Wall clock time and date at job start Tue Mar 31 2020 08:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34891 * 120.00161 * 2 1 4 4 C 1.46339 * 120.00472 * 179.97438 * 3 2 1 5 5 O 1.21713 * 119.99303 * 353.82211 * 4 3 2 6 6 N 1.34776 * 120.00541 * 173.81721 * 4 3 2 7 7 C 1.46500 * 119.99712 * 4.88689 * 6 4 3 8 8 C 1.50705 * 109.47264 * 89.99624 * 7 6 4 9 9 H 1.08000 * 119.99939 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00197 * 179.97438 * 8 7 6 11 11 N 1.31521 * 120.00173 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00382 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47102 * 89.99819 * 12 10 8 14 14 H 1.48496 * 109.47452 * 210.00089 * 12 10 8 15 15 H 1.48502 * 109.46739 * 329.99937 * 12 10 8 16 16 C 1.46499 * 120.00197 * 184.88424 * 6 4 3 17 17 C 1.53003 * 109.46859 * 124.86436 * 16 6 4 18 18 C 1.52994 * 109.47120 * 244.86295 * 16 6 4 19 19 C 1.47111 * 119.99985 * 179.97438 * 2 1 3 20 20 C 1.39897 * 120.14199 * 114.72706 * 19 2 1 21 21 C 1.37790 * 119.85269 * 179.76909 * 20 19 2 22 22 C 1.38685 * 120.14258 * 0.50471 * 21 20 19 23 23 F 1.35097 * 119.85322 * 179.72120 * 22 21 20 24 24 C 1.38687 * 120.29092 * 359.74605 * 22 21 20 25 25 C 1.37788 * 120.14746 * 359.97438 * 24 22 21 26 26 H 1.08998 * 109.47102 * 269.99963 * 1 2 3 27 27 H 1.08997 * 109.47090 * 150.00045 * 1 2 3 28 28 H 1.09003 * 109.46767 * 30.00154 * 1 2 3 29 29 H 1.08005 * 119.99836 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.47073 * 209.99864 * 7 6 4 31 31 H 1.09006 * 109.47200 * 329.99950 * 7 6 4 32 32 H 0.96993 * 120.00426 * 179.97438 * 11 10 8 33 33 H 1.08999 * 109.46742 * 4.86726 * 16 6 4 34 34 H 1.09000 * 109.46940 * 59.99840 * 17 16 6 35 35 H 1.08995 * 109.46706 * 180.02562 * 17 16 6 36 36 H 1.09002 * 109.47040 * 300.00101 * 17 16 6 37 37 H 1.08998 * 109.47291 * 59.99867 * 18 16 6 38 38 H 1.09000 * 109.47259 * 180.02562 * 18 16 6 39 39 H 1.09006 * 109.47335 * 300.00063 * 18 16 6 40 40 H 1.08000 * 120.07414 * 0.02562 * 20 19 2 41 41 H 1.07995 * 119.93153 * 180.22621 * 21 20 19 42 42 H 1.07998 * 119.92909 * 179.97438 * 24 22 21 43 43 H 1.08000 * 120.07744 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1815 1.1682 0.0000 4 6 3.6448 1.1683 0.0006 5 8 4.2533 0.1203 0.1145 6 7 4.3188 2.3286 -0.1251 7 6 3.5903 3.5993 -0.1546 8 6 3.4447 4.1276 1.2492 9 1 3.8535 3.5722 2.0803 10 6 2.7896 5.3200 1.4726 11 7 2.2912 5.9962 0.4606 12 14 2.6096 5.9752 3.2126 13 1 3.7725 6.8392 3.5389 14 1 1.3589 6.7690 3.3159 15 1 2.5545 4.8383 4.1664 16 6 5.7799 2.3192 -0.2322 17 6 6.2029 3.0616 -1.5014 18 6 6.3852 3.0125 0.9899 19 6 2.2425 -1.2740 0.0006 20 6 3.0320 -1.6299 -1.0981 21 6 3.7222 -2.8224 -1.0893 22 6 3.6272 -3.6739 0.0012 23 9 4.3020 -4.8443 0.0013 24 6 2.8421 -3.3295 1.0914 25 6 2.1514 -2.1373 1.0976 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 -0.8900 -0.5138 28 1 -0.3633 0.8900 -0.5139 29 1 1.6414 2.1035 -0.0004 30 1 4.1413 4.3200 -0.7588 31 1 2.6025 3.4418 -0.5878 32 1 1.8300 6.8348 0.6177 33 1 6.1341 1.2894 -0.2784 34 1 5.8486 4.0914 -1.4551 35 1 7.2899 3.0542 -1.5812 36 1 5.7716 2.5677 -2.3721 37 1 6.0838 2.4837 1.8941 38 1 7.4723 3.0060 0.9101 39 1 6.0309 4.0423 1.0362 40 1 3.1037 -0.9694 -1.9497 41 1 4.3350 -3.0967 -1.9352 42 1 2.7720 -3.9973 1.9373 43 1 1.5400 -1.8704 1.9470 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726532398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:22 Heat of formation + Delta-G solvation = -55.926126 kcal Electronic energy + Delta-G solvation = -25366.321052 eV Core-core repulsion = 21711.742028 eV Total energy + Delta-G solvation = -3654.579023 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.84563 -41.11184 -39.70964 -37.39586 -35.74401 -34.80198 -33.02059 -32.05649 -30.34726 -29.15470 -28.66680 -28.05377 -24.89750 -24.29488 -23.82886 -22.84321 -20.40637 -19.40164 -18.63708 -18.43918 -18.27031 -17.20666 -17.15453 -16.53595 -16.37240 -15.80208 -15.65253 -15.09112 -15.00111 -14.55013 -14.50297 -14.37608 -14.22690 -14.12945 -13.85228 -13.70276 -13.36569 -13.26979 -13.22241 -12.97242 -12.84613 -12.72661 -12.52300 -12.27905 -12.18271 -12.02022 -11.95662 -11.62053 -11.44124 -10.77975 -10.51311 -10.11658 -9.94710 -9.29098 -9.11030 -8.15570 -6.27468 -0.03327 0.41237 0.60697 1.40512 1.43725 1.52168 2.32675 2.50774 2.52387 2.70144 3.14315 3.35366 3.65004 3.81630 3.87263 3.98821 4.11982 4.28669 4.35522 4.42791 4.47914 4.57691 4.64922 4.72580 4.80948 4.82905 4.92575 4.94831 4.99963 5.01317 5.08799 5.14121 5.19014 5.21463 5.24474 5.41572 5.43600 5.49477 5.56239 5.61576 5.74341 5.98552 6.03149 6.13876 6.66052 6.90513 7.38600 7.51711 8.89497 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015925 B = 0.004381 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.812866 B = 6389.809869 C = 7201.750687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.009 4.009 3 C -0.210 4.210 4 C 0.534 3.466 5 O -0.578 6.578 6 N -0.591 5.591 7 C 0.252 3.748 8 C -0.530 4.530 9 H 0.048 0.952 10 C 0.024 3.976 11 N -0.920 5.920 12 Si 0.948 3.052 13 H -0.277 1.277 14 H -0.280 1.280 15 H -0.275 1.275 16 C 0.132 3.868 17 C -0.148 4.148 18 C -0.145 4.145 19 C -0.049 4.049 20 C -0.043 4.043 21 C -0.159 4.159 22 C 0.075 3.925 23 F -0.150 7.150 24 C -0.156 4.156 25 C -0.086 4.086 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.132 0.868 30 H 0.025 0.975 31 H 0.028 0.972 32 H 0.266 0.734 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.032 0.968 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.119 0.881 41 H 0.142 0.858 42 H 0.153 0.847 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.161 -12.588 -2.485 12.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.011 4.011 3 C -0.230 4.230 4 C 0.326 3.674 5 O -0.462 6.462 6 N -0.321 5.321 7 C 0.131 3.869 8 C -0.569 4.569 9 H 0.066 0.934 10 C -0.176 4.176 11 N -0.559 5.559 12 Si 0.774 3.226 13 H -0.203 1.203 14 H -0.206 1.206 15 H -0.200 1.200 16 C 0.028 3.972 17 C -0.206 4.206 18 C -0.203 4.203 19 C -0.049 4.049 20 C -0.062 4.062 21 C -0.178 4.178 22 C 0.056 3.944 23 F -0.129 7.129 24 C -0.174 4.174 25 C -0.104 4.104 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.149 0.851 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.137 0.863 41 H 0.160 0.840 42 H 0.170 0.830 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.892 -12.951 -2.488 13.218 hybrid contribution 0.178 0.840 0.891 1.238 sum -0.714 -12.111 -1.597 12.237 Atomic orbital electron populations 1.20972 0.87667 1.04267 1.04133 1.21343 0.97059 0.90533 0.92170 1.23066 0.93240 0.99138 1.07556 1.18655 0.89160 0.83158 0.76391 1.90751 1.70939 1.31304 1.53211 1.48221 1.07009 1.07269 1.69617 1.19069 0.91538 0.80136 0.96149 1.21620 1.35843 1.05968 0.93467 0.93411 1.25532 0.95081 0.96818 1.00157 1.69998 1.38053 1.15984 1.31893 0.85707 0.77696 0.78313 0.80867 1.20273 1.20558 1.19976 1.20985 0.79911 1.00279 0.95979 1.22037 1.02306 1.00262 0.96020 1.22014 1.00560 1.01006 0.96710 1.18948 0.97311 0.93539 0.95111 1.20881 0.93223 0.94369 0.97679 1.21038 1.02632 0.95183 0.98907 1.17951 0.96422 0.83069 0.96963 1.91443 1.78649 1.45830 1.96943 1.21136 0.98953 0.98964 0.98381 1.21165 0.99095 0.92460 0.97638 0.88908 0.89352 0.90277 0.85058 0.95664 0.95397 0.92475 0.90052 0.93009 0.89466 0.92869 0.94829 0.90234 0.92657 0.86302 0.84034 0.82979 0.83549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.43 10.02 71.23 0.71 -1.72 16 2 C -0.01 -0.26 5.48 -18.30 -0.10 -0.36 16 3 C -0.21 -7.70 8.87 23.61 0.21 -7.49 16 4 C 0.53 22.10 7.40 86.35 0.64 22.74 16 5 O -0.58 -24.70 11.83 -4.39 -0.05 -24.75 16 6 N -0.59 -24.86 2.39 -807.21 -1.93 -26.78 16 7 C 0.25 11.83 4.51 85.63 0.39 12.22 16 8 C -0.53 -27.12 7.85 25.60 0.20 -26.92 16 9 H 0.05 2.54 7.59 -2.91 -0.02 2.52 16 10 C 0.02 1.25 5.46 84.65 0.46 1.71 16 11 N -0.92 -49.63 13.29 21.45 0.28 -49.35 16 12 Si 0.95 41.57 29.54 68.60 2.03 43.59 16 13 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 14 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 16 C 0.13 4.87 3.24 44.99 0.15 5.02 16 17 C -0.15 -4.68 9.07 71.98 0.65 -4.03 16 18 C -0.14 -5.25 8.60 71.98 0.62 -4.63 16 19 C -0.05 -1.46 3.71 -20.15 -0.07 -1.54 16 20 C -0.04 -1.31 7.20 22.57 0.16 -1.15 16 21 C -0.16 -4.51 10.01 22.27 0.22 -4.29 16 22 C 0.07 2.12 7.31 22.48 0.16 2.28 16 23 F -0.15 -4.21 17.26 44.97 0.78 -3.43 16 24 C -0.16 -4.01 10.01 22.27 0.22 -3.79 16 25 C -0.09 -2.28 9.78 22.57 0.22 -2.06 16 26 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.09 1.53 8.11 -2.39 -0.02 1.52 16 28 H 0.08 1.65 8.08 -2.39 -0.02 1.63 16 29 H 0.13 5.13 6.19 -2.91 -0.02 5.12 16 30 H 0.03 1.25 6.18 -2.39 -0.01 1.24 16 31 H 0.03 1.37 5.98 -2.38 -0.01 1.35 16 32 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 33 H 0.08 3.07 6.94 -2.39 -0.02 3.05 16 34 H 0.05 1.79 6.52 -2.39 -0.02 1.78 16 35 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.05 2.24 6.92 -2.38 -0.02 2.22 16 40 H 0.12 3.57 8.06 -2.91 -0.02 3.55 16 41 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 42 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 43 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -59.81 357.90 6.96 -52.85 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 1.00 Total: 21.87 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 4.85 Total: -14.00 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -1.64 Total: -76.13 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.05 Total: -24.75 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.78 Total: -3.43 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Total: -59.81 6.96 -52.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726532398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.077 kcal (2) G-P(sol) polarization free energy of solvation -59.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds