Wall clock time and date at job start Tue Mar 31 2020 09:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47195 * 2 1 4 4 C 1.53002 * 109.47026 * 239.99984 * 2 1 3 5 5 C 1.50700 * 109.47023 * 64.99804 * 4 2 1 6 6 O 1.21288 * 120.00065 * 0.02562 * 5 4 2 7 7 N 1.34783 * 119.99775 * 180.02562 * 5 4 2 8 8 C 1.46493 * 120.00011 * 355.26985 * 7 5 4 9 9 C 1.50697 * 109.47271 * 89.99910 * 8 7 5 10 10 H 1.08001 * 120.00385 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00260 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99700 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00123 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47054 * 60.00327 * 13 11 9 15 15 H 1.48500 * 109.46625 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46885 * 299.99881 * 13 11 9 17 17 C 1.40029 * 119.99459 * 175.26734 * 7 5 4 18 18 C 1.38850 * 120.04805 * 291.84876 * 17 7 5 19 19 C 1.38111 * 119.95552 * 179.77307 * 18 17 7 20 20 C 1.38472 * 120.04474 * 0.50815 * 19 18 17 21 21 F 1.35096 * 119.95720 * 179.72298 * 20 19 18 22 22 C 1.38474 * 120.09154 * 359.74809 * 20 19 18 23 23 C 1.38114 * 120.04258 * 359.97438 * 22 20 19 24 24 C 1.53001 * 109.47379 * 120.00187 * 2 1 3 25 25 C 1.53001 * 117.49587 * 248.62004 * 24 2 1 26 26 C 1.52993 * 117.49899 * 179.97438 * 24 2 1 27 27 H 1.08997 * 109.47605 * 59.99756 * 1 2 3 28 28 H 1.09001 * 109.47248 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46852 * 299.99961 * 1 2 3 30 30 H 1.09007 * 109.46976 * 305.00239 * 4 2 1 31 31 H 1.08999 * 109.47331 * 185.00148 * 4 2 1 32 32 H 1.09003 * 109.47099 * 209.99935 * 8 7 5 33 33 H 1.09000 * 109.47490 * 329.99582 * 8 7 5 34 34 H 0.96997 * 119.99941 * 180.02562 * 12 11 9 35 35 H 1.08002 * 120.02016 * 0.02562 * 18 17 7 36 36 H 1.07999 * 119.97801 * 180.23438 * 19 18 17 37 37 H 1.08000 * 119.98580 * 179.97438 * 22 20 19 38 38 H 1.08003 * 120.02570 * 179.97438 * 23 22 20 39 39 H 1.09001 * 115.54759 * 34.32572 * 24 2 1 40 40 H 1.08997 * 117.50429 * 359.97438 * 25 24 2 41 41 H 1.09005 * 117.49556 * 145.01713 * 25 24 2 42 42 H 1.09006 * 117.50004 * 214.97413 * 26 24 2 43 43 H 1.08997 * 117.50352 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0570 -2.4766 6 8 1.0115 1.0874 -2.3632 7 7 1.9843 -0.3920 -3.7002 8 6 2.8323 -1.5791 -3.8337 9 6 1.9659 -2.8103 -3.9014 10 1 0.8911 -2.7178 -3.8507 11 6 2.5454 -4.0549 -4.0294 12 7 3.8542 -4.1674 -4.0927 13 14 1.4714 -5.5809 -4.1141 14 1 0.5660 -5.4845 -5.2873 15 1 2.3310 -6.7841 -4.2505 16 1 0.6636 -5.6872 -2.8727 17 6 1.5301 0.2763 -4.8439 18 6 0.1809 0.2562 -5.1710 19 6 -0.2657 0.9199 -6.2969 20 6 0.6326 1.5962 -7.1050 21 9 0.1947 2.2401 -8.2089 22 6 1.9794 1.6130 -6.7835 23 6 2.4292 0.9553 -5.6553 24 6 2.0400 -0.7213 1.2492 25 6 2.7420 0.1226 2.3150 26 6 3.5550 -0.8286 1.4339 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.6052 -1.7199 -1.2952 31 1 3.1262 -0.7995 -1.2056 32 1 3.4253 -1.5014 -4.7450 33 1 3.4970 -1.6495 -2.9727 34 1 4.2618 -5.0429 -4.1831 35 1 -0.5195 -0.2746 -4.5432 36 1 -1.3156 0.9077 -6.5496 37 1 2.6787 2.1406 -7.4152 38 1 3.4798 0.9683 -5.4051 39 1 1.4310 -1.5585 1.5902 40 1 2.8408 1.1916 2.1262 41 1 2.5947 -0.1593 3.3577 42 1 3.9425 -1.7361 1.8971 43 1 4.1884 -0.3858 0.6653 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732094684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:28 Heat of formation + Delta-G solvation = -42.223874 kcal Electronic energy + Delta-G solvation = -25136.839099 eV Core-core repulsion = 21482.854249 eV Total energy + Delta-G solvation = -3653.984849 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.63570 -40.04821 -38.40266 -37.30554 -35.04656 -32.91729 -32.57465 -30.86888 -29.57552 -27.53055 -26.78385 -23.54291 -23.26563 -22.52905 -22.27469 -21.89160 -19.75374 -18.61613 -17.42472 -16.87071 -16.71059 -15.97731 -15.88833 -15.40955 -15.30859 -14.66560 -14.58211 -14.20104 -14.05981 -13.53127 -13.29306 -13.13066 -12.76096 -12.57915 -12.47031 -12.31660 -11.89169 -11.70353 -11.53101 -11.43902 -11.18315 -10.99023 -10.90608 -10.81397 -10.79071 -10.46912 -10.27129 -10.01068 -9.90555 -9.73638 -9.13251 -8.81335 -8.63154 -8.55763 -7.70771 -6.25755 -4.33296 1.43345 1.54612 3.19949 3.21365 3.25430 3.29466 3.66078 3.91392 3.98696 4.27880 4.53587 4.79702 5.03988 5.05572 5.07661 5.08413 5.10242 5.27364 5.50279 5.55307 5.56153 5.67729 5.72095 5.78633 5.87487 5.88774 6.03242 6.15090 6.16578 6.22561 6.25027 6.34072 6.38009 6.39889 6.45609 6.66613 6.70104 6.76730 6.78697 7.03826 7.10259 7.53507 7.68779 7.94342 8.11450 8.68841 8.88603 9.34449 10.81215 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.009073 B = 0.005673 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3085.239056 B = 4934.548274 C = 7089.013716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.044 4.044 3 H 0.072 0.928 4 C -0.126 4.126 5 C 0.523 3.477 6 O -0.557 6.557 7 N -0.564 5.564 8 C 0.240 3.760 9 C -0.539 4.539 10 H 0.061 0.939 11 C 0.068 3.932 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C 0.170 3.830 18 C -0.080 4.080 19 C -0.144 4.144 20 C 0.078 3.922 21 F -0.147 7.147 22 C -0.144 4.144 23 C -0.098 4.098 24 C -0.143 4.143 25 C -0.183 4.183 26 C -0.180 4.180 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.267 0.733 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.227 7.259 4.145 8.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.063 4.063 3 H 0.091 0.909 4 C -0.166 4.166 5 C 0.313 3.687 6 O -0.437 6.437 7 N -0.292 5.292 8 C 0.121 3.879 9 C -0.578 4.578 10 H 0.079 0.921 11 C -0.135 4.135 12 N -0.527 5.527 13 Si 0.723 3.277 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.200 1.200 17 C 0.078 3.922 18 C -0.099 4.099 19 C -0.163 4.163 20 C 0.059 3.941 21 F -0.126 7.126 22 C -0.164 4.164 23 C -0.117 4.117 24 C -0.161 4.161 25 C -0.220 4.220 26 C -0.216 4.216 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.110 0.890 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.121 0.879 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.380 7.642 4.176 9.027 hybrid contribution -0.444 -1.121 -0.367 1.260 sum -2.823 6.521 3.808 8.062 Atomic orbital electron populations 1.21896 0.94696 1.01426 1.02471 1.20471 0.96281 0.98451 0.91064 0.90922 1.21677 1.03032 1.00934 0.90918 1.20749 0.78552 0.84740 0.84638 1.90598 1.41420 1.24850 1.86809 1.46066 1.51053 1.29378 1.02707 1.19582 0.89491 0.79929 0.98871 1.21369 0.93586 0.90714 1.52107 0.92067 1.24906 0.95026 0.99037 0.94569 1.69898 1.09084 1.24832 1.48923 0.86579 0.80295 0.81897 0.78901 1.20083 1.21071 1.19990 1.17625 0.92048 0.93586 0.88920 1.21107 0.95532 0.97626 0.95675 1.20923 0.99702 0.99889 0.95818 1.17617 0.92998 0.97919 0.85586 1.91450 1.90271 1.79818 1.51063 1.20884 0.93871 1.02742 0.98855 1.21086 1.00275 0.95933 0.94435 1.22383 0.94795 1.01564 0.97399 1.22994 1.05476 0.97537 0.96024 1.22941 0.94296 1.01455 1.02953 0.90617 0.93266 0.93441 0.87497 0.89045 0.94389 0.93740 0.92351 0.85211 0.84978 0.84907 0.84994 0.87902 0.89045 0.89303 0.88951 0.88693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.92 37.15 0.33 -1.86 16 2 C -0.04 -0.65 2.19 -90.62 -0.20 -0.85 16 3 H 0.07 1.14 7.71 -51.93 -0.40 0.74 16 4 C -0.13 -2.16 3.75 -27.88 -0.10 -2.26 16 5 C 0.52 10.20 7.25 -10.98 -0.08 10.12 16 6 O -0.56 -11.63 13.73 5.55 0.08 -11.55 16 7 N -0.56 -11.44 2.51 -114.72 -0.29 -11.73 16 8 C 0.24 5.41 4.88 -5.20 -0.03 5.38 16 9 C -0.54 -13.38 9.16 -34.44 -0.32 -13.70 16 10 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 11 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -23.64 13.29 55.43 0.74 -22.91 16 13 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 C 0.17 3.27 4.75 -83.66 -0.40 2.87 16 18 C -0.08 -1.44 9.56 -39.40 -0.38 -1.81 16 19 C -0.14 -2.28 10.02 -39.54 -0.40 -2.68 16 20 C 0.08 1.23 7.30 -39.41 -0.29 0.95 16 21 F -0.15 -2.25 17.26 2.25 0.04 -2.21 16 22 C -0.14 -2.20 10.02 -39.54 -0.40 -2.60 16 23 C -0.10 -1.67 9.69 -39.40 -0.38 -2.05 16 24 C -0.14 -1.85 5.15 -90.62 -0.47 -2.32 16 25 C -0.18 -2.08 10.18 -26.71 -0.27 -2.35 16 26 C -0.18 -2.20 9.67 -26.71 -0.26 -2.45 16 27 H 0.07 1.28 5.95 -51.93 -0.31 0.98 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.11 1.96 7.91 -51.92 -0.41 1.55 16 31 H 0.09 1.53 6.24 -51.93 -0.32 1.20 16 32 H 0.04 0.91 7.86 -51.93 -0.41 0.51 16 33 H 0.04 1.02 6.47 -51.93 -0.34 0.68 16 34 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.13 2.32 8.06 -52.49 -0.42 1.90 16 36 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.13 2.08 8.06 -52.48 -0.42 1.66 16 39 H 0.10 1.29 8.11 -51.93 -0.42 0.87 16 40 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 LS Contribution 362.40 15.07 5.46 5.46 Total: -1.00 -27.01 362.40 -9.07 -36.08 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -6.35 Total: 5.86 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -3.72 Total: -13.97 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.45 Total: -34.64 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.01 -9.07 -36.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732094684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.147 kcal (2) G-P(sol) polarization free energy of solvation -27.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds