Wall clock time and date at job start Tue Mar 31 2020 08:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47023 * 2 1 4 4 C 1.52996 * 109.46929 * 119.99919 * 2 1 3 5 5 N 1.46503 * 109.47391 * 65.00273 * 4 2 1 6 6 C 1.46507 * 119.99481 * 270.00153 * 5 4 2 7 7 C 1.50700 * 109.46799 * 269.99293 * 6 5 4 8 8 H 1.07999 * 120.00558 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99630 * 180.02562 * 7 6 5 10 10 N 1.31506 * 120.00418 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99619 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47174 * 90.00194 * 11 9 7 13 13 H 1.48502 * 109.46836 * 209.99921 * 11 9 7 14 14 H 1.48497 * 109.47167 * 329.99987 * 11 9 7 15 15 C 1.34766 * 120.00088 * 89.99644 * 5 4 2 16 16 O 1.21697 * 120.00082 * 180.02562 * 15 5 4 17 17 C 1.46428 * 120.00228 * 0.27839 * 15 5 4 18 18 C 1.34811 * 120.00196 * 172.90096 * 17 15 5 19 19 C 1.47210 * 119.99674 * 349.03457 * 18 17 15 20 20 C 1.39861 * 120.15483 * 136.37681 * 19 18 17 21 21 C 1.37879 * 119.87859 * 180.02562 * 20 19 18 22 22 C 1.38384 * 120.19919 * 359.97438 * 21 20 19 23 23 C 1.38600 * 120.31813 * 0.02562 * 22 21 20 24 24 F 1.35103 * 119.93657 * 179.97438 * 23 22 21 25 25 C 1.38142 * 120.12043 * 359.71742 * 23 22 21 26 26 H 1.09006 * 109.47165 * 299.99912 * 1 2 3 27 27 H 1.09001 * 109.47371 * 60.00045 * 1 2 3 28 28 H 1.09002 * 109.47292 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47029 * 239.99979 * 2 1 3 30 30 H 1.09004 * 109.46679 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47297 * 299.99964 * 3 2 1 32 32 H 1.09006 * 109.47078 * 60.00035 * 3 2 1 33 33 H 1.09001 * 109.47332 * 304.99877 * 4 2 1 34 34 H 1.09000 * 109.47286 * 184.99757 * 4 2 1 35 35 H 1.08997 * 109.47606 * 29.99578 * 6 5 4 36 36 H 1.09001 * 109.46826 * 149.99987 * 6 5 4 37 37 H 0.97000 * 120.00586 * 179.97438 * 10 9 7 38 38 H 1.07995 * 119.99784 * 352.90022 * 17 15 5 39 39 H 1.07993 * 120.00039 * 169.04340 * 18 17 15 40 40 H 1.07996 * 120.06139 * 359.97438 * 20 19 18 41 41 H 1.08003 * 119.89878 * 180.02562 * 21 20 19 42 42 H 1.07996 * 119.84045 * 180.02562 * 22 21 20 43 43 H 1.07999 * 120.10095 * 180.27604 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.6524 -2.1329 1.1906 6 6 0.3744 -2.5659 1.7613 7 6 0.5715 -2.9408 3.2075 8 1 1.5506 -2.8638 3.6568 9 6 -0.4982 -3.3821 3.9572 10 7 -1.6904 -3.4763 3.4101 11 14 -0.2541 -3.8462 5.7501 12 1 -0.4677 -2.6504 6.6045 13 1 -1.2280 -4.9027 6.1250 14 1 1.1274 -4.3542 5.9462 15 6 2.4714 -3.0330 0.6117 16 8 2.1493 -4.2055 0.5625 17 6 3.7514 -2.6011 0.0466 18 6 4.6330 -3.5166 -0.4029 19 6 4.4244 -4.9444 -0.1114 20 6 4.6163 -5.9014 -1.1132 21 6 4.4188 -7.2371 -0.8340 22 6 4.0319 -7.6333 0.4342 23 6 3.8394 -6.6920 1.4331 24 9 3.4612 -7.0874 2.6683 25 6 4.0387 -5.3507 1.1693 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 3.1262 -0.6444 1.2952 35 1 -0.3485 -1.7531 1.6919 36 1 0.0041 -3.4297 1.2092 37 1 -2.4429 -3.7871 3.9373 38 1 3.9892 -1.5492 -0.0100 39 1 5.4922 -3.2025 -0.9768 40 1 4.9178 -5.5946 -2.1038 41 1 4.5673 -7.9764 -1.6072 42 1 3.8793 -8.6811 0.6466 43 1 3.8929 -4.6178 1.9491 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705966517.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:06 Heat of formation + Delta-G solvation = -55.161237 kcal Electronic energy + Delta-G solvation = -25508.678794 eV Core-core repulsion = 21854.132939 eV Total energy + Delta-G solvation = -3654.545855 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.85485 -41.10498 -39.59792 -37.74186 -35.50100 -34.61733 -34.10560 -31.44939 -30.98043 -29.51233 -27.96678 -26.89665 -25.82945 -24.20499 -23.37710 -22.05994 -21.22661 -19.55323 -18.71903 -18.50086 -17.70389 -17.27156 -17.10317 -16.85943 -16.57536 -16.25746 -15.87233 -15.54783 -15.00107 -14.90101 -14.55793 -14.37816 -14.16953 -14.01672 -13.74893 -13.52630 -13.42070 -13.12914 -13.03747 -12.95443 -12.68677 -12.63000 -12.53565 -12.18523 -12.09944 -11.98299 -11.82129 -11.56005 -11.51509 -10.90931 -10.64763 -10.52847 -9.62434 -9.23156 -9.14075 -8.24469 -6.38542 -0.24724 0.37007 0.91834 1.28578 1.32644 1.42229 2.27994 2.52033 2.54168 2.79101 3.04220 3.40934 3.72971 3.82215 3.92365 4.00950 4.07232 4.13303 4.25016 4.29232 4.44887 4.59453 4.66604 4.70707 4.82577 4.89411 4.93564 5.01295 5.06462 5.12092 5.14362 5.15843 5.22214 5.25298 5.30708 5.33883 5.46004 5.48444 5.51528 5.59177 5.65746 5.90910 6.04975 6.07578 6.69879 6.87908 7.27533 7.57334 8.81344 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.009414 B = 0.006597 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.517848 B = 4243.543619 C = 6629.547572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.135 4.135 4 C 0.109 3.891 5 N -0.595 5.595 6 C 0.265 3.735 7 C -0.538 4.538 8 H 0.046 0.954 9 C 0.011 3.989 10 N -0.926 5.926 11 Si 0.957 3.043 12 H -0.259 1.259 13 H -0.281 1.281 14 H -0.279 1.279 15 C 0.511 3.489 16 O -0.580 6.580 17 C -0.206 4.206 18 C -0.024 4.024 19 C -0.052 4.052 20 C -0.107 4.107 21 C -0.102 4.102 22 C -0.155 4.155 23 C 0.043 3.957 24 F -0.166 7.166 25 C -0.087 4.087 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.026 0.974 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.033 0.967 36 H -0.011 1.011 37 H 0.266 0.734 38 H 0.171 0.829 39 H 0.193 0.807 40 H 0.168 0.832 41 H 0.170 0.830 42 H 0.145 0.855 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.070 4.686 -12.079 20.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.193 4.193 4 C -0.013 4.013 5 N -0.324 5.324 6 C 0.144 3.856 7 C -0.576 4.576 8 H 0.065 0.935 9 C -0.188 4.188 10 N -0.566 5.566 11 Si 0.782 3.218 12 H -0.184 1.184 13 H -0.206 1.206 14 H -0.204 1.204 15 C 0.302 3.698 16 O -0.462 6.462 17 C -0.226 4.226 18 C -0.043 4.043 19 C -0.053 4.053 20 C -0.125 4.125 21 C -0.119 4.119 22 C -0.173 4.173 23 C 0.024 3.976 24 F -0.145 7.145 25 C -0.106 4.106 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.051 0.949 36 H 0.007 0.993 37 H 0.075 0.925 38 H 0.188 0.812 39 H 0.210 0.790 40 H 0.186 0.814 41 H 0.187 0.813 42 H 0.163 0.837 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.657 4.062 -11.983 20.130 hybrid contribution -1.148 -0.612 1.896 2.300 sum 14.509 3.450 -10.086 18.004 Atomic orbital electron populations 1.21893 0.96546 1.00451 1.01581 1.21534 0.95409 0.97866 0.97634 1.21730 1.01965 0.93225 1.02393 1.21875 1.01095 0.79632 0.98719 1.48165 1.20226 1.08704 1.55259 1.18739 0.81323 0.94047 0.91504 1.21703 0.94584 1.44452 0.96911 0.93546 1.25754 0.94819 0.95258 1.03004 1.70034 1.00585 1.47818 1.38205 0.85575 0.77640 0.78598 0.80009 1.18359 1.20606 1.20418 1.19315 0.86637 0.85264 0.78554 1.90831 1.76469 1.18728 1.60220 1.23369 0.93041 1.02412 1.03824 1.22797 0.98486 0.89277 0.93781 1.19055 0.98879 0.95269 0.92067 1.21688 0.99217 0.92120 0.99465 1.21263 0.98152 0.97106 0.95398 1.21428 1.02845 0.99538 0.93528 1.18059 1.04374 0.94295 0.80844 1.91416 1.89695 1.91658 1.41770 1.21056 0.97668 0.93316 0.98601 0.93435 0.91431 0.95467 0.90777 0.90522 0.91462 0.92733 0.91630 0.88121 0.94904 0.99297 0.92512 0.81169 0.78990 0.81425 0.81293 0.83727 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.55 8.18 71.98 0.59 -3.96 16 2 C -0.10 -2.67 3.13 -10.79 -0.03 -2.70 16 3 C -0.14 -2.37 9.19 71.98 0.66 -1.71 16 4 C 0.11 3.41 4.57 86.38 0.39 3.80 16 5 N -0.59 -25.55 2.28 -831.18 -1.90 -27.45 16 6 C 0.27 14.67 4.23 85.63 0.36 15.03 16 7 C -0.54 -32.27 9.39 25.60 0.24 -32.03 16 8 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.01 0.64 5.46 84.66 0.46 1.10 16 10 N -0.93 -58.05 13.29 21.45 0.28 -57.76 16 11 Si 0.96 47.43 29.54 68.60 2.03 49.46 16 12 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 13 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 14 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 15 C 0.51 21.33 6.65 86.38 0.57 21.91 16 16 O -0.58 -29.73 11.74 -4.34 -0.05 -29.78 16 17 C -0.21 -5.63 9.03 23.62 0.21 -5.42 16 18 C -0.02 -0.56 9.81 23.84 0.23 -0.32 16 19 C -0.05 -1.58 4.53 -20.15 -0.09 -1.67 16 20 C -0.11 -2.51 9.79 22.58 0.22 -2.28 16 21 C -0.10 -2.38 10.03 22.22 0.22 -2.16 16 22 C -0.15 -4.72 10.02 22.39 0.22 -4.49 16 23 C 0.04 1.72 7.29 22.33 0.16 1.88 16 24 F -0.17 -7.44 17.26 44.97 0.78 -6.67 16 25 C -0.09 -3.43 6.58 22.62 0.15 -3.29 16 26 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.03 1.04 5.89 -2.39 -0.01 1.03 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 34 H 0.10 2.42 6.18 -2.39 -0.01 2.40 16 35 H 0.03 1.84 5.98 -2.39 -0.01 1.82 16 36 H -0.01 -0.72 7.42 -2.39 -0.02 -0.74 16 37 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 38 H 0.17 3.18 6.34 -2.91 -0.02 3.16 16 39 H 0.19 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 41 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 42 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 43 H 0.09 4.18 7.03 -2.91 -0.02 4.16 16 Total: -1.00 -82.19 357.43 6.73 -75.47 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 1.00 Total: 13.04 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 4.59 Total: -16.31 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -1.61 Total: -85.21 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.05 Total: -29.78 kcal Atomic # 9 Polarization: -7.44 SS G_CDS: 0.78 Total: -6.67 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -82.19 6.73 -75.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705966517.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.307 kcal (2) G-P(sol) polarization free energy of solvation -82.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds