Wall clock time and date at job start Tue Mar 31 2020 09:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46975 * 2 1 4 4 C 1.52994 * 109.47011 * 120.00230 * 2 1 3 5 5 C 1.50698 * 109.47477 * 294.99697 * 4 2 1 6 6 O 1.21287 * 120.00017 * 0.02562 * 5 4 2 7 7 N 1.34781 * 120.00206 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99952 * 355.27158 * 7 5 4 9 9 C 1.50698 * 109.47109 * 89.99464 * 8 7 5 10 10 H 1.08002 * 119.99938 * 0.02562 * 9 8 7 11 11 C 1.37883 * 120.00034 * 179.97438 * 9 8 7 12 12 N 1.31506 * 119.99628 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99823 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47332 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47158 * 120.00291 * 13 11 9 16 16 H 1.48498 * 109.47023 * 240.00021 * 13 11 9 17 17 C 1.40028 * 119.99845 * 175.26912 * 7 5 4 18 18 C 1.38849 * 120.04319 * 291.84967 * 17 7 5 19 19 C 1.38115 * 119.94951 * 179.76926 * 18 17 7 20 20 C 1.38467 * 120.04882 * 0.51328 * 19 18 17 21 21 F 1.35103 * 119.96178 * 179.72554 * 20 19 18 22 22 C 1.38474 * 120.08828 * 359.74106 * 20 19 18 23 23 C 1.38109 * 120.04671 * 0.02562 * 22 20 19 24 24 C 1.52996 * 109.46847 * 240.00667 * 2 1 3 25 25 C 1.52999 * 117.50117 * 128.62362 * 24 2 1 26 26 C 1.53001 * 117.50374 * 59.99551 * 24 2 1 27 27 H 1.09005 * 109.46946 * 299.99654 * 1 2 3 28 28 H 1.09000 * 109.47395 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47421 * 59.99816 * 1 2 3 30 30 H 1.09005 * 109.47392 * 55.00467 * 4 2 1 31 31 H 1.09008 * 109.46873 * 174.99926 * 4 2 1 32 32 H 1.08995 * 109.46762 * 209.99920 * 8 7 5 33 33 H 1.09001 * 109.47082 * 330.00370 * 8 7 5 34 34 H 0.97002 * 119.99837 * 179.97438 * 12 11 9 35 35 H 1.08005 * 120.02622 * 0.03010 * 18 17 7 36 36 H 1.08007 * 119.97766 * 180.23309 * 19 18 17 37 37 H 1.08008 * 119.97888 * 179.97438 * 22 20 19 38 38 H 1.07996 * 120.02794 * 179.97438 * 23 22 20 39 39 H 1.09004 * 115.54631 * 274.32628 * 24 2 1 40 40 H 1.08993 * 117.49998 * 359.97438 * 25 24 2 41 41 H 1.09001 * 117.49932 * 145.02009 * 25 24 2 42 42 H 1.09000 * 117.49873 * 214.97996 * 26 24 2 43 43 H 1.08997 * 117.49844 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 8 1.0110 1.0869 2.3634 7 7 1.9845 -0.3921 3.7002 8 6 2.6536 -1.6874 3.8440 9 6 4.1463 -1.4923 3.7736 10 1 4.5556 -0.5024 3.6359 11 6 4.9895 -2.5775 3.8860 12 7 4.4910 -3.7828 4.0541 13 14 6.8397 -2.3355 3.7993 14 1 7.1420 -0.8942 3.6078 15 1 7.4603 -2.8072 5.0633 16 1 7.3876 -3.1126 2.6587 17 6 1.7015 0.3795 4.8339 18 6 2.3691 1.5788 5.0429 19 6 2.0850 2.3407 6.1593 20 6 1.1428 1.9041 7.0753 21 9 0.8703 2.6480 8.1696 22 6 0.4797 0.7057 6.8713 23 6 0.7573 -0.0568 5.7538 24 6 2.0399 -0.7211 -1.2493 25 6 3.0741 0.0053 -2.1117 26 6 1.6356 -0.1493 -2.6097 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 1.6054 -1.7199 1.2950 31 1 3.1263 -0.7995 1.2055 32 1 2.3897 -2.1279 4.8054 33 1 2.3358 -2.3518 3.0404 34 1 5.0842 -4.5462 4.1328 35 1 3.1071 1.9178 4.3308 36 1 2.6014 3.2755 6.3204 37 1 -0.2547 0.3666 7.5871 38 1 0.2402 -0.9916 5.5952 39 1 2.1266 -1.8044 -1.1643 40 1 3.3908 0.9971 -1.7893 41 1 3.8414 -0.6000 -2.5943 42 1 1.4567 -0.8564 -3.4197 43 1 1.0066 0.7408 -2.6146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732094689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:30 Heat of formation + Delta-G solvation = -52.583206 kcal Electronic energy + Delta-G solvation = -25036.862893 eV Core-core repulsion = 21382.428829 eV Total energy + Delta-G solvation = -3654.434064 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.88326 -41.53208 -39.67079 -38.52943 -36.68022 -34.59952 -34.03679 -32.17405 -30.96207 -29.16035 -28.25966 -25.12944 -24.88288 -23.94528 -23.20615 -23.05570 -20.81799 -20.17757 -18.78121 -18.65537 -18.15790 -17.60881 -17.30884 -16.56384 -16.52881 -16.32697 -15.94721 -15.61041 -15.34526 -14.70017 -14.55520 -14.52116 -14.29294 -14.15856 -13.87727 -13.73269 -13.47934 -13.19861 -13.09683 -12.81142 -12.65925 -12.37635 -12.22693 -12.18151 -12.11321 -11.94740 -11.73407 -11.63138 -11.14613 -10.75530 -10.70993 -10.55372 -10.11409 -10.06013 -9.22978 -8.21701 -6.35208 0.08000 0.23910 1.39509 1.43527 1.52658 1.68367 2.16274 2.41065 2.57130 2.98148 3.09745 3.24377 3.63996 3.77157 3.85316 3.89609 4.06740 4.11456 4.23381 4.26817 4.39819 4.41205 4.46413 4.58271 4.69689 4.79712 4.83468 4.88712 4.97026 4.97785 5.07497 5.08448 5.10111 5.12849 5.17282 5.27974 5.33008 5.43870 5.48036 5.53231 5.63636 5.71596 6.01859 6.04199 6.46795 6.76174 7.27169 7.38620 8.84251 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.008939 B = 0.005605 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.438935 B = 4993.900978 C = 7314.731106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.036 4.036 3 H 0.059 0.941 4 C -0.119 4.119 5 C 0.519 3.481 6 O -0.572 6.572 7 N -0.565 5.565 8 C 0.255 3.745 9 C -0.542 4.542 10 H 0.052 0.948 11 C 0.026 3.974 12 N -0.917 5.917 13 Si 0.951 3.049 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.275 1.275 17 C 0.135 3.865 18 C -0.097 4.097 19 C -0.139 4.139 20 C 0.078 3.922 21 F -0.141 7.141 22 C -0.134 4.134 23 C -0.106 4.106 24 C -0.158 4.158 25 C -0.185 4.185 26 C -0.165 4.165 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.022 0.978 33 H 0.040 0.960 34 H 0.268 0.732 35 H 0.121 0.879 36 H 0.158 0.842 37 H 0.165 0.835 38 H 0.140 0.860 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.812 5.927 -4.412 9.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.055 4.055 3 H 0.078 0.922 4 C -0.159 4.159 5 C 0.311 3.689 6 O -0.452 6.452 7 N -0.293 5.293 8 C 0.136 3.864 9 C -0.581 4.581 10 H 0.071 0.929 11 C -0.175 4.175 12 N -0.556 5.556 13 Si 0.777 3.223 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.200 1.200 17 C 0.044 3.956 18 C -0.117 4.117 19 C -0.158 4.158 20 C 0.059 3.941 21 F -0.120 7.120 22 C -0.153 4.153 23 C -0.125 4.125 24 C -0.176 4.176 25 C -0.222 4.222 26 C -0.201 4.201 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.139 0.861 36 H 0.175 0.825 37 H 0.182 0.818 38 H 0.158 0.842 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.093 6.263 -4.434 9.798 hybrid contribution 1.243 -0.175 0.423 1.325 sum -4.849 6.088 -4.011 8.756 Atomic orbital electron populations 1.21830 0.94369 1.01653 1.02003 1.20377 0.96313 0.97842 0.90991 0.92228 1.21642 1.03394 0.99748 0.91071 1.21119 0.77642 0.85249 0.84920 1.90579 1.41391 1.26351 1.86910 1.45972 1.57684 1.21512 1.04120 1.19226 0.91259 0.78365 0.97597 1.21611 0.91909 0.93688 1.50896 0.92932 1.25558 1.02822 0.94704 0.94366 1.69994 1.36796 0.99233 1.49598 0.85600 0.80497 0.78314 0.77874 1.19569 1.20711 1.20031 1.18000 0.95691 0.92556 0.89379 1.21132 0.98570 0.94550 0.97400 1.21137 0.98943 1.01862 0.93843 1.17704 0.99227 0.91763 0.85405 1.91474 1.92980 1.75943 1.51556 1.21182 1.01726 0.93471 0.98930 1.21232 0.96397 1.00829 0.94045 1.22275 1.04727 0.99281 0.91314 1.23073 0.93078 1.01902 1.04118 1.22982 0.97394 1.03328 0.96427 0.93173 0.92624 0.91700 0.88630 0.88833 0.96032 0.94181 0.92274 0.86098 0.82486 0.81763 0.84202 0.87603 0.89340 0.88098 0.87461 0.88615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 8.77 71.98 0.63 -3.35 16 2 C -0.04 -1.08 2.19 -10.80 -0.02 -1.10 16 3 H 0.06 1.93 7.71 -2.39 -0.02 1.91 16 4 C -0.12 -4.14 3.82 29.85 0.11 -4.03 16 5 C 0.52 20.80 7.25 87.66 0.64 21.44 16 6 O -0.57 -24.42 13.73 -3.05 -0.04 -24.46 16 7 N -0.57 -23.52 2.51 -635.25 -1.59 -25.12 16 8 C 0.25 11.79 4.88 85.63 0.42 12.21 16 9 C -0.54 -27.36 9.16 25.60 0.23 -27.13 16 10 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 11 C 0.03 1.34 5.46 84.66 0.46 1.80 16 12 N -0.92 -49.01 13.29 21.45 0.28 -48.72 16 13 Si 0.95 40.94 29.54 68.60 2.03 42.97 16 14 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 15 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 17 C 0.13 5.26 4.75 38.12 0.18 5.44 16 18 C -0.10 -3.53 9.56 22.39 0.21 -3.31 16 19 C -0.14 -4.25 10.02 22.29 0.22 -4.02 16 20 C 0.08 2.32 7.30 22.38 0.16 2.49 16 21 F -0.14 -3.95 17.27 44.97 0.78 -3.17 16 22 C -0.13 -3.85 10.02 22.30 0.22 -3.62 16 23 C -0.11 -3.55 9.68 22.39 0.22 -3.33 16 24 C -0.16 -3.93 5.15 -10.79 -0.06 -3.99 16 25 C -0.18 -4.16 10.18 30.60 0.31 -3.85 16 26 C -0.16 -3.32 9.73 30.60 0.30 -3.03 16 27 H 0.05 1.67 5.95 -2.38 -0.01 1.65 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.57 7.29 -2.39 -0.02 1.55 16 30 H 0.10 3.22 7.26 -2.38 -0.02 3.20 16 31 H 0.09 3.51 7.92 -2.38 -0.02 3.49 16 32 H 0.02 1.07 7.86 -2.39 -0.02 1.05 16 33 H 0.04 1.88 6.47 -2.39 -0.02 1.86 16 34 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 35 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 36 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 37 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 38 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 39 H 0.11 2.62 8.11 -2.38 -0.02 2.61 16 40 H 0.09 2.06 8.05 -2.39 -0.02 2.04 16 41 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.10 1.87 7.61 -2.39 -0.02 1.86 16 Total: -1.00 -57.27 362.57 6.70 -50.57 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 1.00 Total: 25.34 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 4.25 Total: -17.40 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -1.31 Total: -73.84 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.04 Total: -24.46 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.78 Total: -3.17 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -57.27 6.70 -50.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732094689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.017 kcal (2) G-P(sol) polarization free energy of solvation -57.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds