Wall clock time and date at job start Tue Mar 31 2020 08:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34891 * 120.00161 * 2 1 4 4 C 1.46339 * 120.00472 * 179.97438 * 3 2 1 5 5 O 1.21713 * 119.99303 * 353.82211 * 4 3 2 6 6 N 1.34776 * 120.00541 * 173.81721 * 4 3 2 7 7 C 1.46500 * 119.99712 * 4.88689 * 6 4 3 8 8 C 1.50705 * 109.47264 * 89.99624 * 7 6 4 9 9 H 1.08000 * 119.99939 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00197 * 179.97438 * 8 7 6 11 11 N 1.31521 * 120.00173 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00382 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47102 * 89.99819 * 12 10 8 14 14 H 1.48496 * 109.47452 * 210.00089 * 12 10 8 15 15 H 1.48502 * 109.46739 * 329.99937 * 12 10 8 16 16 C 1.46499 * 120.00197 * 184.88424 * 6 4 3 17 17 C 1.53003 * 109.46859 * 124.86436 * 16 6 4 18 18 C 1.52994 * 109.47120 * 244.86295 * 16 6 4 19 19 C 1.47111 * 119.99985 * 179.97438 * 2 1 3 20 20 C 1.39897 * 120.14199 * 114.72706 * 19 2 1 21 21 C 1.37790 * 119.85269 * 179.76909 * 20 19 2 22 22 C 1.38685 * 120.14258 * 0.50471 * 21 20 19 23 23 F 1.35097 * 119.85322 * 179.72120 * 22 21 20 24 24 C 1.38687 * 120.29092 * 359.74605 * 22 21 20 25 25 C 1.37788 * 120.14746 * 359.97438 * 24 22 21 26 26 H 1.08998 * 109.47102 * 269.99963 * 1 2 3 27 27 H 1.08997 * 109.47090 * 150.00045 * 1 2 3 28 28 H 1.09003 * 109.46767 * 30.00154 * 1 2 3 29 29 H 1.08005 * 119.99836 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.47073 * 209.99864 * 7 6 4 31 31 H 1.09006 * 109.47200 * 329.99950 * 7 6 4 32 32 H 0.96993 * 120.00426 * 179.97438 * 11 10 8 33 33 H 1.08999 * 109.46742 * 4.86726 * 16 6 4 34 34 H 1.09000 * 109.46940 * 59.99840 * 17 16 6 35 35 H 1.08995 * 109.46706 * 180.02562 * 17 16 6 36 36 H 1.09002 * 109.47040 * 300.00101 * 17 16 6 37 37 H 1.08998 * 109.47291 * 59.99867 * 18 16 6 38 38 H 1.09000 * 109.47259 * 180.02562 * 18 16 6 39 39 H 1.09006 * 109.47335 * 300.00063 * 18 16 6 40 40 H 1.08000 * 120.07414 * 0.02562 * 20 19 2 41 41 H 1.07995 * 119.93153 * 180.22621 * 21 20 19 42 42 H 1.07998 * 119.92909 * 179.97438 * 24 22 21 43 43 H 1.08000 * 120.07744 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1815 1.1682 0.0000 4 6 3.6448 1.1683 0.0006 5 8 4.2533 0.1203 0.1145 6 7 4.3188 2.3286 -0.1251 7 6 3.5903 3.5993 -0.1546 8 6 3.4447 4.1276 1.2492 9 1 3.8535 3.5722 2.0803 10 6 2.7896 5.3200 1.4726 11 7 2.2912 5.9962 0.4606 12 14 2.6096 5.9752 3.2126 13 1 3.7725 6.8392 3.5389 14 1 1.3589 6.7690 3.3159 15 1 2.5545 4.8383 4.1664 16 6 5.7799 2.3192 -0.2322 17 6 6.2029 3.0616 -1.5014 18 6 6.3852 3.0125 0.9899 19 6 2.2425 -1.2740 0.0006 20 6 3.0320 -1.6299 -1.0981 21 6 3.7222 -2.8224 -1.0893 22 6 3.6272 -3.6739 0.0012 23 9 4.3020 -4.8443 0.0013 24 6 2.8421 -3.3295 1.0914 25 6 2.1514 -2.1373 1.0976 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 -0.8900 -0.5138 28 1 -0.3633 0.8900 -0.5139 29 1 1.6414 2.1035 -0.0004 30 1 4.1413 4.3200 -0.7588 31 1 2.6025 3.4418 -0.5878 32 1 1.8300 6.8348 0.6177 33 1 6.1341 1.2894 -0.2784 34 1 5.8486 4.0914 -1.4551 35 1 7.2899 3.0542 -1.5812 36 1 5.7716 2.5677 -2.3721 37 1 6.0838 2.4837 1.8941 38 1 7.4723 3.0060 0.9101 39 1 6.0309 4.0423 1.0362 40 1 3.1037 -0.9694 -1.9497 41 1 4.3350 -3.0967 -1.9352 42 1 2.7720 -3.9973 1.9373 43 1 1.5400 -1.8704 1.9470 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726532398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:22 Heat of formation + Delta-G solvation = -44.004875 kcal Electronic energy + Delta-G solvation = -25365.804108 eV Core-core repulsion = 21711.742028 eV Total energy + Delta-G solvation = -3654.062079 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.68961 -39.67398 -38.41788 -35.87883 -34.42816 -32.95384 -31.42525 -30.92476 -29.18273 -27.57800 -27.17436 -26.64318 -23.09423 -23.00269 -22.68553 -21.48474 -19.04673 -17.95768 -17.38079 -16.78185 -16.53833 -15.99691 -15.67911 -15.37108 -14.62746 -14.32848 -14.23553 -13.73573 -13.70775 -13.39516 -13.26509 -13.17759 -12.81885 -12.71270 -12.37382 -12.35507 -12.15725 -11.85844 -11.65673 -11.47732 -11.44063 -11.02808 -11.00423 -10.85830 -10.79788 -10.65023 -10.32627 -9.94399 -9.62448 -9.30633 -8.83804 -8.75923 -8.53327 -7.86607 -7.63840 -6.19091 -4.24916 1.20374 1.55447 1.87966 3.21006 3.28696 3.32506 3.85681 3.92838 4.02896 4.33491 4.49387 4.84391 4.96464 5.04803 5.13761 5.21460 5.46007 5.51444 5.57002 5.67047 5.70783 5.75567 5.83217 5.89636 6.10523 6.11971 6.13076 6.15577 6.20376 6.34542 6.38451 6.39994 6.44480 6.61502 6.72673 6.74964 6.82498 6.85422 7.04132 7.15648 7.22201 7.60226 7.77233 8.06714 8.37992 8.80825 9.06040 9.42244 10.87391 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015925 B = 0.004381 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.812866 B = 6389.809869 C = 7201.750687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.046 4.046 3 C -0.167 4.167 4 C 0.538 3.462 5 O -0.564 6.564 6 N -0.584 5.584 7 C 0.234 3.766 8 C -0.530 4.530 9 H 0.061 0.939 10 C 0.064 3.936 11 N -0.893 5.893 12 Si 0.893 3.107 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.138 3.862 17 C -0.158 4.158 18 C -0.154 4.154 19 C -0.028 4.028 20 C -0.032 4.032 21 C -0.154 4.154 22 C 0.086 3.914 23 F -0.149 7.149 24 C -0.157 4.157 25 C -0.083 4.083 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.145 0.855 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.264 0.736 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.046 0.954 39 H 0.077 0.923 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.884 -11.515 -3.139 11.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.048 4.048 3 C -0.188 4.188 4 C 0.329 3.671 5 O -0.447 6.447 6 N -0.314 5.314 7 C 0.114 3.886 8 C -0.568 4.568 9 H 0.080 0.920 10 C -0.138 4.138 11 N -0.531 5.531 12 Si 0.721 3.279 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.198 1.198 16 C 0.035 3.965 17 C -0.216 4.216 18 C -0.212 4.212 19 C -0.028 4.028 20 C -0.050 4.050 21 C -0.173 4.173 22 C 0.067 3.933 23 F -0.128 7.128 24 C -0.176 4.176 25 C -0.101 4.101 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.163 0.837 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.622 -11.871 -3.139 12.295 hybrid contribution 0.089 0.653 1.110 1.291 sum -0.533 -11.219 -2.029 11.413 Atomic orbital electron populations 1.20832 0.90465 1.02940 1.02704 1.20932 0.95239 0.91527 0.97141 1.23304 0.94384 0.98566 1.02499 1.18305 0.88224 0.83540 0.77051 1.90776 1.70381 1.31183 1.52312 1.48206 1.06168 1.07909 1.69092 1.19459 0.92001 0.79514 0.97612 1.21521 1.36333 1.06050 0.92920 0.92045 1.24919 0.95216 0.96549 0.97129 1.69917 1.37276 1.15592 1.30364 0.86568 0.77646 0.79040 0.84685 1.20570 1.21108 1.19831 1.20802 0.80900 1.00119 0.94725 1.22124 1.00453 1.01779 0.97271 1.22111 0.98568 1.02937 0.97610 1.18747 0.96591 0.93176 0.94291 1.20834 0.92804 0.93945 0.97439 1.20848 1.02714 0.95439 0.98266 1.17752 0.96063 0.82979 0.96498 1.91445 1.78596 1.45850 1.96917 1.20843 0.99923 0.98835 0.98009 1.20914 0.98984 0.92674 0.97546 0.90681 0.91530 0.90739 0.83724 0.94303 0.94453 0.92600 0.89755 0.91452 0.92414 0.93089 0.93027 0.93456 0.90446 0.86012 0.85480 0.85424 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.02 36.00 0.36 -0.96 16 2 C -0.05 -0.71 5.48 -102.21 -0.56 -1.27 16 3 C -0.17 -3.03 8.87 -37.51 -0.33 -3.36 16 4 C 0.54 10.95 7.40 -13.00 -0.10 10.85 16 5 O -0.56 -11.99 11.83 5.18 0.06 -11.93 16 6 N -0.58 -12.00 2.39 -169.13 -0.40 -12.41 16 7 C 0.23 5.33 4.51 -5.19 -0.02 5.31 16 8 C -0.53 -13.28 7.85 -34.44 -0.27 -13.55 16 9 H 0.06 1.60 7.59 -52.49 -0.40 1.20 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 11 N -0.89 -23.86 13.29 55.43 0.74 -23.12 16 12 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 16 C 0.14 2.56 3.24 -67.93 -0.22 2.34 16 17 C -0.16 -2.54 9.07 37.16 0.34 -2.21 16 18 C -0.15 -2.80 8.60 37.15 0.32 -2.48 16 19 C -0.03 -0.43 3.71 -105.06 -0.39 -0.82 16 20 C -0.03 -0.49 7.20 -39.12 -0.28 -0.78 16 21 C -0.15 -2.27 10.01 -39.58 -0.40 -2.66 16 22 C 0.09 1.29 7.31 -39.25 -0.29 1.00 16 23 F -0.15 -2.21 17.26 2.25 0.04 -2.18 16 24 C -0.16 -2.20 10.01 -39.58 -0.40 -2.60 16 25 C -0.08 -1.20 9.78 -39.13 -0.38 -1.58 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.68 8.11 -51.93 -0.42 0.25 16 28 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 29 H 0.15 2.73 6.19 -52.48 -0.32 2.40 16 30 H 0.04 0.93 6.18 -51.93 -0.32 0.61 16 31 H 0.04 0.88 5.98 -51.93 -0.31 0.57 16 32 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.08 1.60 6.94 -51.93 -0.36 1.24 16 34 H 0.07 1.16 6.52 -51.93 -0.34 0.82 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.55 6.92 -51.93 -0.36 1.19 16 40 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 43 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 357.90 15.07 5.39 5.39 Total: -1.00 -27.96 357.90 -8.10 -36.06 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.19 Total: 4.17 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -2.72 Total: -11.22 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.33 Total: -35.53 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.06 Total: -11.93 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.96 -8.10 -36.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726532398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.942 kcal (2) G-P(sol) polarization free energy of solvation -27.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds