Wall clock time and date at job start Tue Mar 31 2020 08:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47023 * 2 1 4 4 C 1.52996 * 109.46929 * 119.99919 * 2 1 3 5 5 N 1.46503 * 109.47391 * 65.00273 * 4 2 1 6 6 C 1.46507 * 119.99481 * 270.00153 * 5 4 2 7 7 C 1.50700 * 109.46799 * 269.99293 * 6 5 4 8 8 H 1.07999 * 120.00558 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99630 * 180.02562 * 7 6 5 10 10 N 1.31506 * 120.00418 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99619 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47174 * 90.00194 * 11 9 7 13 13 H 1.48502 * 109.46836 * 209.99921 * 11 9 7 14 14 H 1.48497 * 109.47167 * 329.99987 * 11 9 7 15 15 C 1.34766 * 120.00088 * 89.99644 * 5 4 2 16 16 O 1.21697 * 120.00082 * 180.02562 * 15 5 4 17 17 C 1.46428 * 120.00228 * 0.27839 * 15 5 4 18 18 C 1.34811 * 120.00196 * 172.90096 * 17 15 5 19 19 C 1.47210 * 119.99674 * 349.03457 * 18 17 15 20 20 C 1.39861 * 120.15483 * 136.37681 * 19 18 17 21 21 C 1.37879 * 119.87859 * 180.02562 * 20 19 18 22 22 C 1.38384 * 120.19919 * 359.97438 * 21 20 19 23 23 C 1.38600 * 120.31813 * 0.02562 * 22 21 20 24 24 F 1.35103 * 119.93657 * 179.97438 * 23 22 21 25 25 C 1.38142 * 120.12043 * 359.71742 * 23 22 21 26 26 H 1.09006 * 109.47165 * 299.99912 * 1 2 3 27 27 H 1.09001 * 109.47371 * 60.00045 * 1 2 3 28 28 H 1.09002 * 109.47292 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47029 * 239.99979 * 2 1 3 30 30 H 1.09004 * 109.46679 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47297 * 299.99964 * 3 2 1 32 32 H 1.09006 * 109.47078 * 60.00035 * 3 2 1 33 33 H 1.09001 * 109.47332 * 304.99877 * 4 2 1 34 34 H 1.09000 * 109.47286 * 184.99757 * 4 2 1 35 35 H 1.08997 * 109.47606 * 29.99578 * 6 5 4 36 36 H 1.09001 * 109.46826 * 149.99987 * 6 5 4 37 37 H 0.97000 * 120.00586 * 179.97438 * 10 9 7 38 38 H 1.07995 * 119.99784 * 352.90022 * 17 15 5 39 39 H 1.07993 * 120.00039 * 169.04340 * 18 17 15 40 40 H 1.07996 * 120.06139 * 359.97438 * 20 19 18 41 41 H 1.08003 * 119.89878 * 180.02562 * 21 20 19 42 42 H 1.07996 * 119.84045 * 180.02562 * 22 21 20 43 43 H 1.07999 * 120.10095 * 180.27604 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.6524 -2.1329 1.1906 6 6 0.3744 -2.5659 1.7613 7 6 0.5715 -2.9408 3.2075 8 1 1.5506 -2.8638 3.6568 9 6 -0.4982 -3.3821 3.9572 10 7 -1.6904 -3.4763 3.4101 11 14 -0.2541 -3.8462 5.7501 12 1 -0.4677 -2.6504 6.6045 13 1 -1.2280 -4.9027 6.1250 14 1 1.1274 -4.3542 5.9462 15 6 2.4714 -3.0330 0.6117 16 8 2.1493 -4.2055 0.5625 17 6 3.7514 -2.6011 0.0466 18 6 4.6330 -3.5166 -0.4029 19 6 4.4244 -4.9444 -0.1114 20 6 4.6163 -5.9014 -1.1132 21 6 4.4188 -7.2371 -0.8340 22 6 4.0319 -7.6333 0.4342 23 6 3.8394 -6.6920 1.4331 24 9 3.4612 -7.0874 2.6683 25 6 4.0387 -5.3507 1.1693 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 3.1262 -0.6444 1.2952 35 1 -0.3485 -1.7531 1.6919 36 1 0.0041 -3.4297 1.2092 37 1 -2.4429 -3.7871 3.9373 38 1 3.9892 -1.5492 -0.0100 39 1 5.4922 -3.2025 -0.9768 40 1 4.9178 -5.5946 -2.1038 41 1 4.5673 -7.9764 -1.6072 42 1 3.8793 -8.6811 0.6466 43 1 3.8929 -4.6178 1.9491 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705966517.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:06 Heat of formation + Delta-G solvation = -36.284674 kcal Electronic energy + Delta-G solvation = -25507.860245 eV Core-core repulsion = 21854.132939 eV Total energy + Delta-G solvation = -3653.727306 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.36307 -39.66497 -38.31621 -36.37201 -33.88080 -33.20523 -32.29324 -30.21752 -29.62637 -27.74195 -26.83430 -25.51587 -24.19588 -22.64999 -22.10140 -20.62973 -20.07690 -18.18194 -17.14164 -16.55982 -16.24539 -15.92963 -15.81429 -15.28295 -15.08247 -14.51483 -14.42730 -14.09616 -13.75719 -13.74602 -13.19057 -12.91660 -12.70916 -12.65365 -12.25105 -12.10268 -12.07647 -11.87921 -11.54586 -11.43501 -11.32591 -10.99928 -10.90173 -10.77776 -10.67134 -10.48017 -10.24999 -10.11809 -9.72888 -9.56040 -9.05333 -8.39858 -8.30240 -7.87224 -7.55299 -6.01933 -4.06223 0.93618 1.61732 2.08672 3.31732 3.39144 3.44047 3.96010 3.96650 4.02304 4.47973 4.63074 4.88311 4.97654 5.06155 5.13928 5.18249 5.30643 5.32531 5.36274 5.40549 5.49550 5.70413 5.72245 5.82886 5.87852 6.01744 6.09872 6.15530 6.17173 6.21645 6.29585 6.32007 6.39415 6.52360 6.56594 6.61165 6.69768 6.77217 7.14709 7.24826 7.47033 7.57819 7.94504 8.26275 8.44694 8.92461 9.12213 9.58867 11.05846 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.009414 B = 0.006597 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.517848 B = 4243.543619 C = 6629.547572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.114 3.886 5 N -0.586 5.586 6 C 0.243 3.757 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.063 3.937 10 N -0.894 5.894 11 Si 0.894 3.106 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.523 3.477 16 O -0.528 6.528 17 C -0.190 4.190 18 C -0.053 4.053 19 C -0.035 4.035 20 C -0.118 4.118 21 C -0.110 4.110 22 C -0.150 4.150 23 C 0.089 3.911 24 F -0.142 7.142 25 C -0.062 4.062 26 H 0.056 0.944 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.040 0.960 36 H 0.042 0.958 37 H 0.263 0.737 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.075 3.398 -9.759 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.011 4.011 5 N -0.315 5.315 6 C 0.124 3.876 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.139 4.139 10 N -0.533 5.533 11 Si 0.721 3.279 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.312 3.688 16 O -0.407 6.407 17 C -0.211 4.211 18 C -0.073 4.073 19 C -0.035 4.035 20 C -0.136 4.136 21 C -0.128 4.128 22 C -0.169 4.169 23 C 0.070 3.930 24 F -0.120 7.120 25 C -0.081 4.081 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.638 2.724 -9.657 16.137 hybrid contribution -0.235 -0.123 1.266 1.293 sum 12.403 2.601 -8.392 15.200 Atomic orbital electron populations 1.21925 0.94631 1.03071 1.00938 1.21599 0.97136 0.95776 0.98868 1.21783 1.00481 0.96059 1.01789 1.21582 0.99077 0.82422 0.97979 1.48201 1.21830 1.06313 1.55202 1.19400 0.78644 0.96363 0.93222 1.21413 0.95004 1.44419 0.95452 0.92632 1.24897 0.95073 0.95376 0.98571 1.69920 0.99834 1.47044 1.36543 0.86560 0.78215 0.78183 0.84906 1.20682 1.21093 1.19816 1.18296 0.85019 0.86081 0.79419 1.90855 1.75063 1.16551 1.58264 1.23435 0.95316 1.00030 1.02332 1.22217 0.97902 0.91269 0.95891 1.18619 0.99113 0.92880 0.92870 1.21131 1.01499 0.92563 0.98414 1.20692 1.00489 0.95901 0.95713 1.21099 1.03261 0.99222 0.93314 1.17506 1.01772 0.93068 0.80634 1.91498 1.89026 1.91422 1.40071 1.21146 0.95452 0.93956 0.97565 0.92531 0.93658 0.91285 0.91491 0.92953 0.92845 0.92501 0.89953 0.91590 0.94222 0.94045 0.92777 0.85148 0.84870 0.85906 0.85657 0.85504 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.18 37.16 0.30 -1.95 16 2 C -0.11 -1.54 3.13 -90.62 -0.28 -1.82 16 3 C -0.14 -1.50 9.19 37.16 0.34 -1.16 16 4 C 0.11 1.80 4.57 -4.04 -0.02 1.78 16 5 N -0.59 -12.05 2.28 -176.70 -0.40 -12.45 16 6 C 0.24 6.22 4.23 -5.19 -0.02 6.20 16 7 C -0.52 -14.81 9.39 -34.44 -0.32 -15.14 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 11 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 15 C 0.52 10.61 6.65 -12.97 -0.09 10.52 16 16 O -0.53 -12.74 11.74 5.19 0.06 -12.68 16 17 C -0.19 -2.82 9.03 -37.50 -0.34 -3.16 16 18 C -0.05 -0.70 9.81 -37.15 -0.36 -1.07 16 19 C -0.03 -0.55 4.53 -105.07 -0.48 -1.02 16 20 C -0.12 -1.60 9.79 -39.11 -0.38 -1.98 16 21 C -0.11 -1.46 10.03 -39.66 -0.40 -1.86 16 22 C -0.15 -2.31 10.02 -39.39 -0.39 -2.71 16 23 C 0.09 1.68 7.29 -39.48 -0.29 1.39 16 24 F -0.14 -2.90 17.26 2.25 0.04 -2.86 16 25 C -0.06 -1.17 6.58 -39.04 -0.26 -1.42 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.26 5.89 -51.93 -0.31 0.95 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 34 H 0.07 0.88 6.18 -51.93 -0.32 0.55 16 35 H 0.04 1.02 5.98 -51.93 -0.31 0.71 16 36 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.13 1.52 6.34 -52.49 -0.33 1.18 16 39 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 40 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 42 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 43 H 0.13 2.64 7.03 -52.49 -0.37 2.27 16 LS Contribution 357.43 15.07 5.39 5.39 Total: -1.00 -33.11 357.43 -8.50 -41.61 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.22 Total: 1.39 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -3.08 Total: -11.69 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.33 Total: -38.44 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.06 Total: -12.68 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.04 Total: -2.86 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.11 -8.50 -41.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705966517.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.328 kcal (2) G-P(sol) polarization free energy of solvation -33.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds