 4.062 19 C -0.104 4.104 20 C -0.050 4.050 21 C -0.169 4.169 22 C -0.102 4.102 23 C -0.187 4.187 24 C 0.069 3.931 25 F -0.121 7.121 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.013 0.987 36 H 0.032 0.968 37 H 0.075 0.925 38 H 0.188 0.812 39 H 0.190 0.810 40 H 0.124 0.876 41 H 0.150 0.850 42 H 0.176 0.824 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.276 9.374 7.178 17.032 hybrid contribution 0.951 -0.738 -0.242 1.228 sum -11.324 8.636 6.936 15.841 Atomic orbital electron populations 1.22017 0.94471 1.00464 1.03120 1.21521 0.96845 0.97526 0.97444 1.21707 1.01008 0.93336 1.03175 1.21851 1.00813 0.79504 0.99087 1.48135 1.18176 1.09385 1.56743 1.18625 0.87509 0.86857 0.92480 1.21681 1.16589 1.23363 0.95592 0.92781 1.25844 0.99246 0.96505 0.97500 1.70071 1.36557 1.31840 1.18577 0.85399 0.78500 0.77991 0.79129 1.18872 1.20757 1.19680 1.19012 0.81729 0.88628 0.79456 1.90820 1.74858 1.20413 1.59699 1.23522 0.95839 1.00761 1.01256 1.22540 0.96271 0.93368 0.93972 1.19089 0.92995 0.95550 1.02793 1.20983 0.95522 0.94399 0.94102 1.21289 0.98527 0.94825 1.02270 1.21328 0.91842 1.00937 0.96104 1.21242 1.02223 0.91762 1.03516 1.17938 0.85189 0.90484 0.99470 1.91434 1.60072 1.77271 1.83373 0.89865 0.91730 0.95441 0.93778 0.92784 0.91611 0.90488 0.88212 0.91171 0.98743 0.96779 0.92533 0.81161 0.81044 0.87626 0.85029 0.82400 0.82662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 7.61 71.98 0.55 -2.89 16 2 C -0.11 -3.03 3.13 -10.79 -0.03 -3.06 16 3 C -0.13 -2.56 9.19 71.98 0.66 -1.90 16 4 C 0.11 3.46 4.94 86.38 0.43 3.89 16 5 N -0.60 -25.43 2.35 -831.28 -1.95 -27.39 16 6 C 0.27 14.58 5.16 85.63 0.44 15.03 16 7 C -0.53 -30.68 9.39 25.60 0.24 -30.44 16 8 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 9 C 0.01 0.44 5.46 84.66 0.46 0.91 16 10 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 11 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 12 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 15 C 0.52 21.68 5.61 86.35 0.48 22.17 16 16 O -0.58 -28.93 11.93 -4.39 -0.05 -28.98 16 17 C -0.19 -5.71 7.12 23.61 0.17 -5.54 16 18 C -0.04 -1.16 9.44 23.82 0.22 -0.94 16 19 C -0.10 -3.42 4.36 -20.11 -0.09 -3.50 16 20 C -0.03 -1.13 6.72 22.57 0.15 -0.98 16 21 C -0.15 -4.85 10.03 22.23 0.22 -4.63 16 22 C -0.08 -2.28 10.04 22.34 0.22 -2.06 16 23 C -0.17 -4.63 10.01 22.28 0.22 -4.41 16 24 C 0.09 2.76 7.30 22.72 0.17 2.93 16 25 F -0.14 -4.26 16.83 44.97 0.76 -3.51 16 26 H 0.08 1.50 6.39 -2.39 -0.02 1.48 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.03 0.83 5.84 -2.39 -0.01 0.82 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.10 2.45 6.19 -2.38 -0.01 2.43 16 34 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 35 H -0.01 -0.35 7.41 -2.39 -0.02 -0.37 16 36 H 0.01 0.80 8.07 -2.38 -0.02 0.78 16 37 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 38 H 0.17 3.66 4.16 -2.91 -0.01 3.64 16 39 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 40 H 0.11 4.05 7.44 -2.91 -0.02 4.03 16 41 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 42 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 43 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -74.09 353.40 6.59 -67.50 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 1.00 Total: 17.48 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 4.52 Total: -15.44 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -1.67 Total: -83.91 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.05 Total: -28.98 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.76 Total: -3.51 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -74.09 6.59 -67.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701318989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.229 kcal (2) G-P(sol) polarization free energy of solvation -74.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds