Wall clock time and date at job start Tue Mar 31 2020 09:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47195 * 2 1 4 4 C 1.53002 * 109.47026 * 239.99984 * 2 1 3 5 5 C 1.50700 * 109.47023 * 64.99804 * 4 2 1 6 6 O 1.21288 * 120.00065 * 0.02562 * 5 4 2 7 7 N 1.34783 * 119.99775 * 180.02562 * 5 4 2 8 8 C 1.46493 * 120.00011 * 355.26985 * 7 5 4 9 9 C 1.50697 * 109.47271 * 89.99910 * 8 7 5 10 10 H 1.08001 * 120.00385 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00260 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99700 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00123 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47054 * 60.00327 * 13 11 9 15 15 H 1.48500 * 109.46625 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46885 * 299.99881 * 13 11 9 17 17 C 1.40029 * 119.99459 * 175.26734 * 7 5 4 18 18 C 1.38850 * 120.04805 * 291.84876 * 17 7 5 19 19 C 1.38111 * 119.95552 * 179.77307 * 18 17 7 20 20 C 1.38472 * 120.04474 * 0.50815 * 19 18 17 21 21 F 1.35096 * 119.95720 * 179.72298 * 20 19 18 22 22 C 1.38474 * 120.09154 * 359.74809 * 20 19 18 23 23 C 1.38114 * 120.04258 * 359.97438 * 22 20 19 24 24 C 1.53001 * 109.47379 * 120.00187 * 2 1 3 25 25 C 1.53001 * 117.49587 * 248.62004 * 24 2 1 26 26 C 1.52993 * 117.49899 * 179.97438 * 24 2 1 27 27 H 1.08997 * 109.47605 * 59.99756 * 1 2 3 28 28 H 1.09001 * 109.47248 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46852 * 299.99961 * 1 2 3 30 30 H 1.09007 * 109.46976 * 305.00239 * 4 2 1 31 31 H 1.08999 * 109.47331 * 185.00148 * 4 2 1 32 32 H 1.09003 * 109.47099 * 209.99935 * 8 7 5 33 33 H 1.09000 * 109.47490 * 329.99582 * 8 7 5 34 34 H 0.96997 * 119.99941 * 180.02562 * 12 11 9 35 35 H 1.08002 * 120.02016 * 0.02562 * 18 17 7 36 36 H 1.07999 * 119.97801 * 180.23438 * 19 18 17 37 37 H 1.08000 * 119.98580 * 179.97438 * 22 20 19 38 38 H 1.08003 * 120.02570 * 179.97438 * 23 22 20 39 39 H 1.09001 * 115.54759 * 34.32572 * 24 2 1 40 40 H 1.08997 * 117.50429 * 359.97438 * 25 24 2 41 41 H 1.09005 * 117.49556 * 145.01713 * 25 24 2 42 42 H 1.09006 * 117.50004 * 214.97413 * 26 24 2 43 43 H 1.08997 * 117.50352 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0570 -2.4766 6 8 1.0115 1.0874 -2.3632 7 7 1.9843 -0.3920 -3.7002 8 6 2.8323 -1.5791 -3.8337 9 6 1.9659 -2.8103 -3.9014 10 1 0.8911 -2.7178 -3.8507 11 6 2.5454 -4.0549 -4.0294 12 7 3.8542 -4.1674 -4.0927 13 14 1.4714 -5.5809 -4.1141 14 1 0.5660 -5.4845 -5.2873 15 1 2.3310 -6.7841 -4.2505 16 1 0.6636 -5.6872 -2.8727 17 6 1.5301 0.2763 -4.8439 18 6 0.1809 0.2562 -5.1710 19 6 -0.2657 0.9199 -6.2969 20 6 0.6326 1.5962 -7.1050 21 9 0.1947 2.2401 -8.2089 22 6 1.9794 1.6130 -6.7835 23 6 2.4292 0.9553 -5.6553 24 6 2.0400 -0.7213 1.2492 25 6 2.7420 0.1226 2.3150 26 6 3.5550 -0.8286 1.4339 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.6052 -1.7199 -1.2952 31 1 3.1262 -0.7995 -1.2056 32 1 3.4253 -1.5014 -4.7450 33 1 3.4970 -1.6495 -2.9727 34 1 4.2618 -5.0429 -4.1831 35 1 -0.5195 -0.2746 -4.5432 36 1 -1.3156 0.9077 -6.5496 37 1 2.6787 2.1406 -7.4152 38 1 3.4798 0.9683 -5.4051 39 1 1.4310 -1.5585 1.5902 40 1 2.8408 1.1916 2.1262 41 1 2.5947 -0.1593 3.3577 42 1 3.9425 -1.7361 1.8971 43 1 4.1884 -0.3858 0.6653 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732094684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:27 Heat of formation + Delta-G solvation = -52.372073 kcal Electronic energy + Delta-G solvation = -25137.279158 eV Core-core repulsion = 21482.854249 eV Total energy + Delta-G solvation = -3654.424908 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.88568 -41.54060 -39.68294 -38.49845 -36.68320 -34.59509 -34.00699 -32.17499 -31.00782 -29.20082 -28.28176 -25.11101 -24.67054 -23.93845 -23.38083 -23.01758 -20.95687 -20.03631 -18.79631 -18.65971 -18.17981 -17.59393 -17.31091 -16.56450 -16.51170 -16.34625 -15.95839 -15.56489 -15.36009 -14.80623 -14.56413 -14.52607 -14.26367 -14.09904 -13.85568 -13.71617 -13.49437 -13.20607 -12.92559 -12.89036 -12.64001 -12.38830 -12.23984 -12.19290 -12.07555 -12.01406 -11.77524 -11.67088 -11.05980 -10.83142 -10.68128 -10.53307 -10.11446 -10.07614 -9.22776 -8.20915 -6.34648 0.07906 0.23864 1.42314 1.43599 1.50302 1.68057 2.15927 2.41337 2.57080 2.97267 3.10336 3.24354 3.65423 3.76815 3.89020 3.92018 4.00908 4.13282 4.23387 4.25286 4.38160 4.42179 4.46229 4.56251 4.65689 4.84387 4.87315 4.89135 4.92962 4.98500 5.05304 5.07728 5.12610 5.13048 5.21677 5.24945 5.32952 5.43233 5.44079 5.54364 5.63993 5.71497 6.02086 6.04252 6.46814 6.76053 7.27212 7.38851 8.84666 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.009073 B = 0.005673 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3085.239056 B = 4934.548274 C = 7089.013716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.037 4.037 3 H 0.064 0.936 4 C -0.119 4.119 5 C 0.518 3.482 6 O -0.572 6.572 7 N -0.565 5.565 8 C 0.256 3.744 9 C -0.544 4.544 10 H 0.053 0.947 11 C 0.027 3.973 12 N -0.917 5.917 13 Si 0.951 3.049 14 H -0.276 1.276 15 H -0.282 1.282 16 H -0.268 1.268 17 C 0.134 3.866 18 C -0.096 4.096 19 C -0.139 4.139 20 C 0.078 3.922 21 F -0.141 7.141 22 C -0.134 4.134 23 C -0.106 4.106 24 C -0.155 4.155 25 C -0.166 4.166 26 C -0.186 4.186 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.021 0.979 33 H 0.039 0.961 34 H 0.268 0.732 35 H 0.122 0.878 36 H 0.158 0.842 37 H 0.165 0.835 38 H 0.140 0.860 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.699 7.504 4.401 9.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.055 4.055 3 H 0.083 0.917 4 C -0.158 4.158 5 C 0.310 3.690 6 O -0.452 6.452 7 N -0.293 5.293 8 C 0.137 3.863 9 C -0.583 4.583 10 H 0.071 0.929 11 C -0.174 4.174 12 N -0.556 5.556 13 Si 0.776 3.224 14 H -0.201 1.201 15 H -0.207 1.207 16 H -0.193 1.193 17 C 0.043 3.957 18 C -0.116 4.116 19 C -0.158 4.158 20 C 0.059 3.941 21 F -0.120 7.120 22 C -0.153 4.153 23 C -0.126 4.126 24 C -0.173 4.173 25 C -0.203 4.203 26 C -0.223 4.223 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.039 0.961 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.140 0.860 36 H 0.175 0.825 37 H 0.182 0.818 38 H 0.157 0.843 39 H 0.127 0.873 40 H 0.112 0.888 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.862 7.901 4.428 9.499 hybrid contribution -0.314 -1.113 -0.521 1.268 sum -3.176 6.788 3.907 8.452 Atomic orbital electron populations 1.21829 0.94599 1.01464 1.02116 1.20391 0.96306 0.97888 0.90956 0.91718 1.21657 1.03001 1.00084 0.91071 1.21151 0.78157 0.84692 0.85004 1.90578 1.42077 1.25567 1.86985 1.45976 1.50851 1.28877 1.03587 1.19207 0.89210 0.80327 0.97603 1.21552 0.93393 0.91714 1.51603 0.92859 1.25561 0.96007 1.01483 0.94359 1.69984 1.10303 1.25420 1.49872 0.85716 0.78839 0.78927 0.78909 1.20147 1.20687 1.19298 1.18006 0.93140 0.95110 0.89407 1.21134 0.95084 0.98671 0.96687 1.21142 1.01137 0.98758 0.94742 1.17706 0.93228 0.97591 0.85582 1.91471 1.90223 1.79601 1.50657 1.21178 0.94349 1.01634 0.98171 1.21235 1.00446 0.96084 0.94812 1.22311 0.95358 1.02378 0.97253 1.23070 1.03312 0.97386 0.96499 1.22993 0.93647 1.02316 1.03308 0.93092 0.93011 0.91559 0.88824 0.88935 0.96113 0.94290 0.92273 0.85989 0.82451 0.81790 0.84264 0.87321 0.88824 0.87335 0.88047 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 8.92 71.98 0.64 -3.55 16 2 C -0.04 -1.08 2.19 -10.79 -0.02 -1.11 16 3 H 0.06 2.02 7.71 -2.39 -0.02 2.00 16 4 C -0.12 -4.15 3.75 29.85 0.11 -4.04 16 5 C 0.52 20.79 7.25 87.66 0.64 21.43 16 6 O -0.57 -24.39 13.73 -3.05 -0.04 -24.43 16 7 N -0.57 -23.56 2.51 -635.25 -1.59 -25.15 16 8 C 0.26 11.87 4.88 85.63 0.42 12.29 16 9 C -0.54 -27.43 9.16 25.60 0.23 -27.20 16 10 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 11 C 0.03 1.37 5.46 84.66 0.46 1.83 16 12 N -0.92 -49.09 13.29 21.45 0.28 -48.80 16 13 Si 0.95 40.86 29.54 68.60 2.03 42.88 16 14 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 15 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 16 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 17 C 0.13 5.25 4.75 38.12 0.18 5.43 16 18 C -0.10 -3.49 9.56 22.39 0.21 -3.28 16 19 C -0.14 -4.24 10.02 22.30 0.22 -4.01 16 20 C 0.08 2.32 7.30 22.38 0.16 2.49 16 21 F -0.14 -3.95 17.26 44.97 0.78 -3.18 16 22 C -0.13 -3.87 10.02 22.30 0.22 -3.64 16 23 C -0.11 -3.59 9.69 22.39 0.22 -3.37 16 24 C -0.15 -3.83 5.15 -10.80 -0.06 -3.88 16 25 C -0.17 -3.41 10.18 30.61 0.31 -3.10 16 26 C -0.19 -4.33 9.67 30.61 0.30 -4.03 16 27 H 0.05 1.75 5.95 -2.39 -0.01 1.73 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.09 3.53 7.91 -2.38 -0.02 3.51 16 31 H 0.09 3.18 6.24 -2.39 -0.01 3.16 16 32 H 0.02 1.03 7.86 -2.39 -0.02 1.01 16 33 H 0.04 1.84 6.47 -2.39 -0.02 1.82 16 34 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 35 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 36 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 37 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 38 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 39 H 0.11 2.57 8.11 -2.39 -0.02 2.55 16 40 H 0.09 1.90 8.05 -2.39 -0.02 1.88 16 41 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 43 H 0.09 2.15 7.58 -2.39 -0.02 2.14 16 Total: -1.00 -57.09 362.40 6.71 -50.38 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 1.00 Total: 26.04 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 4.25 Total: -17.75 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -1.31 Total: -73.96 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.04 Total: -24.43 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.78 Total: -3.18 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.88 kcal Total: -57.09 6.71 -50.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732094684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.989 kcal (2) G-P(sol) polarization free energy of solvation -57.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds