Wall clock time and date at job start Tue Mar 31 2020 09:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46975 * 2 1 4 4 C 1.52994 * 109.47011 * 120.00230 * 2 1 3 5 5 C 1.50698 * 109.47477 * 294.99697 * 4 2 1 6 6 O 1.21287 * 120.00017 * 0.02562 * 5 4 2 7 7 N 1.34781 * 120.00206 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99952 * 355.27158 * 7 5 4 9 9 C 1.50698 * 109.47109 * 89.99464 * 8 7 5 10 10 H 1.08002 * 119.99938 * 0.02562 * 9 8 7 11 11 C 1.37883 * 120.00034 * 179.97438 * 9 8 7 12 12 N 1.31506 * 119.99628 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99823 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47332 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47158 * 120.00291 * 13 11 9 16 16 H 1.48498 * 109.47023 * 240.00021 * 13 11 9 17 17 C 1.40028 * 119.99845 * 175.26912 * 7 5 4 18 18 C 1.38849 * 120.04319 * 291.84967 * 17 7 5 19 19 C 1.38115 * 119.94951 * 179.76926 * 18 17 7 20 20 C 1.38467 * 120.04882 * 0.51328 * 19 18 17 21 21 F 1.35103 * 119.96178 * 179.72554 * 20 19 18 22 22 C 1.38474 * 120.08828 * 359.74106 * 20 19 18 23 23 C 1.38109 * 120.04671 * 0.02562 * 22 20 19 24 24 C 1.52996 * 109.46847 * 240.00667 * 2 1 3 25 25 C 1.52999 * 117.50117 * 128.62362 * 24 2 1 26 26 C 1.53001 * 117.50374 * 59.99551 * 24 2 1 27 27 H 1.09005 * 109.46946 * 299.99654 * 1 2 3 28 28 H 1.09000 * 109.47395 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47421 * 59.99816 * 1 2 3 30 30 H 1.09005 * 109.47392 * 55.00467 * 4 2 1 31 31 H 1.09008 * 109.46873 * 174.99926 * 4 2 1 32 32 H 1.08995 * 109.46762 * 209.99920 * 8 7 5 33 33 H 1.09001 * 109.47082 * 330.00370 * 8 7 5 34 34 H 0.97002 * 119.99837 * 179.97438 * 12 11 9 35 35 H 1.08005 * 120.02622 * 0.03010 * 18 17 7 36 36 H 1.08007 * 119.97766 * 180.23309 * 19 18 17 37 37 H 1.08008 * 119.97888 * 179.97438 * 22 20 19 38 38 H 1.07996 * 120.02794 * 179.97438 * 23 22 20 39 39 H 1.09004 * 115.54631 * 274.32628 * 24 2 1 40 40 H 1.08993 * 117.49998 * 359.97438 * 25 24 2 41 41 H 1.09001 * 117.49932 * 145.02009 * 25 24 2 42 42 H 1.09000 * 117.49873 * 214.97996 * 26 24 2 43 43 H 1.08997 * 117.49844 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 8 1.0110 1.0869 2.3634 7 7 1.9845 -0.3921 3.7002 8 6 2.6536 -1.6874 3.8440 9 6 4.1463 -1.4923 3.7736 10 1 4.5556 -0.5024 3.6359 11 6 4.9895 -2.5775 3.8860 12 7 4.4910 -3.7828 4.0541 13 14 6.8397 -2.3355 3.7993 14 1 7.1420 -0.8942 3.6078 15 1 7.4603 -2.8072 5.0633 16 1 7.3876 -3.1126 2.6587 17 6 1.7015 0.3795 4.8339 18 6 2.3691 1.5788 5.0429 19 6 2.0850 2.3407 6.1593 20 6 1.1428 1.9041 7.0753 21 9 0.8703 2.6480 8.1696 22 6 0.4797 0.7057 6.8713 23 6 0.7573 -0.0568 5.7538 24 6 2.0399 -0.7211 -1.2493 25 6 3.0741 0.0053 -2.1117 26 6 1.6356 -0.1493 -2.6097 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 1.6054 -1.7199 1.2950 31 1 3.1263 -0.7995 1.2055 32 1 2.3897 -2.1279 4.8054 33 1 2.3358 -2.3518 3.0404 34 1 5.0842 -4.5462 4.1328 35 1 3.1071 1.9178 4.3308 36 1 2.6014 3.2755 6.3204 37 1 -0.2547 0.3666 7.5871 38 1 0.2402 -0.9916 5.5952 39 1 2.1266 -1.8044 -1.1643 40 1 3.3908 0.9971 -1.7893 41 1 3.8414 -0.6000 -2.5943 42 1 1.4567 -0.8564 -3.4197 43 1 1.0066 0.7408 -2.6146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732094689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:31 Heat of formation + Delta-G solvation = -42.381401 kcal Electronic energy + Delta-G solvation = -25036.420509 eV Core-core repulsion = 21382.428829 eV Total energy + Delta-G solvation = -3653.991680 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.63474 -40.04156 -38.39574 -37.35007 -35.04556 -32.94021 -32.59018 -30.86874 -29.53197 -27.49641 -26.79199 -23.75735 -23.30309 -22.53230 -22.15371 -21.88470 -19.65531 -18.73956 -17.42280 -16.84605 -16.69124 -16.02252 -15.88525 -15.41200 -15.31170 -14.70754 -14.50232 -14.25230 -14.04761 -13.40531 -13.26872 -13.20045 -12.89926 -12.66728 -12.48067 -12.23877 -11.89337 -11.82224 -11.58917 -11.44059 -11.11890 -10.97908 -10.90137 -10.80572 -10.73001 -10.50738 -10.26560 -10.09240 -9.88069 -9.71178 -9.15162 -8.81367 -8.64330 -8.54882 -7.71062 -6.26591 -4.33967 1.43272 1.54584 3.17213 3.21592 3.26703 3.30911 3.67525 3.91338 3.95446 4.27481 4.53493 4.79097 5.03621 5.04237 5.06360 5.08183 5.09962 5.23299 5.48982 5.55518 5.63542 5.67919 5.70843 5.75583 5.83757 5.89053 6.01166 6.08643 6.14908 6.16367 6.22469 6.34329 6.38030 6.45463 6.46220 6.64562 6.69603 6.74711 6.77541 7.03537 7.10174 7.53323 7.68496 7.93755 8.11054 8.68881 8.88374 9.34028 10.80440 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.008939 B = 0.005605 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.438935 B = 4993.900978 C = 7314.731106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.044 4.044 3 H 0.074 0.926 4 C -0.126 4.126 5 C 0.523 3.477 6 O -0.557 6.557 7 N -0.564 5.564 8 C 0.239 3.761 9 C -0.538 4.538 10 H 0.062 0.938 11 C 0.067 3.933 12 N -0.889 5.889 13 Si 0.896 3.104 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.281 1.281 17 C 0.170 3.830 18 C -0.080 4.080 19 C -0.144 4.144 20 C 0.078 3.922 21 F -0.147 7.147 22 C -0.144 4.144 23 C -0.097 4.097 24 C -0.143 4.143 25 C -0.181 4.181 26 C -0.182 4.182 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.266 0.734 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.702 5.522 -4.148 8.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.063 4.063 3 H 0.092 0.908 4 C -0.165 4.165 5 C 0.314 3.686 6 O -0.437 6.437 7 N -0.292 5.292 8 C 0.120 3.880 9 C -0.577 4.577 10 H 0.081 0.919 11 C -0.136 4.136 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.207 1.207 17 C 0.078 3.922 18 C -0.099 4.099 19 C -0.163 4.163 20 C 0.059 3.941 21 F -0.126 7.126 22 C -0.164 4.164 23 C -0.117 4.117 24 C -0.161 4.161 25 C -0.218 4.218 26 C -0.219 4.219 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.123 0.877 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.976 5.843 -4.173 9.342 hybrid contribution 1.258 -0.112 0.268 1.292 sum -4.718 5.731 -3.904 8.387 Atomic orbital electron populations 1.21911 0.94894 1.01265 1.02426 1.20474 0.95958 0.98771 0.91086 0.90800 1.21654 1.04313 0.99574 0.90976 1.20711 0.78063 0.85278 0.84544 1.90598 1.40679 1.25657 1.86726 1.46060 1.57785 1.22104 1.03247 1.19597 0.92141 0.77355 0.98874 1.21451 0.90648 0.94185 1.51371 0.91950 1.24911 0.99209 0.94917 0.94566 1.69917 1.35514 0.98646 1.48677 0.86468 0.84863 0.78504 0.77858 1.19599 1.20806 1.20727 1.17621 0.93989 0.91708 0.88859 1.21111 0.98151 0.94228 0.96451 1.20923 0.99164 1.01375 0.94875 1.17617 0.99467 0.91616 0.85414 1.91452 1.93084 1.76105 1.51964 1.20884 1.01918 0.94210 0.99346 1.21082 0.96595 1.00181 0.93845 1.22367 1.03029 0.99376 0.91320 1.23000 0.92309 1.02124 1.04404 1.22901 0.98219 1.03243 0.97529 0.90695 0.93448 0.93444 0.89002 0.87477 0.94353 0.93724 0.92463 0.85217 0.84982 0.84903 0.84979 0.87693 0.88918 0.89087 0.89245 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.77 37.16 0.33 -1.79 16 2 C -0.04 -0.65 2.19 -90.62 -0.20 -0.85 16 3 H 0.07 1.18 7.71 -51.93 -0.40 0.78 16 4 C -0.13 -2.14 3.82 -27.89 -0.11 -2.24 16 5 C 0.52 10.20 7.25 -10.98 -0.08 10.12 16 6 O -0.56 -11.61 13.73 5.55 0.08 -11.53 16 7 N -0.56 -11.42 2.51 -114.72 -0.29 -11.71 16 8 C 0.24 5.37 4.88 -5.19 -0.03 5.35 16 9 C -0.54 -13.34 9.16 -34.44 -0.32 -13.66 16 10 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 11 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -23.63 13.29 55.43 0.74 -22.90 16 13 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 14 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 C 0.17 3.27 4.75 -83.66 -0.40 2.87 16 18 C -0.08 -1.44 9.56 -39.40 -0.38 -1.82 16 19 C -0.14 -2.29 10.02 -39.54 -0.40 -2.68 16 20 C 0.08 1.23 7.30 -39.41 -0.29 0.95 16 21 F -0.15 -2.25 17.27 2.25 0.04 -2.21 16 22 C -0.14 -2.20 10.02 -39.54 -0.40 -2.59 16 23 C -0.10 -1.66 9.68 -39.40 -0.38 -2.04 16 24 C -0.14 -1.85 5.15 -90.62 -0.47 -2.32 16 25 C -0.18 -2.16 10.18 -26.73 -0.27 -2.44 16 26 C -0.18 -2.04 9.73 -26.73 -0.26 -2.30 16 27 H 0.07 1.24 5.95 -51.93 -0.31 0.93 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.61 7.29 -51.93 -0.38 0.23 16 30 H 0.09 1.51 7.26 -51.93 -0.38 1.14 16 31 H 0.11 1.94 7.92 -51.92 -0.41 1.53 16 32 H 0.04 0.92 7.86 -51.93 -0.41 0.51 16 33 H 0.04 1.02 6.47 -51.93 -0.34 0.68 16 34 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 35 H 0.13 2.34 8.06 -52.48 -0.42 1.91 16 36 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 37 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 38 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 39 H 0.10 1.35 8.11 -51.93 -0.42 0.93 16 40 H 0.09 1.11 8.05 -51.93 -0.42 0.69 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.09 1.00 7.61 -51.93 -0.40 0.61 16 LS Contribution 362.57 15.07 5.46 5.46 Total: -1.00 -27.06 362.57 -9.08 -36.14 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -6.36 Total: 5.60 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -3.73 Total: -13.83 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.45 Total: -34.60 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.08 Total: -11.53 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.06 -9.08 -36.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732094689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.238 kcal (2) G-P(sol) polarization free energy of solvation -27.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds