Wall clock time and date at job start Tue Mar 31 2020 08:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47337 * 2 1 4 4 C 1.33011 * 119.99517 * 95.00071 * 3 2 1 5 5 C 1.47068 * 119.99361 * 172.69682 * 4 3 2 6 6 O 1.21624 * 120.00516 * 354.49614 * 5 4 3 7 7 N 1.34787 * 119.99713 * 174.50159 * 5 4 3 8 8 C 1.46495 * 119.99969 * 5.04850 * 7 5 4 9 9 C 1.50706 * 109.46993 * 269.99931 * 8 7 5 10 10 H 1.07998 * 120.00067 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99889 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00112 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99541 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47477 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.46991 * 120.00134 * 13 11 9 16 16 H 1.48501 * 109.46478 * 239.99733 * 13 11 9 17 17 C 1.39935 * 119.99829 * 185.04484 * 7 5 4 18 18 C 1.38873 * 120.05001 * 246.37995 * 17 7 5 19 19 C 1.38111 * 119.95135 * 179.78934 * 18 17 7 20 20 C 1.38475 * 120.04911 * 0.49431 * 19 18 17 21 21 F 1.35097 * 119.95585 * 179.71647 * 20 19 18 22 22 C 1.38479 * 120.09394 * 359.73750 * 20 19 18 23 23 C 1.38114 * 120.04717 * 0.02646 * 22 20 19 24 24 C 1.50701 * 120.00022 * 275.00146 * 3 2 1 25 25 C 1.52995 * 109.47078 * 271.41041 * 24 3 2 26 26 H 1.08997 * 109.46769 * 299.99909 * 1 2 3 27 27 H 1.08995 * 109.47096 * 59.99464 * 1 2 3 28 28 H 1.08989 * 109.47235 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46700 * 239.99896 * 2 1 3 30 30 H 1.08995 * 109.47096 * 120.00536 * 2 1 3 31 31 H 1.07995 * 120.00809 * 352.69560 * 4 3 2 32 32 H 1.09000 * 109.47236 * 29.99825 * 8 7 5 33 33 H 1.09000 * 109.47602 * 150.00523 * 8 7 5 34 34 H 0.97004 * 119.99745 * 180.02562 * 12 11 9 35 35 H 1.07994 * 120.02508 * 0.02755 * 18 17 7 36 36 H 1.08004 * 119.97638 * 180.22859 * 19 18 17 37 37 H 1.08004 * 119.97758 * 180.02562 * 22 20 19 38 38 H 1.08001 * 120.02081 * 179.97438 * 23 22 20 39 39 H 1.09007 * 109.46896 * 31.41308 * 24 3 2 40 40 H 1.09002 * 109.46541 * 151.40808 * 24 3 2 41 41 H 1.09000 * 109.46925 * 179.97438 * 25 24 3 42 42 H 1.09000 * 109.47144 * 300.00020 * 25 24 3 43 43 H 1.08994 * 109.46999 * 60.00384 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.3488 2.0142 1.1476 5 6 2.9886 3.3384 1.1386 6 8 3.3195 3.8469 0.0844 7 7 3.2084 3.9885 2.2987 8 6 2.9123 3.3314 3.5740 9 6 1.4884 3.6245 3.9714 10 1 0.8662 4.2384 3.3371 11 6 0.9801 3.1088 5.1448 12 7 1.7376 2.3608 5.9169 13 14 -0.7851 3.4715 5.6369 14 1 -1.4204 4.3297 4.6048 15 1 -1.5382 2.1971 5.7537 16 1 -0.7996 4.1766 6.9437 17 6 3.7195 5.2911 2.2847 18 6 4.9876 5.5460 2.7902 19 6 5.4918 6.8317 2.7715 20 6 4.7298 7.8679 2.2585 21 9 5.2226 9.1257 2.2464 22 6 3.4631 7.6168 1.7583 23 6 2.9570 6.3318 1.7707 24 6 2.1764 2.1691 -1.3001 25 6 3.5677 1.9150 -1.8835 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.1359 1.5238 2.0859 32 1 3.0456 2.2549 3.4677 33 1 3.5884 3.7072 4.3420 34 1 1.3798 1.9977 6.7422 35 1 5.5806 4.7389 3.1942 36 1 6.4794 7.0297 3.1611 37 1 2.8706 8.4263 1.3583 38 1 1.9689 6.1365 1.3809 39 1 1.4187 1.8240 -2.0038 40 1 2.0467 3.2365 -1.1212 41 1 3.6716 2.4559 -2.8241 42 1 4.3253 2.2601 -1.1799 43 1 3.6972 0.8477 -2.0624 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759196491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:10 Heat of formation + Delta-G solvation = -46.186863 kcal Electronic energy + Delta-G solvation = -25203.429334 eV Core-core repulsion = 21549.272637 eV Total energy + Delta-G solvation = -3654.156697 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.62299 -40.02945 -38.25857 -36.17468 -34.94478 -32.67241 -31.61521 -30.85471 -30.19937 -28.74875 -27.04952 -24.51083 -23.31417 -23.01586 -22.52471 -22.15111 -19.70329 -17.53098 -17.40385 -16.85248 -16.77042 -15.94338 -15.85647 -15.30350 -14.72784 -14.62706 -14.30525 -14.10095 -13.86011 -13.54650 -13.26319 -13.22833 -12.90121 -12.55255 -12.45850 -12.38091 -12.12817 -11.88467 -11.78731 -11.49011 -11.44250 -11.13345 -11.00553 -10.86382 -10.80629 -10.56816 -10.34155 -10.22640 -9.83067 -8.93840 -8.79194 -8.71716 -8.58129 -8.52263 -7.62721 -6.24282 -4.31282 1.42414 1.55978 1.89597 3.18216 3.27209 3.30922 3.69235 3.84093 4.00128 4.29724 4.54968 4.99040 5.05677 5.07384 5.09997 5.11890 5.39575 5.48911 5.56159 5.58983 5.62562 5.70075 5.85412 5.88671 5.95640 5.96745 6.02493 6.12354 6.17838 6.24469 6.36735 6.39507 6.46798 6.54352 6.62448 6.75377 6.77806 6.93749 7.01771 7.07951 7.13809 7.58742 7.71402 7.96440 8.14650 8.72231 8.92109 9.36281 10.82611 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.008736 B = 0.006294 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.392328 B = 4447.716332 C = 6896.354550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.053 4.053 4 C -0.195 4.195 5 C 0.551 3.449 6 O -0.551 6.551 7 N -0.559 5.559 8 C 0.239 3.761 9 C -0.535 4.535 10 H 0.062 0.938 11 C 0.066 3.934 12 N -0.891 5.891 13 Si 0.896 3.104 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.172 3.828 18 C -0.098 4.098 19 C -0.144 4.144 20 C 0.077 3.923 21 F -0.147 7.147 22 C -0.143 4.143 23 C -0.080 4.080 24 C -0.099 4.099 25 C -0.128 4.128 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.052 0.948 40 H 0.101 0.899 41 H 0.048 0.952 42 H 0.063 0.937 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.504 0.118 -9.085 9.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 C -0.054 4.054 4 C -0.216 4.216 5 C 0.344 3.656 6 O -0.432 6.432 7 N -0.286 5.286 8 C 0.121 3.879 9 C -0.573 4.573 10 H 0.080 0.920 11 C -0.137 4.137 12 N -0.529 5.529 13 Si 0.723 3.277 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.208 1.208 17 C 0.080 3.920 18 C -0.118 4.118 19 C -0.163 4.163 20 C 0.058 3.942 21 F -0.126 7.126 22 C -0.163 4.163 23 C -0.100 4.100 24 C -0.135 4.135 25 C -0.186 4.186 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.158 0.842 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.070 0.930 40 H 0.119 0.881 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.683 0.280 -9.417 9.796 hybrid contribution -1.026 0.326 0.763 1.320 sum 1.657 0.606 -8.654 8.832 Atomic orbital electron populations 1.21726 0.94689 1.01523 1.02523 1.20658 0.96396 0.93026 1.02683 1.22373 0.93343 0.94801 0.94932 1.22635 1.03850 0.95716 0.99359 1.18605 0.78506 0.85897 0.82592 1.90654 1.52509 1.69798 1.30266 1.45892 1.61637 1.11933 1.09126 1.19610 0.96901 0.93395 0.78026 1.21466 0.96866 1.32530 1.06463 0.91979 1.24910 0.98095 0.94711 0.95956 1.69923 1.36260 1.33451 1.13270 0.86469 0.84340 0.78269 0.78628 1.19623 1.20753 1.20808 1.17595 0.91570 0.85482 0.97348 1.21080 0.94388 0.96417 0.99872 1.20879 1.00646 0.91981 1.02789 1.17614 0.93950 0.79201 1.03442 1.91449 1.87934 1.38367 1.94879 1.20918 0.94717 0.97848 1.02808 1.21099 0.99521 0.90894 0.98472 1.20914 0.97115 1.02459 0.93055 1.21506 0.97205 0.99531 1.00314 0.91898 0.92765 0.92634 0.91086 0.90781 0.84182 0.93704 0.94354 0.92496 0.84967 0.84920 0.85007 0.85250 0.92977 0.88065 0.93329 0.91829 0.94150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.90 37.16 0.37 -1.40 16 2 C -0.09 -1.15 6.10 -27.88 -0.17 -1.32 16 3 C -0.05 -0.82 4.61 -101.16 -0.47 -1.29 16 4 C -0.20 -3.57 8.78 -37.82 -0.33 -3.91 16 5 C 0.55 11.07 7.32 -12.68 -0.09 10.98 16 6 O -0.55 -11.33 11.32 5.26 0.06 -11.27 16 7 N -0.56 -11.59 2.51 -116.05 -0.29 -11.89 16 8 C 0.24 5.51 4.74 -5.19 -0.02 5.49 16 9 C -0.53 -13.53 9.38 -34.44 -0.32 -13.86 16 10 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 11 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -23.92 13.29 55.43 0.74 -23.19 16 13 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 17 C 0.17 3.34 4.80 -83.69 -0.40 2.94 16 18 C -0.10 -1.68 9.62 -39.39 -0.38 -2.06 16 19 C -0.14 -2.21 10.02 -39.54 -0.40 -2.60 16 20 C 0.08 1.22 7.30 -39.41 -0.29 0.94 16 21 F -0.15 -2.26 17.26 2.25 0.04 -2.23 16 22 C -0.14 -2.29 10.02 -39.54 -0.40 -2.68 16 23 C -0.08 -1.46 9.49 -39.39 -0.37 -1.83 16 24 C -0.10 -1.49 5.33 -27.88 -0.15 -1.64 16 25 C -0.13 -1.83 9.44 37.16 0.35 -1.48 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.57 8.14 -51.94 -0.42 0.15 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.94 8.03 -51.93 -0.42 0.53 16 31 H 0.14 2.72 6.29 -52.49 -0.33 2.39 16 32 H 0.05 1.05 6.25 -51.93 -0.32 0.73 16 33 H 0.04 0.93 7.82 -51.93 -0.41 0.53 16 34 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 35 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 36 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 37 H 0.13 1.77 8.06 -52.48 -0.42 1.34 16 38 H 0.13 2.35 8.06 -52.49 -0.42 1.93 16 39 H 0.05 0.69 8.13 -51.92 -0.42 0.26 16 40 H 0.10 1.79 5.60 -51.93 -0.29 1.49 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.06 1.04 6.86 -51.93 -0.36 0.69 16 43 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 363.73 15.07 5.48 5.48 Total: -1.00 -27.20 363.73 -8.49 -35.69 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.32 Total: 4.28 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -3.17 Total: -12.11 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.45 Total: -35.07 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.06 Total: -11.27 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.20 -8.49 -35.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759196491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.500 kcal (2) G-P(sol) polarization free energy of solvation -27.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds